View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6571_low_10 (Length: 360)

Name: NF6571_low_10
Description: NF6571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6571_low_10
NF6571_low_10
[»] chr1 (16 HSPs)
chr1 (10-350)||(2490768-2491108)
chr1 (121-323)||(6478102-6478309)
chr1 (161-292)||(47623460-47623591)
chr1 (214-319)||(37297947-37298052)
chr1 (261-343)||(52255081-52255159)
chr1 (135-258)||(4646427-4646550)
chr1 (201-256)||(28351376-28351431)
chr1 (207-301)||(37192368-37192462)
chr1 (199-319)||(51994161-51994279)
chr1 (211-301)||(16918254-16918344)
chr1 (207-322)||(43387951-43388066)
chr1 (208-256)||(23635164-23635212)
chr1 (150-301)||(6259422-6259573)
chr1 (201-274)||(11909540-11909613)
chr1 (208-301)||(12813646-12813739)
chr1 (208-256)||(23713833-23713881)
[»] chr3 (22 HSPs)
chr3 (57-350)||(50651639-50651932)
chr3 (10-349)||(3140409-3140748)
chr3 (10-343)||(963407-963740)
chr3 (138-321)||(17098248-17098431)
chr3 (138-321)||(15312167-15312349)
chr3 (207-319)||(48570480-48570592)
chr3 (208-326)||(16178528-16178646)
chr3 (201-301)||(11310634-11310734)
chr3 (207-322)||(11203403-11203518)
chr3 (211-301)||(7031462-7031552)
chr3 (207-301)||(19890283-19890377)
chr3 (207-301)||(33496152-33496246)
chr3 (207-301)||(53184978-53185072)
chr3 (207-301)||(29524186-29524280)
chr3 (150-292)||(7031932-7032074)
chr3 (207-301)||(12342668-12342762)
chr3 (207-301)||(30695784-30695878)
chr3 (207-276)||(36801516-36801585)
chr3 (208-256)||(20532477-20532525)
chr3 (150-301)||(40930912-40931063)
chr3 (201-274)||(7312409-7312482)
chr3 (201-274)||(19920664-19920737)
[»] chr4 (20 HSPs)
chr4 (10-343)||(46145238-46145571)
chr4 (10-343)||(19740284-19740617)
chr4 (190-350)||(36223513-36223673)
chr4 (200-326)||(48241959-48242085)
chr4 (202-319)||(54483595-54483712)
chr4 (202-319)||(48311677-48311794)
chr4 (201-301)||(55726028-55726128)
chr4 (199-326)||(5790521-5790648)
chr4 (153-292)||(23163019-23163157)
chr4 (207-319)||(20002305-20002417)
chr4 (207-262)||(5148305-5148360)
chr4 (198-276)||(11587630-11587708)
chr4 (137-301)||(17402057-17402221)
chr4 (207-322)||(12697397-12697512)
chr4 (199-301)||(2822470-2822572)
chr4 (207-301)||(8360705-8360799)
chr4 (211-292)||(7403526-7403607)
chr4 (207-322)||(4548660-4548775)
chr4 (211-301)||(15739826-15739916)
chr4 (150-323)||(20788663-20788837)
[»] chr6 (19 HSPs)
chr6 (10-343)||(13937263-13937596)
chr6 (153-323)||(15959201-15959371)
chr6 (150-271)||(18682889-18683011)
chr6 (207-319)||(11462002-11462114)
chr6 (153-292)||(14373378-14373517)
chr6 (155-292)||(32536509-32536646)
chr6 (189-271)||(12429055-12429137)
chr6 (207-273)||(20883471-20883537)
chr6 (150-323)||(18651618-18651791)
chr6 (150-292)||(24767808-24767950)
chr6 (207-301)||(17606775-17606869)
chr6 (207-276)||(10929745-10929814)
chr6 (208-316)||(17330554-17330669)
chr6 (207-276)||(215033-215102)
chr6 (150-274)||(12733757-12733881)
chr6 (208-258)||(33185084-33185134)
chr6 (151-276)||(5734626-5734751)
chr6 (207-276)||(10577673-10577742)
chr6 (211-252)||(12674561-12674602)
[»] chr5 (25 HSPs)
chr5 (10-343)||(33169221-33169554)
chr5 (9-343)||(24407516-24407849)
chr5 (9-323)||(32228387-32228701)
chr5 (190-349)||(8941832-8941991)
chr5 (208-321)||(26072478-26072591)
chr5 (189-273)||(27166375-27166459)
chr5 (202-319)||(27795070-27795187)
chr5 (126-301)||(18090122-18090297)
chr5 (207-301)||(10774056-10774150)
chr5 (207-276)||(18359531-18359600)
chr5 (199-312)||(17106695-17106808)
chr5 (201-256)||(18148173-18148228)
chr5 (190-301)||(19255547-19255658)
chr5 (211-301)||(8300627-8300717)
chr5 (151-301)||(31641362-31641512)
chr5 (126-276)||(35984151-35984300)
chr5 (189-292)||(42927745-42927848)
chr5 (207-276)||(27766673-27766742)
chr5 (207-276)||(33385815-33385884)
chr5 (220-292)||(26019431-26019503)
chr5 (199-274)||(12824831-12824906)
chr5 (211-301)||(25857869-25857959)
chr5 (198-268)||(29142438-29142508)
chr5 (124-301)||(23237988-23238165)
chr5 (201-274)||(27117596-27117669)
[»] chr8 (15 HSPs)
chr8 (59-321)||(12257740-12258006)
chr8 (59-321)||(12265132-12265398)
chr8 (199-301)||(25089991-25090094)
chr8 (155-292)||(34137352-34137489)
chr8 (202-319)||(13879923-13880040)
chr8 (201-301)||(2529491-2529591)
chr8 (201-301)||(13199728-13199828)
chr8 (198-301)||(5181274-5181377)
chr8 (150-301)||(9922206-9922357)
chr8 (211-301)||(2169945-2170035)
chr8 (211-301)||(20823901-20823991)
chr8 (207-322)||(37433716-37433831)
chr8 (207-301)||(17699087-17699181)
chr8 (222-292)||(29733406-29733476)
chr8 (211-276)||(43270080-43270145)
[»] chr2 (16 HSPs)
chr2 (138-301)||(15917258-15917421)
chr2 (136-321)||(15391728-15391913)
chr2 (150-259)||(42563112-42563221)
chr2 (137-292)||(17765333-17765488)
chr2 (199-319)||(44022949-44023069)
chr2 (207-301)||(33516225-33516319)
chr2 (207-301)||(40176275-40176369)
chr2 (126-292)||(28252335-28252500)
chr2 (210-267)||(3400623-3400680)
chr2 (201-292)||(12645150-12645241)
chr2 (150-320)||(38604757-38604927)
chr2 (199-258)||(44473006-44473065)
chr2 (211-301)||(11000395-11000485)
chr2 (211-301)||(14439358-14439448)
chr2 (189-298)||(41206614-41206723)
chr2 (216-252)||(16241529-16241565)
[»] scaffold0161 (1 HSPs)
scaffold0161 (177-295)||(6420-6538)
[»] chr7 (10 HSPs)
chr7 (199-323)||(48394487-48394611)
chr7 (199-319)||(37254345-37254465)
chr7 (207-319)||(25619046-25619158)
chr7 (282-343)||(32703519-32703580)
chr7 (235-319)||(41698608-41698692)
chr7 (211-301)||(17720249-17720339)
chr7 (208-301)||(37919149-37919242)
chr7 (150-276)||(235823-235949)
chr7 (211-301)||(18530115-18530205)
chr7 (150-276)||(47876613-47876739)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 2491108 - 2490768
Alignment:
Q  10 tggtgcgagtttggcttggtgttggtggggtagaaactcagttcataacagaccattgtttgcagtttattaattatgtaggtggtttgagagcacaacg 109  Q
    ||||| ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||    
T  2491108 tggtgtgagcttggcttggtgttgatggggtcgaaactcagttcataacagaccattgtttgcagtttattaattatgcaggtggttcgagagcacgacg 2491009  T
Q  110 gtcnnnnnnncatctaatttggctgttgtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttg 209  Q
     ||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || || || ||||||||||||    
T  2491008 atcttttttccatctaatttggctgctgtgtgtttggatattgtggaatgagcggaatgatagcgttttcagtaataatcatagttctttaccacatttg 2490909  T
Q  210 ttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgta 309  Q
    ||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  2490908 ttagataaagtaaaatcttattccctgtggtggctgaaagttagtaatgtagtttttcgttttggtattcacaattggtggtcgaacccgctcatttgta 2490809  T
Q  310 tgggtatcgactaactgccttgtatcattgactactctgtg 350  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  2490808 tgggtatcgactaactgccttgtatctttgactactctgtg 2490768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 121 - 323
Target Start/End: Complemental strand, 6478309 - 6478102
Alignment:
Q  121 atctaatttggctgttgtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatt-----tgttagat 215  Q
    |||||||||||||  ||||||||||||| ||||||| |||||||||||||||||||||||| ||||  ||||||||  |||| |||      ||||||||    
T  6478309 atctaatttggctcatgtgtgtttggattttgtggactgagcggaatgatagagttttcagaaatagacaaagctctctaccgcatcgcatatgttagat 6478210  T
Q  216 aaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgtatgggta 315  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| || ||| ||||||||||| || ||| ||| |||||||||||    
T  6478209 aaagtaaaatcatattccttgtggtggctaaaagctaataatgttgtttttagttttgatactcataattggtggtcgaatccgttcaattgtatgggta 6478110  T
Q  316 tcgactaa 323  Q
    ||||||||    
T  6478109 tcgactaa 6478102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 161 - 292
Target Start/End: Original strand, 47623460 - 47623591
Alignment:
Q  161 gcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgta 260  Q
    |||||||||||||||||| || || |  || ||||| ||||||||  ||||||| ||||||||||||| ||| ||||||||| | ||||||||||||||     
T  47623460 gcggaatgatagagtttttagaaagaggcagagctctttaccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaatgtt 47623559  T
Q  261 gtttttagttttggtattcacaattggtggtc 292  Q
    |||||||| | || || ||| |||||||||||    
T  47623560 gtttttagctatgatactcataattggtggtc 47623591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 319
Target Start/End: Original strand, 37297947 - 37298052
Alignment:
Q  214 ataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgtatggg 313  Q
    |||||||||||||| || ||||||||||| ||||||||||||||||||| |||| ||||||||  || ||||||||||| | ||||||  | |||||| |    
T  37297947 ataaagtaaaatcacataccttgtggtggttgaaagctagtaatgtagtctttaattttggtacacataattggtggtcgagcccgcttttatgtatgag 37298046  T
Q  314 tatcga 319  Q
    ||||||    
T  37298047 tatcga 37298052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 52255159 - 52255081
Alignment:
Q  261 gtttttagttttggtattcacaattggtggtcaaacccgctcatttgtatgggtatcgactaactgccttgtatcattgacta 343  Q
    |||||||||||||||||| | ||||||||    ||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  52255159 gtttttagttttggtatttataattggtg----aactcgctcatttgtatgggtatcgactaactgtcttgtatcattgacta 52255081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 258
Target Start/End: Original strand, 4646427 - 4646550
Alignment:
Q  135 ttgtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattcct 234  Q
    |||||||||||| |||||||||| || || ||| | ||  | || || ||| | ||||||||  ||| |||| ||||||||||||||||||||||||| |    
T  4646427 ttgtgtgtttgggtattgtggaacgaacgaaataagaggttatttaggaatcaacaaagctctatactacatctgttagataaagtaaaatcatattctt 4646526  T
Q  235 tgtggtggctgaaagctagtaatg 258  Q
    |||||||| |||||||||||||||    
