View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6571_low_1 (Length: 885)

Name: NF6571_low_1
Description: NF6571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6571_low_1
NF6571_low_1
[»] chr5 (3 HSPs)
chr5 (527-885)||(33272836-33273194)
chr5 (261-455)||(33272578-33272772)
chr5 (33-141)||(33272466-33272574)


Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 527 - 885
Target Start/End: Original strand, 33272836 - 33273194
Alignment:
Q  527 tatatgcctaaccaaataaaactagcttagaaaaaagatcaaggattttaaataccgggcatattaatggttgcgatccccttataatctttgatatgtg 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33272836 tatatgcctaaccaaataaaactagcttagaaaaaagatcaaggattttaaataccgggcatattaatggttgcgatccccttataatctttgatatgtg 33272935  T
Q  627 aaaatcaaagtgaaatacggttgatgcaaattcaatcacattgttttacaattttggcaacataaaaattgttatattgtgatctagattgcgtttgtga 726  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33272936 aaaatcaaagtgaaatacggtggatgcaacttcaatcacattgttttacaattttggcaacataaaaattgttatattgtgatctagattgcgattgtga 33273035  T
Q  727 acctttatttataacccttagcagaaggtacactcttctctaattgtcgactaacatccctctaaacactagtttgatcaaccacatctcccaatcttcc 826  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||| | |||||||| ||||||||||| |||||||||||||||||||||||||    
T  33273036 acctttatttataacccttagcagaaggtacactcttagctaattgtcgacgaccatccctcgaaacactagttggatcaaccacatctcccaatcttcc 33273135  T
Q  827 acatacaacaccattcttgtggtaaaaccctttccttatcttcttcttctttgtccttt 885  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  33273136 acatacaacaccatgcttgtggaaaaaccctttccttatcttcttcttctttgtccttt 33273194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 261 - 455
Target Start/End: Original strand, 33272578 - 33272772
Alignment:
Q  261 attcgagagctctattgaataatgtcatgcatcgttctttaattttagggattgtcatgcatagcatattaaattcctttctatatctaagctacttggt 360  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33272578 attcgagagctctattgaataatgtcatgcatcgatctttaattttagggattgtcatgcatagcatattaaattcctttctatatctaagctacttggt 33272677  T
Q  361 ctacaatataatcatatatatttaactcaaactttgaatgtatttatcaacaaatattctacaataactaacaataaagtataagcaatcccctt 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33272678 ctacaatataatcatatatatttaactcaaactttgaatgtatttatcaacaaatattctacaataactaacaataaagtataagcaatcccctt 33272772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 33272466 - 33272574
Alignment:
Q  33 aattggcaaataaaaatcaatattaataatggtgatatcaatgatcattttacaaccgtctcacatgagaattgaactcatctattgaggttacaaagtt 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33272466 aattggcaaataaaaatcaatattaataatggtgatatcaatgatcattttacaaccgtctcacatgaaaattgaactcatctattgaggttacaaagtt 33272565  T
Q  133 aaattttta 141  Q
    |||||||||    
T  33272566 aaattttta 33272574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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