T  4646527 tgtggtggttgaaagctagtaatg 4646550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 28351431 - 28351376
Alignment:
Q  201 ccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaa 256  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  28351431 ccacatttgttagataaagtaaaatcatattcattgtggtggttgaaagctagtaa 28351376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 37192368 - 37192462
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| |||| | ||||||  ||||  |||||||| | ||||||    
T  37192368 ttgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatgtagtctttaatgttggtacacacatgtggtggtcgagcccgct 37192462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 319
Target Start/End: Original strand, 51994161 - 51994279
Alignment:
Q  199 taccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaaccc 298  Q
    ||||||| ||||||||||||||||||||| || || ||  || ||||||||||||||||||  | |||| |||||||| ||| ||||||||||| | |||    
T  51994161 taccacaattgttagataaagtaaaatcaaataccctg--gtagctgaaagctagtaatgtgatctttacttttggtactcataattggtggtcgagccc 51994258  T
Q  299 gctcatttgtatgggtatcga 319  Q
    |||  | |||||||| |||||    
T  51994259 gcttgtatgtatgggcatcga 51994279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 16918254 - 16918344
Alignment:
Q  211 tagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||  |||| |||| ||||||||  || | ||||||||| | ||||||    
T  16918254 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaacatagtatttatttttggtacacatagttggtggtcgagcccgct 16918344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 322
Target Start/End: Complemental strand, 43388066 - 43387951
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcattt 306  Q
    ||||||||||||||||||||| || ||||||||||| |||||| ||| ||  |||| |||| ||||||||  || | ||||||||| | ||||||  | |    
T  43388066 ttgttagataaagtaaaatcaaataccttgtggtggttgaaagttagcaacatagtctttatttttggtacacatagttggtggtcgagcccgcttctat 43387967  T
Q  307 gtatgggtatcgacta 322  Q
    ||||||| || |||||    
T  43387966 gtatgggcattgacta 43387951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 23635164 - 23635212
Alignment:
Q  208 tgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaa 256  Q
    |||||||||||||||||||||||||  |||||||| ||||||| |||||    
T  23635164 tgttagataaagtaaaatcatattctctgtggtggttgaaagcgagtaa 23635212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 301
Target Start/End: Complemental strand, 6259573 - 6259422
Alignment:
Q  150 ttgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaag 249  Q
    |||||||||||  ||||||||||  |||| || ||||  |||||  | || |||||  || |||||||||| ||||||  ||| ||||||||||| || |    
T  6259573 ttgtggaatgaaaggaatgataggatttttagaaatagacaaagtactttgccacaaatgctagataaagtgaaatcaacttctttgtggtggctaaagg 6259474  T
Q  250 ctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    |||| ||||| || ||||||||||||| |||  | |||||||| | ||||||    
T  6259473 ctagcaatgttgtatttagttttggtactcaacactggtggtcgagcccgct 6259422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 11909540 - 11909613
Alignment:
Q  201 ccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttgg 274  Q
    ||||| ||| |||||||||| ||||||  ||| ||||||||| | || ||||||||||| || |||||||||||    
T  11909540 ccacaattgctagataaagtgaaatcaacttcgttgtggtggttaaaggctagtaatgttgtatttagttttgg 11909613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 301
Target Start/End: Original strand, 12813646 - 12813739
Alignment:
Q  208 tgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||| ||||||  ||| ||||||||| | || ||||| ||||| || ||||||||| |||||||  | |||||||| | ||||||    
T  12813646 tgttagataaagtgaaatcaacttctttgtggtggttaaaggctagcaatgttgtatttagttttagtattcatcagtggtggtcgagcccgct 12813739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 23713833 - 23713881
Alignment:
Q  208 tgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaa 256  Q
    |||||||||||||||||||||||||  | |||||| ||||||| |||||    
T  23713833 tgttagataaagtaaaatcatattctctatggtggttgaaagcgagtaa 23713881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 57 - 350
Target Start/End: Original strand, 50651639 - 50651932
Alignment:
Q  57 acagaccattgtttgcagtttattaattatgtaggtggtttgagagcacaacggtcnnnnnnncatctaatttggctgttgtgtgtttggatattgtgga 156  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||       ||||||||||||||| |||||||||||||||||||||    
T  50651639 acagaccattgtttgcagtttattaattatgcaggtggtttgagagcacgacggtctttttttcatctaatttggctgctgtgtgtttggatattgtgga 50651738  T
Q  157 atgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaa 256  Q
    |||||||||||||||| |||||||||||||| || || || |||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||    
T  50651739 atgagcggaatgatagcgttttcagtaataatcatagttctttaccacatttgttaggtaaagtaaaatcttattccttgtggtggttgaaagctagtaa 50651838  T
Q  257 tgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgtatgggtatcgactaactgccttgtatcattgactactctgtg 350  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50651839 tgtagtttttagttttggtattcacaattggtggtcgaacccgctcatttgtatgggtatcgactaactgccttgtatctttgactactctgtg 50651932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 10 - 349
Target Start/End: Complemental strand, 3140748 - 3140409
Alignment:
Q  10 tggtgcgagtttggcttggtgttggtggggtagaaactcagttcataacagaccattgtttgcagtttattaattatgtaggtggtttgagagcacaacg 109  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||||| |||||||| |||||| ||||||||||||| ||||| |||||||||||||||    
T  3140748 tggtgcgagcttggcttggtgttgttggggtcgaaactcagttcataaaagaccattttttgcaatttattaattatgcaggtgatttgagagcacaacg 3140649  T
Q  110 gtcnnnnnnncatctaatttggctgttgtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttg 209  Q
     ||       || |||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | |||||  ||||||| ||||| ||||||    
T  3140648 ttcttttttccaactaatttggcttctgtgtgtttggatattgtggaatgagcggaatgatagagttttccgaaataaataaagctctttaccgcatttg 3140549  T
Q  210 ttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgta 309  Q
    ||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  3140548 ttagataaagtaaaatcatgtttcttgtcgtgactgaaagctagtaatgtagtttttagttttggtattcataattggtggtcgaacccgctcatatgta 3140449  T
Q  310 tgggtatcgactaactgccttgtatcattgactactctgt 349  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  3140448 tgggtatcgactaactgtcttgtatcattgactagtctgt 3140409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 343
Target Start/End: Original strand, 963407 - 963740
Alignment:
Q  10 tggtgcgagtttggcttggtgttggtggggtagaaactcagttcataacagaccattgtttgcagtttattaattatgtaggtggtttgagagcacaacg 109  Q
    ||||||||| |||||||||| ||| ||| || ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||  ||    
T  963407 tggtgcgagcttggcttggtcttgttggagtcgaaactcagttcataacagaccattttttgcaatttattaattatgtaggtggtatgagagcacggcg 963506  T
Q  110 gtcnnnnnnncatctaatttggctgttgtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttg 209  Q
     ||       ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||   |||||  | ||||| ||||| ||||||    
T  963507 ttcctttttccatctaatttggcttctgtgtgtttggatattgtggaatgagcggaatgatagagttttccaaaataaatatagctctttaccgcatttg 963606  T
Q  210 ttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgta 309  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  963607 ttagataaagtaaaatcatgttccttgtggtggatgaaagctagtaatgtagtttttagttttggtattcataattggtggtcgaacccgctcatttgta 963706  T
Q  310 tgggtatcgactaactgccttgtatcattgacta 343  Q
    ||||||||||||||||| ||||||||||||||||    
T  963707 tgggtatcgactaactgtcttgtatcattgacta 963740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 138 - 321
Target Start/End: Original strand, 17098248 - 17098431
Alignment:
Q  138 tgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgt 237  Q
    ||||||||| | ||||||||||| |||||||| ||  | ||||| ||||| ||||| ||  |||| ||| |||||||| |||||||||||||||||||||    
T  17098248 tgtgtttgggttttgtggaatgatcggaatgacaggttattcaggaataaacaaagatctctaccgcatatgttagatgaagtaaaatcatattccttgt 17098347  T
Q  238 ggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgtatgggtatcgact 321  Q
    ||||| ||||| ||||||| |  || ||||||||| ||| ||| |||||||||||||||| |||| | |||||| |||||||||    
T  17098348 ggtggttgaaatctagtaaagatgtctttagttttagtactcataattggtggtcaaaccagctcttatgtatgcgtatcgact 17098431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 138 - 321
Target Start/End: Complemental strand, 15312349 - 15312167
Alignment:
Q  138 tgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgt 237  Q
    ||||||||| | ||||||||||| |||||||  ||   ||| || ||||| ||||||||  ||||| || ||||||||||| ||||||||||||||||||    
T  15312349 tgtgtttgggttttgtggaatgatcggaatgcaagttattt-aggaataagcaaagctcactaccatatatgttagataaactaaaatcatattccttgt 15312251  T
Q  238 ggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgtatgggtatcgact 321  Q
    ||||| |||||||||||||||| || |||||||| |||| |||   ||||||||| ||||| ||| | ||||||||||||||||    
T  15312250 ggtggttgaaagctagtaatgttgtatttagtttcggtactcatctttggtggtcgaacccactcttatgtatgggtatcgact 15312167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 319
Target Start/End: Original strand, 48570480 - 48570592
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcattt 306  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||| |||||| || |||| |||||||| ||| ||||||||||| | ||||||  | |    
T  48570480 ttgttagataaagtaaaatcaaattccctgtggtggttgaaagctaataatgtggtctttatttttggtactcataattggtggtcgagcccgcttgtat 48570579  T
Q  307 gtatgggtatcga 319  Q
    ||||||| |||||    
T  48570580 gtatgggcatcga 48570592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 208 - 326
Target Start/End: Complemental strand, 16178646 - 16178528
Alignment:
Q  208 tgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttg 307  Q
    ||||| ||||||| ||||  ||||| ||||||||| |||||||||||||||| |||||||| || |||||||| | ||||||||| ||||||||| | ||    
T  16178646 tgttatataaagttaaattctattcattgtggtggttgaaagctagtaatgttgtttttagcttcggtattcatagttggtggtctaacccgctcttatg 16178547  T
Q  308 tatgggtatcgactaactg 326  Q
    ||| || ||||||| ||||    
T  16178546 tataggcatcgactgactg 16178528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 301
Target Start/End: Original strand, 11310634 - 11310734
Alignment:
Q  201 ccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgc 300  Q
    |||| |||||||||||||||||||||  || ||||||||||| |||||||||| ||||| || |||| ||||||||  || ||||||||||| |||||||    
T  11310634 ccacttttgttagataaagtaaaatctcataccttgtggtggttgaaagctagcaatgtggtctttaattttggtacacataattggtggtcgaacccgc 11310733  T
Q  301 t 301  Q
    |    
T  11310734 t 11310734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 207 - 322
Target Start/End: Complemental strand, 11203518 - 11203403
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcattt 306  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||||||  |||| |||| ||||||||  || | ||||||||| | ||||||  | |    
T  11203518 ttgttagataaagtaaaatcaaataccttgtggtggttgaaagctagtaacatagtctttatttttggtacacatagttggtggtcgagcccgcttctat 11203419  T
Q  307 gtatgggtatcgacta 322  Q
    ||||||| || |||||    
T  11203418 gtatgggcattgacta 11203403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 7031462 - 7031552
Alignment:
Q  211 tagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||  ||||||||| ||||||||  || | ||||||||| | ||||||    
T  7031462 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaacatagtttttatttttggtacacatagttggtggtcgagcccgct 7031552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 19890377 - 19890283
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||||||| |  ||||||||||| ||||||||||||||||||| |||| | ||||||  ||||  |||||||| | ||||||    
T  19890377 ttgttagataaagtaaaatcacacaccttgtggtggttgaaagctagtaatgtagtctttaatgttggtacacacatgtggtggtcgagcccgct 19890283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 33496246 - 33496152
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||||||| || ||||||||||| |||||| ||||||  |||| |||| ||||||||  || | ||||||||| ||||||||    
T  33496246 ttgttagataaagtaaaatcaaataccttgtggtggttgaaagttagtaacatagtctttatttttggtacacatagttggtggtcgaacccgct 33496152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 53184978 - 53185072
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||||||| || ||||||||||| |||||| ||||  |||||| |||| |||||||| ||| ||||| ||||| | ||||||    
T  53184978 ttgttagataaagtaaaatcacataccttgtggtggttgaaagttagttgtgtagtctttaattttggtactcataattgatggtcgagcccgct 53185072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 29524186 - 29524280
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||| ||  |||| |||| ||||||||  || | ||||||||| | ||||||    
T  29524186 ttgttagataaagtaaaatcaaataccttgtggtggttgaaagctagcaacatagtctttatttttggtacacatagttggtggtcgagcccgct 29524280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 292
Target Start/End: Complemental strand, 7032074 - 7031932
Alignment:
Q  150 ttgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaag 249  Q
    |||||||||||||||||||  |   |||| ||||||   |||||||| || || ||| || ||||||| || | ||||| ||| ||||||||| ||||||    
T  7032074 ttgtggaatgagcggaatgccaagatttttagtaatcgacaaagctctttgcctcatatgctagataaggttatatcatcttctttgtggtggttgaaag 7031975  T
Q  250 ctagtaatgtagtttttagttttggtattcacaattggtggtc 292  Q
    ||  ||||||| | ||||| ||||||| ||| |||||||||||    
T  7031974 ctcataatgtaatgtttagctttggtactcagaattggtggtc 7031932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 12342668 - 12342762
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||||||| || |||||| |||| |||||||||| ||  |||| |||| ||||||||  || | ||||||||| | ||||||    
T  12342668 ttgttagataaagtaaaatcaaataccttgtagtggttgaaagctagcaacatagtctttatttttggtacacatagttggtggtcgagcccgct 12342762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 30695784 - 30695878
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||||||| || ||||||||||| ||||||| || ||  |||| |||| ||||||||  || | ||||||||| | ||||||    
T  30695784 ttgttagataaagtaaaatcaaataccttgtggtggttgaaagccagcaacatagtctttatttttggtacacatagttggtggtcgagcccgct 30695878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 36801516 - 36801585
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggta 276  Q
    ||||||||||||||||||||| || ||||||||||| ||||||| | |||  |||| |||| ||||||||    
T  36801516 ttgttagataaagtaaaatcaaataccttgtggtggttgaaagccaataacatagtctttatttttggta 36801585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 20532477 - 20532525
Alignment:
Q  208 tgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaa 256  Q
    |||||||||||||||| ||||| || ||||||||||||||||| |||||    
T  20532477 tgttagataaagtaaagtcatactctttgtggtggctgaaagccagtaa 20532525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 301
Target Start/End: Original strand, 40930912 - 40931063
Alignment:
Q  150 ttgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaag 249  Q
    ||||||||||| || ||||||||  |||| || ||||  ||||| || || |||||  || |||||||||| ||||||  ||| ||||||||| | || |    
T  40930912 ttgtggaatgaacgaaatgataggatttttagaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaagg 40931011  T
Q  250 ctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    || ||||||| ||||||||||| |||| |||  | |||||||| | ||||||    
T  40931012 cttgtaatgttgtttttagtttcggtactcaacagtggtggtcgagcccgct 40931063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 7312482 - 7312409
Alignment:
Q  201 ccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttgg 274  Q
    ||||| ||| |||||||||| ||||||  ||| ||||||||| | || ||||||||||| || |||||||||||    
T  7312482 ccacaattgctagataaagtgaaatcaacttcgttgtggtggttaaaggctagtaatgttgtatttagttttgg 7312409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 19920664 - 19920737
Alignment:
Q  201 ccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttgg 274  Q
    ||||| |||||||||||||| ||||||  | | ||||||||| | |||||||| ||||| || |||||||||||    
T  19920664 ccacaattgttagataaagtgaaatcaactgcgttgtggtggttaaaagctagaaatgttgtatttagttttgg 19920737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 46145571 - 46145238
Alignment:
Q  10 tggtgcgagtttggcttggtgttggtggggtagaaactcagttcataacagaccattgtttgcagtttattaattatgtaggtggtttgagagcacaacg 109  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| |||||||||  ||    
T  46145571 tggtgcgagcttggcttggtgttgttggggtcgaaactcagttcataacagaccattttttgcaatttattaattatgcaggtggtatgagagcacggcg 46145472  T
Q  110 gtcnnnnnnncatctaatttggctgttgtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttg 209  Q
     ||       ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||| ||||| ||||||    
T  46145471 ttcttttttccatctaatttggcttatgtgtgtttggatattgtggaatgagcggaatgatagagttttctgaaataaacacagctctttaccgcatttg 46145372  T
Q  210 ttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgta 309  Q
    ||||||||||||||||||| |||||| || ||| |||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  46145371 ttagataaagtaaaatcatgttccttatgatggatgaaagttagtaatgtagtttttagttttggtattcataattggtggtcgaacccgctcatttgta 46145272  T
Q  310 tgggtatcgactaactgccttgtatcattgacta 343  Q
    ||||||||||||||||| ||||||||||||||||    
T  46145271 tgggtatcgactaactgtcttgtatcattgacta 46145238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 10 - 343
Target Start/End: Original strand, 19740284 - 19740617
Alignment:
Q  10 tggtgcgagtttggcttggtgttggtggggtagaaactcagttcataacagaccattgtttgcagtttattaattatgtaggtggtttgagagcacaacg 109  Q
    ||||||||| |||||||||||| | |||||| ||||||||||| ||| |||||||||  || || ||||||||||||||||||||||||||||| || |     
T  19740284 tggtgcgagcttggcttggtgtggttggggtcgaaactcagtttatagcagaccatttcttacaatttattaattatgtaggtggtttgagagcgcatca 19740383  T
Q  110 gtcnnnnnnncatctaatttggctgttgtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttg 209  Q
     ||        ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||  || | ||| ||    
T  19740384 ttcctttttctatctaatttggctcttgtgtgtttggattttgtggaatgagcggaatgatagagttttcagaaataaacaaagctctctatcgcatatg 19740483  T
Q  210 ttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgta 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||  ||||||||||| ||||    
T  19740484 ttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgttgtttttacttttggtactcataattggtggttgaacccgctcatatgta 19740583  T
Q  310 tgggtatcgactaactgccttgtatcattgacta 343  Q
    || |||||||| ||||| |||||| || ||||||    
T  19740584 tgagtatcgacgaactgtcttgtaacactgacta 19740617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 190 - 350
Target Start/End: Original strand, 36223513 - 36223673
Alignment:
Q  190 aaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||    
T  36223513 aaagctccttaccacatttgttagataaagtaaaatcatattccttgtgatagctgaaagctagtaatgtagtttttagttttggtattcacaactggtg 36223612  T
Q  290 gtcaaacccgctcatttgtatgggtatcgactaactgccttgtatcattgactactctgtg 350  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36223613 gtcgaacccgctcatttgtatgggtatcgactaactgccttgtatcattgactactctgtg 36223673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 48242085 - 48241959
Alignment:
Q  200 accacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccg 299  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| |||||| ||||||||| |||||||| || |||||||| | ||||||||  || |||    
T  48242085 accacatatgttagataaagtaaaatcatattccttgtgttggttgaaagttagtaatgttgtttttagcttcggtattcatagttggtggttgaatccg 48241986  T
Q  300 ctcatttgtatgggtatcgactaactg 326  Q
    ||| | |||||||| ||||||| ||||    
T  48241985 ctcttatgtatgggcatcgactgactg 48241959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 54483595 - 54483712
Alignment:
Q  202 cacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| || ||||  ||||||| ||| ||||||||||| | ||||||    
T  54483595 cacagttgttagataaagtaaaatcaaataccttgtggtggctgaaagctagtaatgtggtctttacatttggtactcataattggtggtcgaccccgct 54483694  T
Q  302 catttgtatgggtatcga 319  Q
      | |||||||| |||||    
T  54483695 tgtatgtatgggcatcga 54483712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 202 - 319
Target Start/End: Complemental strand, 48311794 - 48311677
Alignment:
Q  202 cacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    |||| ||||||||||||||||||||| || |  |||| |||||||||||||||||||| || |||| |||||||| ||| ||||||||||| | ||||||    
T  48311794 cacagttgttagataaagtaaaatcaaatactctgtgatggctgaaagctagtaatgtggtctttacttttggtactcataattggtggtcgagcccgct 48311695  T
Q  302 catttgtatgggtatcga 319  Q
      | ||||||||||||||    
T  48311694 tgtatgtatgggtatcga 48311677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 301
Target Start/End: Original strand, 55726028 - 55726128
Alignment:
Q  201 ccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgc 300  Q
    |||| |||||||||||||||||||||  || ||||||||||| |||||||||||||||| || |||| ||||||||| || ||||||||||| | |||||    
T  55726028 ccacttttgttagataaagtaaaatctcataccttgtggtggttgaaagctagtaatgtggtctttaattttggtatacataattggtggtcgagcccgc 55726127  T
Q  301 t 301  Q
    |    
T  55726128 t 55726128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 199 - 326
Target Start/End: Original strand, 5790521 - 5790648
Alignment:
Q  199 taccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaaccc 298  Q
    |||||||  |||||||| |||| ||||| ||||| ||||||||| |||||||||||||||| || ||||| || |||||||| | ||||||||| |||||    
T  5790521 taccacaactgttagatcaagttaaatcctattcgttgtggtggttgaaagctagtaatgttgtgtttagcttcggtattcatagttggtggtcgaaccc 5790620  T
Q  299 gctcatttgtatgggtatcgactaactg 326  Q
    |||| | |||||||| ||| ||| ||||    
T  5790621 gctcttatgtatgggcatcaactgactg 5790648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 153 - 292
Target Start/End: Original strand, 23163019 - 23163157
Alignment:
Q  153 tggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagcta 252  Q
    |||||||||||||||||||||||||| || || |  || ||||| ||| ||||  || |||| ||||||||||||| ||| ||||||||| | |||||||    
T  23163019 tggaatgagcggaatgatagagtttttagaaacaggcagagctctttatcacaaatg-tagacaaagtaaaatcatcttctttgtggtggttaaaagcta 23163117  T
Q  253 gtaatgtagtttttagttttggtattcacaattggtggtc 292  Q
    ||||||| |||||||| | ||||| ||| |||||||||||    
T  23163118 gtaatgttgtttttagctatggtactcataattggtggtc 23163157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 319
Target Start/End: Complemental strand, 20002417 - 20002305
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcattt 306  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||||   | |||| |||| ||||||||  |||||||||||||| | ||||||  | |    
T  20002417 ttgttagataaagtaaaatcacataccttgtggtggttgaaagctagccgtttagtctttaattttggtacacacaattggtggtcgagcccgcttttat 20002318  T
Q  307 gtatgggtatcga 319  Q
    ||||| |||||||    
T  20002317 gtatgagtatcga 20002305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 5148360 - 5148305
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagt 262  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  5148360 ttgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatgtagt 5148305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 11587630 - 11587708
Alignment:
Q  198 ttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggta 276  Q
    ||||||||  ||||||| ||||||||||||| ||| ||||||||| | |||||||||||||| |||||||| |||||||    
T  11587630 ttaccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaatgttgtttttagctttggta 11587708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 301
Target Start/End: Original strand, 17402057 - 17402221
Alignment:
Q  137 gtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttg 236  Q
    |||||||||  | ||||||||||| |||||||||||  | || || || |   ||||||| ||||||||| ||||||||||||||||||||| ||| |||    
T  17402057 gtgtgtttgagttttgtggaatgaacggaatgataggctatttagaaacagaaaaagctctttaccacatatgttagataaagtaaaatcatcttctttg 17402156  T
Q  237 tggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    |||| | | || ||||||||||| ||  ||   ||||||| ||| ||||||||||| | ||||||    
T  17402157 tggtagttaaaggctagtaatgttgtagttcactttggtactcataattggtggtcgagcccgct 17402221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 322
Target Start/End: Complemental strand, 12697512 - 12697397
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcattt 306  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||| ||  |||| |||| ||||||||  || | ||||||||| | ||||||  | |    
T  12697512 ttgttagataaagtaaaatcaaataccttgtggtggttgaaagctagcaacatagtctttatttttggtacacatagttggtggtcgagcccgcttctat 12697413  T
Q  307 gtatgggtatcgacta 322  Q
    ||||||| || |||||    
T  12697412 gtatgggcattgacta 12697397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 2822470 - 2822572
Alignment:
Q  199 taccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaaccc 298  Q
    ||||||| |||||||||||||| |||||| ||||  |||||||| ||||||||||||||||  | |||| |||||||| ||| | ||| ||||| | |||    
T  2822470 taccacagttgttagataaagtgaaatcaaattctctgtggtggttgaaagctagtaatgtgttctttacttttggtactcatagttgatggtcgagccc 2822569  T
Q  299 gct 301  Q
    |||    
T  2822570 gct 2822572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 8360799 - 8360705
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||||||| || |||| |||||| ||||||| |||||  |||| |||| ||||||||  || | ||||||||| ||| ||||    
T  8360799 ttgttagataaagtaaaatcaaataccttatggtggttgaaagccagtaacatagtctttatttttggtacacatagttggtggtcgaactcgct 8360705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 7403607 - 7403526
Alignment:
Q  211 tagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtc 292  Q
    |||||||||| ||||||||||| ||||||||| | ||| || | ||||| || ||||| |||| |||||| |||||||||||    
T  7403607 tagataaagtgaaatcatattctttgtggtggttaaaaactcgcaatgttgtatttagctttgatattcataattggtggtc 7403526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 322
Target Start/End: Original strand, 4548660 - 4548775
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcattt 306  Q
    ||||||||||||||||||||| ||  |||||||||| ||||||| || ||  |||| |||| ||||||||  || | ||||||||| | ||||||  | |    
T  4548660 ttgttagataaagtaaaatcaaatatcttgtggtggttgaaagccagcaacatagtctttatttttggtacacatagttggtggtcgagcccgcttctat 4548759  T
Q  307 gtatgggtatcgacta 322  Q
    ||||||| || |||||    
T  4548760 gtatgggcattgacta 4548775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 301
Target Start/End: Complemental strand, 15739916 - 15739826
Alignment:
Q  211 tagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    |||||||||| ||||||  ||| ||||||||||| || ||||| ||||| || ||||||||||||| |||  | |||||||| | ||||||    
T  15739916 tagataaagtgaaatcaacttctttgtggtggctaaaggctagcaatgttgtatttagttttggtactcaacagtggtggtcgagcccgct 15739826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 323
Target Start/End: Original strand, 20788663 - 20788837
Alignment:
Q  150 ttgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaag 249  Q
    ||||||||||| |||||||| |   |||| || ||||  |||||||| || |||||  || ||||||| || | ||||| ||| ||||||||| | ||||    
T  20788663 ttgtggaatgaacggaatgacatgatttttagaaatagacaaagctctttgccacaaatgctagataaggttatatcatcttctttgtggtggttaaaag 20788762  T
Q  250 ctagtaa-tgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgtatgggtatcgactaa 323  Q
    ||  ||| ||| || ||||| ||||||| ||| ||||||||||| ||||||||  | ||| ||||||| ||||||    
T  20788763 ctcataaatgttgtgtttagctttggtactcagaattggtggtcgaacccgctgttatgtttgggtattgactaa 20788837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 13937596 - 13937263
Alignment:
Q  10 tggtgcgagtttggcttggtgttggtggggtagaaactcagttcataacagaccattgtttgcagtttattaattatgtaggtggtttgagagcacaacg 109  Q
    |||||| || ||||||| |||||| | |||| ||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| ||||||||| |||    
T  13937596 tggtgcaagcttggcttagtgttgctagggtcgaaactcagttcataacagaccattttttgcaatttattaattatgcaggtggtatgagagcacgacg 13937497  T
Q  110 gtcnnnnnnncatctaatttggctgttgtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttg 209  Q
     ||       |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||||  | ||||| ||||  ||||||    
T  13937496 ttcttttttccatctaatttggcttttgtgtgtttggatattgtggaatgagcggaatgatagagttttccaaaataaatatagctctttactgcatttg 13937397  T
Q  210 ttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgta 309  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  13937396 ttagataaagtaaaatcatgttccttgtggtggatgaaagctagtaatgtagtttttagttttggtattcataattggtggtcgaacccgctcatttgta 13937297  T
Q  310 tgggtatcgactaactgccttgtatcattgacta 343  Q
    ||||||||||||||||| ||||||||||||||||    
T  13937296 tgggtatcgactaactgtcttgtatcattgacta 13937263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 15959201 - 15959371
Alignment:
Q  153 tggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagcta 252  Q
    |||||||| |||||||||||| |||| || || || || || || ||||||||  ||||||| ||||||||||||| ||| ||||||||| | |||| ||    
T  15959201 tggaatgatcggaatgatagaatttttagaaacaagcagagttctttaccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagtta 15959300  T
Q  253 gtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgtatgggtatcgactaa 323  Q
    ||||||| |||||||||||||||| ||| ||||||||||| | ||| ||  | |||||||| |||||||||    
T  15959301 gtaatgttgtttttagttttggtactcataattggtggtcgagcccacttttatgtatgggcatcgactaa 15959371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 18682889 - 18683011
Alignment:
Q  150 ttgtggaatgagcggaatgatagag-ttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaa 248  Q
    |||||||||||||| ||| |||||| ||||||| || || ||||||||  |||| ||| ||||||||||||||||||||| ||||||||| |||||||||    
T  18682889 ttgtggaatgagcgaaatcatagagcttttcaggaacaaacaaagctcgctaccgcatatgttagataaagtaaaatcattttccttgtgctggctgaaa 18682988  T
Q  249 gctagtaatgtagtttttagttt 271  Q
    || |||||||| |||||||||||    
T  18682989 gcgagtaatgttgtttttagttt 18683011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 319
Target Start/End: Complemental strand, 11462114 - 11462002
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcattt 306  Q
    ||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||| |||| ||||||||  || ||||||||||| | ||||||  | |    
T  11462114 ttgttggataaagtaaaatcacataccttgtggtggttgaaagctagtaatgtagtctttaattttggtacacataattggtggtcgagcccgcttttat 11462015  T
Q  307 gtatgggtatcga 319  Q
    |||||||||||||    
T  11462014 gtatgggtatcga 11462002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 153 - 292
Target Start/End: Original strand, 14373378 - 14373517
Alignment:
Q  153 tggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagcta 252  Q
    ||||||||||||||||||| |||||| || || |  || || || ||| ||||  ||||||| ||||||||||||| ||| ||||||||| | |||||||    
T  14373378 tggaatgagcggaatgatatagtttttagaaacatgcagagttctttatcacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagcta 14373477  T
Q  253 gtaatgtagtttttagttttggtattcacaattggtggtc 292  Q
    ||||||| |||||||| | ||||||||| |||||||||||    
T  14373478 gtaatgttgtttttagctatggtattcataattggtggtc 14373517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 292
Target Start/End: Complemental strand, 32536646 - 32536509
Alignment:
Q  155 gaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagt 254  Q
    |||||| |||||||||||| |||| || || |  || ||||| ||||||||  ||||||| ||||||||||||| ||| || |||||| | ||||||| |    
T  32536646 gaatgatcggaatgatagaatttttagaaacaggcacagctctttaccacaaatgttagacaaagtaaaatcatcttctttttggtggttaaaagctatt 32536547  T
Q  255 aatgtagtttttagttttggtattcacaattggtggtc 292  Q
    ||||| |||||||||||||||| | | |||||||||||    
T  32536546 aatgttgtttttagttttggtactaataattggtggtc 32536509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 12429055 - 12429137
Alignment:
Q  189 caaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttt 271  Q
    ||||||||  |||||||| ||||||||||||||||||||||||| ||||||| | |||||||||||||| | || ||||||||    
T  12429055 caaagctctataccacatatgttagataaagtaaaatcatattctttgtggtagttgaaagctagtaatattgtctttagttt 12429137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 20883471 - 20883537
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttg 273  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| |||| |||||    
T  20883471 ttgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatgtagtctttaattttg 20883537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 323
Target Start/End: Original strand, 18651618 - 18651791
Alignment:
Q  150 ttgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaag 249  Q
    ||||||||||| |||||||| | | |||| || ||||  |||||||| || |||||  || ||||||| || | ||||| ||| ||||||||| | ||||    
T  18651618 ttgtggaatgaacggaatgacaaaatttttagaaatagacaaagctctttgccacaaatgctagataaggttatatcatcttctttgtggtggttaaaag 18651717  T
Q  250 ctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgtatgggtatcgactaa 323  Q
    ||  |||||| || ||||||||||||| ||| ||||||||||| ||||||||  | ||| ||||||| ||||||    
T  18651718 ctcataatgttgtgtttagttttggtactcagaattggtggtcgaacccgctgttatgtttgggtattgactaa 18651791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 292
Target Start/End: Original strand, 24767808 - 24767950
Alignment:
Q  150 ttgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaag 249  Q
    ||||||||||| || ||||| | | |||| || ||||  |||||||| || |||||  || |||||||||| ||||||| ||| ||||||||| | ||||    
T  24767808 ttgtggaatgaacgtaatgacataatttttagaaatagacaaagctctttgccacaaatgctagataaagtgaaatcatcttctttgtggtggttaaaag 24767907  T
Q  250 ctagtaatgtagtttttagttttggtattcacaattggtggtc 292  Q
    || ||||||  || |||||||| |||||||| |||||||||||    
T  24767908 cttgtaatgctgtatttagtttgggtattcataattggtggtc 24767950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 17606775 - 17606869
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||| ||  |||| |||| ||||||||  || | ||||||||| | ||||||    
T  17606775 ttgttagataaagtaaaatcaaataccttgtggtggttgaaagctagcaacatagtctttatttttggtacacatagttggtggtcgagcccgct 17606869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 10929745 - 10929814
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggta 276  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||| ||  |||| |||| ||||||||    
T  10929745 ttgttagataaagtaaaatcaaataccttgtggtggttgaaagctagcaacatagtctttatttttggta 10929814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 17330669 - 17330554
Alignment:
Q  208 tgttagataaagtaaaatcatattccttgtggtggctgaaag-------ctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgc 300  Q
    ||||||||||||||||||||||||| ||||||||| ||||||        ||||||||| || |||||||| || | | | ||||||||||||||||| |    
T  17330669 tgttagataaagtaaaatcatattctttgtggtggttgaaagttagtaaatagtaatgttgtatttagtttcggaacttataattggtggtcaaacccac 17330570  T
Q  301 tcatttgtatgggtat 316  Q
    |||| ||| |||||||    
T  17330569 tcatatgtctgggtat 17330554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 215102 - 215033
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggta 276  Q
    ||||||||||||||||||||| || ||||||||||| ||||||| || ||  |||| |||| ||||||||    
T  215102 ttgttagataaagtaaaatcaaataccttgtggtggttgaaagccagcaacatagtctttatttttggta 215033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 274
Target Start/End: Complemental strand, 12733881 - 12733757
Alignment:
Q  150 ttgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaag 249  Q
    |||||||||||  ||||||||||  |||| || ||||  |||||  | || ||||| ||| |||||||||| ||||||  ||| ||||||||| | || |    
T  12733881 ttgtggaatgaaaggaatgataggctttttagaaatagacaaagtacgttgccacaattgctagataaagtgaaatcaacttctttgtggtggttaaagg 12733782  T
Q  250 ctagtaatgtagtttttagttttgg 274  Q
    |||||||||| || |||||||||||    
T  12733781 ctagtaatgttgtatttagttttgg 12733757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 33185134 - 33185084
Alignment:
Q  208 tgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatg 258  Q
    ||||||||||||| || |||||| | ||||||||| |||||||||||||||    
T  33185134 tgttagataaagtgaattcatatgctttgtggtggttgaaagctagtaatg 33185084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 276
Target Start/End: Original strand, 5734626 - 5734751
Alignment:
Q  151 tgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagc 250  Q
    |||||||||| ||||||||||   |||| || ||||  ||||| || || |||||  || |||||||||| ||||||  ||| ||||||||| | || ||    
T  5734626 tgtggaatgaacggaatgataagatttttagaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggc 5734725  T
Q  251 tagtaatgtagtttttagttttggta 276  Q
    | ||||||| || |||||||||||||    
T  5734726 ttgtaatgttgtatttagttttggta 5734751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 10577673 - 10577742
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggta 276  Q
    ||||||||||||||||||||| || ||||||||||| || |||| || ||  |||| |||| ||||||||    
T  10577673 ttgttagataaagtaaaatcaaataccttgtggtggttggaagccagcaacatagtctttatttttggta 10577742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 12674561 - 12674602
Alignment:
Q  211 tagataaagtaaaatcatattccttgtggtggctgaaagcta 252  Q
    ||||||||||||| |||||||| |||||||||||||| ||||    
T  12674561 tagataaagtaaattcatattcattgtggtggctgaatgcta 12674602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 33169554 - 33169221
Alignment:
Q  10 tggtgcgagtttggcttggtgttggtggggtagaaactcagttcataacagaccattgtttgcagtttattaattatgtaggtggtttgagagcacaacg 109  Q
    ||||||||| |||||||||||||| ||| || ||||||||||||||||||||||||| | |||| ||||||||||||| ||||||| |||||||||  ||    
T  33169554 tggtgcgagcttggcttggtgttgttggagtcgaaactcagttcataacagaccattttctgcaatttattaattatgcaggtggtatgagagcacggcg 33169455  T
Q  110 gtcnnnnnnncatctaatttggctgttgtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttg 209  Q
     ||       ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | |||||  | ||||| ||||| ||||||    
T  33169454 ttcctttttccatctaatttggcttctgtgtgtttggatattgtggaatgagcggaatgatagagttttccgaaataaatatagctctttaccgcatttg 33169355  T
Q  210 ttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgta 309  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  33169354 ttagataaagtaaaatcatgttccttgtggtggatgaaagctagtaatgtagtttttagttttggtatttataattggtggtcgaacccgctcatttgta 33169255  T
Q  310 tgggtatcgactaactgccttgtatcattgacta 343  Q
    ||||||| ||||||||  ||||||||||||||||    
T  33169254 tgggtattgactaactatcttgtatcattgacta 33169221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 24407849 - 24407516
Alignment:
Q  9 ttggtgcgagtttggcttggtgttggtggggtagaaactcagttcataacagaccattgtttgcagtttattaattatgtaggtggtttgagagcacaac 108  Q
    |||||||||| |||||||||||||| ||||||||||| |||||| |||| |||||| |  ||||| ||||||||||||| |||||| | |||||||| ||    
T  24407849 ttggtgcgagcttggcttggtgttgttggggtagaaaatcagtttataaaagaccactccttgcaatttattaattatgcaggtggctcgagagcacgac 24407750  T
Q  109 ggtcnnnnnnncatctaatttggctgttgtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacattt 208  Q
    | ||       |||| ||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||||| || || |   |||| |||||    
T  24407749 gttctttttt-catcgaatttggcttttgtgtgtttggatattgaggaatgagcggaatgatcgagttttcagaaataagcacagttgtctaccgcattt 24407651  T
Q  209 gttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgt 308  Q
    |||||||||||||||||| |||||||||| |||| ||| ||||||||||   |||||||||||||| ||||| ||||||||||| ||||||||||| |||    
T  24407650 gttagataaagtaaaatcttattccttgtagtggatgagagctagtaattctgtttttagttttggaattcataattggtggtcgaacccgctcatatgt 24407551  T
Q  309 atgggtatcgactaactgccttgtatcattgacta 343  Q
    |||||||||||||| |||  ||||| |||||||||    
T  24407550 atgggtatcgactagctgttttgtaacattgacta 24407516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 9 - 323
Target Start/End: Complemental strand, 32228701 - 32228387
Alignment:
Q  9 ttggtgcgagtttggcttggtgttggtggggtagaaactcagttcataacagaccattgtttgcagtttattaattatgtaggtggtttgagagcacaac 108  Q
    |||||||||| |||||| ||||||| |||| |  | |||||||| |||||||| ||||  ||||| ||||||||||||| |||| |||||||||| | ||    
T  32228701 ttggtgcgagcttggctaggtgttgttgggatcaagactcagtttataacagatcatttcttgcaatttattaattatgcaggttgtttgagagcgcgac 32228602  T
Q  109 ggtcnnnnnnncatctaatttggctgttgtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacattt 208  Q
    | ||       ||||||||||||||  ||||||||||||| ||||||| |||||||||||||| ||||||||| ||||| ||||||||  |||| ||| |    
T  32228601 gttcctttttccatctaatttggctcctgtgtgtttggattttgtggactgagcggaatgataaagttttcagaaataaacaaagctctctaccgcatat 32228502  T
Q  209 gttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgt 308  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||||||| |||||||||||||||| ||| |||||||| || ||||||||||  |||    
T  32228501 gttagataaagtaaaatcatattttttgtggtggttgaaagctagtaatgttgtttttagttttggtactcataattggtgatcgaacccgctcaaatgt 32228402  T
Q  309 atgggtatcgactaa 323  Q
    |||||||||||||||    
T  32228401 atgggtatcgactaa 32228387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 190 - 349
Target Start/End: Original strand, 8941832 - 8941991
Alignment:
Q  190 aaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtg 289  Q
    ||||||| ||||| ||||| ||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8941832 aaagctctttaccgcatttattacataaattaaaatcatgtaccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcataattggtg 8941931  T
Q  290 gtcaaacccgctcatttgtatgggtatcgactaactgccttgtatcattgactactctgt 349  Q
    ||| ||||||||||| | ||| ||||||||| ||||| ||| |||||||||||| |||||    
T  8941932 gtcgaacccgctcatatatataggtatcgaccaactgtcttatatcattgactagtctgt 8941991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 208 - 321
Target Start/End: Complemental strand, 26072591 - 26072478
Alignment:
Q  208 tgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttg 307  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||| || |||||||| | || ||| ||||||||||| ||||||||| | ||    
T  26072591 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatgttgtctttagtttcgatactcataattggtggtcgaacccgctcttatg 26072492  T
Q  308 tatgggtatcgact 321  Q
    ||||||||| ||||    
T  26072491 tatgggtattgact 26072478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 27166375 - 27166459
Alignment:
Q  189 caaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttg 273  Q
    ||||||||  |||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||  | ||||||||||    
T  27166375 caaagctctataccacatatgttagataaagtaaaatcatattctttgtggtggttgaaagctagtaatgttatctttagttttg 27166459  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 319
Target Start/End: Complemental strand, 27795187 - 27795070
Alignment:
Q  202 cacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    |||| ||||||||||||||||||||| || || ||||||||||||||||| ||||||| || ||||  ||||||| ||| ||||||||||| | ||||||    
T  27795187 cacagttgttagataaagtaaaatcaaataccctgtggtggctgaaagctcgtaatgtggtctttacatttggtactcataattggtggtcgagcccgct 27795088  T
Q  302 catttgtatgggtatcga 319  Q
      | |||||||| |||||    
T  27795087 tgtatgtatgggcatcga 27795070  T

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Target: chr5; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 126 - 301
Target Start/End: Original strand, 18090122 - 18090297
Alignment:
Q  126 atttggctgttgtgtgtttggatattgtggaatgagcggaatgatagagtt-ttcagtaataaccaaagctccttaccacatttgttagataaagtaaaa 224  Q
    |||||||| |||||||||||| | |||||||| || | ||| || | |||| ||||| ||||  || ||||| ||||| ||| |||||||||||||||||    
T  18090122 atttggcttttgtgtgtttgggttttgtggaaagatcagaacgaca-agttattcaggaatactcatagctctttaccgcatatgttagataaagtaaaa 18090220  T
Q  225 tcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    || ||||| ||||||||| |||| ||| ||||||| |  ||||| ||| ||| ||| |||||||||||||| |||||    
T  18090221 tcctattcattgtggtggttgaaggctggtaatgttgcctttagatttagtactcaaaattggtggtcaaatccgct 18090297  T

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Target: chr5; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 10774150 - 10774056
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||||||| || ||||||||||| ||||||| |||||  |||| |||| ||||||||| || | ||||||||| ||||||||    
T  10774150 ttgttagataaagtaaaatcaaataccttgtggtggttgaaagccagtaacatagtctttatttttggtatacatagttggtggtcgaacccgct 10774056  T

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Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 18359531 - 18359600
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggta 276  Q
    ||||||||||||||||||||| || | ||||||||| ||||||||||||||||||| |||| ||||||||    
T  18359531 ttgttagataaagtaaaatcacatactttgtggtggttgaaagctagtaatgtagtctttaattttggta 18359600  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 312
Target Start/End: Original strand, 17106695 - 17106808
Alignment:
Q  199 taccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaaccc 298  Q
    |||||||  ||||||||||||| ||||| ||||  ||||||||| |||||| ||||||||| || ||||| || | |||||| | ||||||||| |||||    
T  17106695 taccacaactgttagataaagttaaatcctatttgttgtggtggttgaaagatagtaatgttgtgtttagcttcgatattcatagttggtggtcgaaccc 17106794  T
Q  299 gctcatttgtatgg 312  Q
    |||| | |||||||    
T  17106795 gctcttatgtatgg 17106808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 18148173 - 18148228
Alignment:
Q  201 ccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaa 256  Q
    |||||| |||||||||||||||||||||| || ||||||||| |||||||||||||    
T  18148173 ccacatatgttagataaagtaaaatcatactctttgtggtggttgaaagctagtaa 18148228  T

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Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 301
Target Start/End: Original strand, 19255547 - 19255658
Alignment:
Q  190 aaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtg 289  Q
    ||||||| || |||||| ||||||||||||| ||||||| ||| ||||||||| | ||| ||  |||||| || ||||||||||||| ||| | ||||||    
T  19255547 aaagctctttgccacatatgttagataaagtcaaatcatcttctttgtggtggttaaaacctcataatgttgtatttagttttggtactcatatttggtg 19255646  T
Q  290 gtcaaacccgct 301  Q
    ||| | ||||||    
T  19255647 gtcgagcccgct 19255658  T

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Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 8300627 - 8300717
Alignment:
Q  211 tagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||  |||| |||| ||||||||  || | ||||||||| | ||||||    
T  8300627 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaacatagtctttatttttggtacacatagttggtggtcgagcccgct 8300717  T

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Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 301
Target Start/End: Complemental strand, 31641512 - 31641362
Alignment:
Q  151 tgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagc 250  Q
    |||||||||| |||||||||||  |||| || ||||  ||||| || || |||||  || |||||||||| ||||||  ||| ||||||||| | || ||    
T  31641512 tgtggaatgaacggaatgataggatttttagaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttcgttgtggtggttaaaggc 31641413  T
Q  251 tagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    | ||||||| || ||||||||||||| |||| | |||||||| | ||||||    
T  31641412 ttgtaatgttgtatttagttttggtactcaccagtggtggtcgagcccgct 31641362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 276
Target Start/End: Original strand, 35984151 - 35984300
Alignment:
Q  126 atttggctgttgtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaat 225  Q
    ||||||||| | ||||||| | | ||||||||||| |||||||||||  |||| || ||||  ||||| || || |||||  || |||||||||| ||||    
T  35984151 atttggctgctttgtgtttcggtgttgtggaatgaacggaatgataggatttt-agaaatagacaaagttctttgccacaaatgctagataaagtgaaat 35984249  T
Q  226 catattccttgtggtggctgaaagctagtaatgtagtttttagttttggta 276  Q
    ||  ||| ||||||||| | || ||| ||||||| ||||||||||||||||    
T  35984250 caacttctttgtggtggttaaaggcttgtaatgttgtttttagttttggta 35984300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 42927848 - 42927745
Alignment:
Q  189 caaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggt 288  Q
    |||||||| || |||||  || |||||||||| ||||||| ||| ||||||||| | |||||| ||||||| || ||||| |||| || ||| |||||||    
T  42927848 caaagctctttgccacaaatgctagataaagttaaatcatcttctttgtggtggttaaaagctcgtaatgttgtatttagctttgatactcataattggt 42927749  T
Q  289 ggtc 292  Q
    ||||    
T  42927748 ggtc 42927745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 27766742 - 27766673
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggta 276  Q
    ||||||||||||||||||||  || ||||||||||| |||||||||| ||  |||| |||| ||||||||    
T  27766742 ttgttagataaagtaaaatcgaataccttgtggtggttgaaagctagcaacatagtctttatttttggta 27766673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 33385815 - 33385884
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggta 276  Q
    ||||||||||||||||||||| || ||||||||||| ||||||  |||||  |||| |||| ||||||||    
T  33385815 ttgttagataaagtaaaatcaaataccttgtggtggttgaaagtcagtaacatagtctttatttttggta 33385884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 26019431 - 26019503
Alignment:
Q  220 taaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtc 292  Q
    |||||||||  || ||||||||| |||||| |||||||||| |||||| |||||| || || |||||||||||    
T  26019431 taaaatcatgctctttgtggtggttgaaagttagtaatgtaatttttaattttggaatgcataattggtggtc 26019503  T

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Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 12824906 - 12824831
Alignment:
Q  199 taccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttgg 274  Q
    ||||||| ||| |||||||||| ||||||  ||| ||||||||| | || ||||||||||| || |||||||||||    
T  12824906 taccacaattgctagataaagtgaaatcaacttcgttgtggtggttaaaggctagtaatgttgtatttagttttgg 12824831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 25857869 - 25857959
Alignment:
Q  211 tagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||| ||| || ||||||||||| |||| ||||||||  |||| |||| ||||||||  || | ||||||||| | ||||||    
T  25857869 tagataaagtaaactcaaataccttgtggtggttgaacgctagtaacatagtctttatttttggtacacatagttggtggtcgagcccgct 25857959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 29142508 - 29142438
Alignment:
Q  198 ttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttag 268  Q
    ||||||||  ||||||| |||||||||||||  || ||||||||| | ||||||| |||||| ||||||||    
T  29142508 ttaccacaaatgttagacaaagtaaaatcatcatctttgtggtggttaaaagctaataatgttgtttttag 29142438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 301
Target Start/End: Complemental strand, 23238165 - 23237988
Alignment:
Q  124 taatttggctgttgtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaa 223  Q
    |||||||| || | ||||||| | | |||||||||||  ||||||||||  |||| || ||||  |||||  | || |||||  || ||||||| || ||    
T  23238165 taatttggttgctttgtgttttggtgttgtggaatgaaaggaatgataggatttttagaaatagacaaagtactttgccacagatgctagataatgtgaa 23238066  T
Q  224 atcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||  ||| ||||||||| | || ||||| ||||| |||||||||||||||| |||  | |||||||| | ||||||    
T  23238065 atcaacttctttgtggtggttaaaggctagcaatgttgtttttagttttggtactcatcagtggtggtcgagcccgct 23237988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 27117596 - 27117669
Alignment:
Q  201 ccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttgg 274  Q
    ||||| ||| |||||||||| ||||||  ||| ||||||||| | || ||||||||||| || |||||||||||    
T  27117596 ccacaattgctagataaagtgaaatcaacttctttgtggtggttaaaggctagtaatgttgtatttagttttgg 27117669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 59 - 321
Target Start/End: Original strand, 12257740 - 12258006
Alignment:
Q  59 agaccattgtttgcagtttattaattatgtaggtggtttgagagcacaacggtcnnnnnnncatctaatttggctgttgtgtgtttggatattgtggaat 158  Q
    ||||||||  ||||| || |||||||||  ||||||||||||| | ||||| ||       || || || ||||| || ||||||||| | |||||||||    
T  12257740 agaccatttcttgcaattcattaattattcaggtggtttgagatcgcaacgctcgttttttcaccttatatggctcttatgtgtttgggtgttgtggaat 12257839  T
Q  159 gagcggaat----gatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagt 254  Q
    |||||||||    |||||||||||||| ||||| ||||||||  || | ||| |||||||||||||||||||||||| | |||||||| |||||||||||    
T  12257840 gagcggaattaatgatagagttttcaggaataaacaaagctcactatcgcatatgttagataaagtaaaatcatattacatgtggtggttgaaagctagt 12257939  T
Q  255 aatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgtatgggtatcgact 321  Q
    || || |||| ||||||||||| ||| || |||||||| ||||||||| | |||||| |||||||||    
T  12257940 aacgttgtttctagttttggtactcataactggtggtcgaacccgctcttatgtatgagtatcgact 12258006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 59 - 321
Target Start/End: Original strand, 12265132 - 12265398
Alignment:
Q  59 agaccattgtttgcagtttattaattatgtaggtggtttgagagcacaacggtcnnnnnnncatctaatttggctgttgtgtgtttggatattgtggaat 158  Q
    ||||||||  ||||| || |||||||||  ||||||||||||| | ||||| ||       || || || ||||| || ||||||||| | |||||||||    
T  12265132 agaccatttcttgcaattcattaattattcaggtggtttgagatcgcaacgctcgttttttcaccttatatggctcttatgtgtttgggtgttgtggaat 12265231  T
Q  159 gagcggaat----gatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagt 254  Q
    |||||||||    |||||||||||||| ||||| ||||||||  || | ||| |||||||||||||||||||||||| | |||||||| |||||||||||    
T  12265232 gagcggaattaatgatagagttttcaggaataaacaaagctcactatcgcatatgttagataaagtaaaatcatattacatgtggtggttgaaagctagt 12265331  T
Q  255 aatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgtatgggtatcgact 321  Q
    || || |||| ||||||||||| ||| || |||||||| ||||||||| | |||||| |||||||||    
T  12265332 aacgttgtttctagttttggtactcataactggtggtcgaacccgctcttatgtatgagtatcgact 12265398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 25090094 - 25089991
Alignment:
Q  199 taccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagtttt-ggtattcacaattggtggtcaaacc 297  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| |||| |||| ||| ||||||||||| | ||    
T  25090094 taccacagttgttagataaagtaaaatcaaattccttgtggtggctgaaagctagtaatgtggtctttacttttgggtactcataattggtggtcgagcc 25089995  T
Q  298 cgct 301  Q
    ||||    
T  25089994 cgct 25089991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 155 - 292
Target Start/End: Original strand, 34137352 - 34137489
Alignment:
Q  155 gaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagt 254  Q
    ||||||||||||||| | | |||| || |||||  | ||||| |||| |||  ||||||| ||||||||||||| ||| ||||||||| | |||||||||    
T  34137352 gaatgagcggaatgacataatttttagaaataagtagagctctttacgacaaatgttagacaaagtaaaatcatcttcattgtggtggttaaaagctagt 34137451  T
Q  255 aatgtagtttttagttttggtattcacaattggtggtc 292  Q
    ||||| |||||||| ||||||| ||| |||||||||||    
T  34137452 aatgttgtttttagctttggtactcataattggtggtc 34137489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 13879923 - 13880040
Alignment:
Q  202 cacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    |||| ||||||||||||||||||||| || || ||||||||||||||||| ||||||| || ||||  ||||||| ||| ||||||||||| |  |||||    
T  13879923 cacagttgttagataaagtaaaatcaaataccctgtggtggctgaaagctcgtaatgtggtctttacatttggtactcataattggtggtcgagtccgct 13880022  T
Q  302 catttgtatgggtatcga 319  Q
      | ||||||||||||||    
T  13880023 tgtatgtatgggtatcga 13880040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 301
Target Start/End: Complemental strand, 2529591 - 2529491
Alignment:
Q  201 ccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgc 300  Q
    |||| |||||||||||||||||||||  || ||||||||||| |||||||||||||||| ||||||| ||||||||  ||  |||||||||| | |||||    
T  2529591 ccacttttgttagataaagtaaaatctcataccttgtggtggttgaaagctagtaatgtggtttttaattttggtacacatgattggtggtcgagcccgc 2529492  T
Q  301 t 301  Q
    |    
T  2529491 t 2529491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 301
Target Start/End: Complemental strand, 13199828 - 13199728
Alignment:
Q  201 ccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgc 300  Q
    |||| |||||||||||||||||||||  || |||||||||||  ||||||||||||||| || |||| ||||||||  || ||||||||||| | |||||    
T  13199828 ccacttttgttagataaagtaaaatctcataccttgtggtggtcgaaagctagtaatgtggtctttaattttggtacacataattggtggtcgagcccgc 13199729  T
Q  301 t 301  Q
    |    
T  13199728 t 13199728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 301
Target Start/End: Complemental strand, 5181377 - 5181274
Alignment:
Q  198 ttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacc 297  Q
    ||||||||| ||||||||||||||||||||| ||  ||||||||| | |||| ||||||||| || ||||| ||| ||| ||| | |||||||||  |||    
T  5181377 ttaccacatatgttagataaagtaaaatcatcttatttgtggtggttaaaagttagtaatgttgtatttagctttagtactcatacttggtggtcgtacc 5181278  T
Q  298 cgct 301  Q
    ||||    
T  5181277 cgct 5181274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 301
Target Start/End: Complemental strand, 9922357 - 9922206
Alignment:
Q  150 ttgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaag 249  Q
    ||||||||||| |||||||| ||  |||| || ||||  ||||| || || |||||  || |||||||||| ||||||  ||| ||||||||| | || |    
T  9922357 ttgtggaatgaacggaatgaaaggctttttagaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaagg 9922258  T
Q  250 ctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    || ||||||| |||||||||||||||| |||| | |||||||| | ||||||    
T  9922257 cttgtaatgttgtttttagttttggtactcaccagtggtggtcgagcccgct 9922206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 301
Target Start/End: Complemental strand, 2170035 - 2169945
Alignment:
Q  211 tagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||  |||| |||| ||||||||  || | ||||||||| | ||||||    
T  2170035 tagataaagtaaaatcacataccttgtggtggttgaaagctagtaacttagtctttatttttggtacacatagttggtggtcgagcccgct 2169945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 301
Target Start/End: Complemental strand, 20823991 - 20823901
Alignment:
Q  211 tagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||  |||| |||| ||||||||  || | ||||||||| | ||||||    
T  20823991 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaacatagtctttatttttggtacacatagttggtggtcgagcccgct 20823901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 322
Target Start/End: Complemental strand, 37433831 - 37433716
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcattt 306  Q
    ||||||||||||||||||||| || ||||||||||| ||||||| || ||  |||| |||| ||||||||  || | ||||||||| | ||||||  | |    
T  37433831 ttgttagataaagtaaaatcaaataccttgtggtggttgaaagccagcaacatagtctttatttttggtacacatagttggtggtcgagcccgcttctat 37433732  T
Q  307 gtatgggtatcgacta 322  Q
    ||||||| || |||||    
T  37433731 gtatgggcattgacta 37433716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 17699181 - 17699087
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||||||| || ||||||||||| ||||| | |||||  |||| |||| ||||||||  || | ||||||||| | ||||||    
T  17699181 ttgttagataaagtaaaatcaaataccttgtggtggttgaaaaccagtaacatagtctttatttttggtacgcatagttggtggtcgagcccgct 17699087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 29733406 - 29733476
Alignment:
Q  222 aaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtc 292  Q
    |||||| |||| ||||||||| |||||||||||||||| || |||| |||||||| ||| | |||||||||    
T  29733406 aaatcaaattctttgtggtggttgaaagctagtaatgtggtctttacttttggtactcatagttggtggtc 29733476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 43270145 - 43270080
Alignment:
Q  211 tagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggta 276  Q
    ||||||||||||||||| || ||||||||||  |||||||||||||  |||| |||| ||||||||    
T  43270145 tagataaagtaaaatcacataccttgtggtgtttgaaagctagtaacatagtctttatttttggta 43270080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 138 - 301
Target Start/End: Complemental strand, 15917421 - 15917258
Alignment:
Q  138 tgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgt 237  Q
    ||||||||| | ||||||||||| |||||||| ||| | || || ||||  ||||||||  |||||||| ||||||||||||||||||||||||| ||||    
T  15917421 tgtgtttgggttttgtggaatgaacggaatgacagactatttaggaatagacaaagctctataccacatatgttagataaagtaaaatcatattctttgt 15917322  T
Q  238 ggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||| |||||||||||||||| || ||||||||||||| ||| ||||||||||| | ||||||    
T  15917321 ggtggttgaaagctagtaatgttgtctttagttttggtactcataattggtggtcgagcccgct 15917258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 136 - 321
Target Start/End: Complemental strand, 15391913 - 15391728
Alignment:
Q  136 tgtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattcctt 235  Q
    ||||||||||| | ||||||||||| ||||| || ||  | || || || || ||||||||  |||| || |||||||||||||| ||||| ||||||||    
T  15391913 tgtgtgtttgggttttgtggaatgatcggaacgacaggttgtttaggaacaaacaaagctctctaccgcaattgttagataaagttaaatcttattcctt 15391814  T
Q  236 gtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgtatgggtatcgact 321  Q
    ||||||| ||||||||||||| |  |  |||||||| |||| ||| ||||||||||| ||||||||| | ||||||||||||||||    
T  15391813 gtggtggttgaaagctagtaaagctgactttagtttcggtactcataattggtggtcgaacccgctcttatgtatgggtatcgact 15391728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 42563221 - 42563112
Alignment:
Q  150 ttgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaag 249  Q
    |||||||||||| ||||||||||||||||||| ||||| |||| |||  | |  ||| ||||| ||||||||||||||||||||||||||||| ||||||    
T  42563221 ttgtggaatgagaggaatgatagagttttcaggaataaacaaaactctcttctgcatatgttaaataaagtaaaatcatattccttgtggtggttgaaag 42563122  T
Q  250 ctagtaatgt 259  Q
    ||||||||||    
T  42563121 ctagtaatgt 42563112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 292
Target Start/End: Original strand, 17765333 - 17765488
Alignment:
Q  137 gtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttg 236  Q
    |||||||||| | || |||||||| ||||||| |||| |||| || || |  || ||||| |||||||| |||||||| ||||||||||||| ||| |||    
T  17765333 gtgtgtttgggtcttatggaatgatcggaatgttagaatttttagaaacatgcagagctctttaccacaattgttagacaaagtaaaatcatcttctttg 17765432  T
Q  237 tggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtc 292  Q
    ||| || | |||||||||||||| |||||||||||||||| ||| | |||||||||    
T  17765433 tgggggttaaaagctagtaatgttgtttttagttttggtactcatagttggtggtc 17765488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 319
Target Start/End: Complemental strand, 44023069 - 44022949
Alignment:
Q  199 taccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaaccc 298  Q
    ||||||| ||||||||||||||||||||| || || |||||||| |||||||||||||||| || |||| |||||||| ||| ||||||| ||  | |||    
T  44023069 taccacagttgttagataaagtaaaatcaaataccctgtggtggttgaaagctagtaatgtggtctttacttttggtactcataattggtagttgagccc 44022970  T
Q  299 gctcatttgtatgggtatcga 319  Q
    |||  |||||||||| |||||    
T  44022969 gcttgtttgtatgggcatcga 44022949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 33516225 - 33516319
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||||||| || || |||| |||||||| ||| ||||||||||| | ||||||    
T  33516225 ttgttagataaagtaaaatcaaattccatgtggtggttgaaagctagtaacgtggtctttacttttggtactcataattggtggtcgagcccgct 33516319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 40176369 - 40176275
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||||||||||| || |||| |||||| | ||| ||||||||||| | ||||||    
T  40176369 ttgttagataaagtaaaatcaaattccatgtggtggttgaaagctagtaatgtggtctttacttttggaactcataattggtggtcgagcccgct 40176275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 126 - 292
Target Start/End: Complemental strand, 28252500 - 28252335
Alignment:
Q  126 atttggctgttgtgtgtttggatattgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaat 225  Q
    |||||||| | |||| ||||| | || |||||| ||||||  ||||||||||| || || |  || ||||| ||||||||  ||||||| ||||||||||    
T  28252500 atttggctttagtgtatttgggttttatggaattagcggac-gatagagtttttagaaacaggcagagctctttaccacaaatgttagacaaagtaaaat 28252402  T
Q  226 catattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtc 292  Q
    ||| ||| ||||||||| | |||||||||||| | |||||||| | ||||| ||| |||||||||||    
T  28252401 catcttctttgtggtggttaaaagctagtaatattgtttttagctatggtactcataattggtggtc 28252335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 3400680 - 3400623
Alignment:
Q  210 ttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagttttta 267  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  3400680 ttagataaagtaaaatcatataccttgtggtggttgaaagctattaatgtagttttta 3400623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 292
Target Start/End: Complemental strand, 12645241 - 12645150
Alignment:
Q  201 ccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtc 292  Q
    |||| |||||||||||||||||||||  || ||||||||||| | |||||||||||||| || |||| ||||||||  || |||||||||||    
T  12645241 ccacttttgttagataaagtaaaatctcataccttgtggtggttaaaagctagtaatgtggtctttaattttggtacacataattggtggtc 12645150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 320
Target Start/End: Original strand, 38604757 - 38604927
Alignment:
Q  150 ttgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaag 249  Q
    ||||||||||| |||||||| |   | ||||| ||| | ||||||||  ||||||| ||||| || |||||||||||||  |  ||||||||| ||||||    
T  38604757 ttgtggaatgaacggaatgacacgctattcaggaatcaacaaagctctataccacagttgttggaaaaagtaaaatcatgctttttgtggtggttgaaag 38604856  T
Q  250 ctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgtatgggtatcgac 320  Q
    |||||||||| |  |||| |||||| |  || ||||||||||| ||||||||   ||||||||| ||||||    
T  38604857 ctagtaatgtggactttatttttggaacacataattggtggtcgaacccgcttgcttgtatgggcatcgac 38604927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 44473065 - 44473006
Alignment:
Q  199 taccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatg 258  Q
    |||||||  ||||||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  44473065 taccacacctgttagataaagtaaaatcatattctttgtggtggttgaaagctaataatg 44473006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 11000395 - 11000485
Alignment:
Q  211 tagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    |||||||| ||||||   || ||||||||||| |||||||||||||  |||| |||| |||||||||||||| ||||||||| | ||||||    
T  11000395 tagataaattaaaatttcataccttgtggtggttgaaagctagtaacatagtctttatttttggtattcacagttggtggtcgagcccgct 11000485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 301
Target Start/End: Complemental strand, 14439448 - 14439358
Alignment:
Q  211 tagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||| |  ||||||||||| |||||||||||||  |||| |||| ||||||||  || | ||||||||| | ||||||    
T  14439448 tagataaagtaaaatcacaaaccttgtggtggttgaaagctagtaacatagtctttatttttggtacacatagttggtggtcgagcccgct 14439358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 41206723 - 41206614
Alignment:
Q  189 caaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggt 288  Q
    |||||||| ||||||||  ||||||||||||| ||||||| ||| || |||||| | ||| || ||||||| || ||||| ||||||| ||| | ||| |    
T  41206723 caaagctctttaccacacatgttagataaagtcaaatcatcttctttatggtggttaaaatctcgtaatgttgtatttagctttggtactcatatttgat 41206624  T
Q  289 ggtcaaaccc 298  Q
    |||| |||||    
T  41206623 ggtcgaaccc 41206614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 16241565 - 16241529
Alignment:
Q  216 aaagtaaaatcatattccttgtggtggctgaaagcta 252  Q
    |||||||| || |||||||||||||||||||||||||    
T  16241565 aaagtaaagtcttattccttgtggtggctgaaagcta 16241529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 177 - 295
Target Start/End: Original strand, 6420 - 6538
Alignment:
Q  177 ttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggta 276  Q
    ||||| |||||||| ||||| ||||| ||| ||||||||||||||||||| ||||| ||||||||| |||||||||||||||| || |||||||||||||    
T  6420 ttcaggaataaccatagctctttaccgcatatgttagataaagtaaaatcttattcattgtggtggttgaaagctagtaatgttgtatttagttttggta 6519  T
Q  277 ttcacaattggtggtcaaa 295  Q
     ||| ||||||||||||||    
T  6520 ctcaaaattggtggtcaaa 6538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 199 - 323
Target Start/End: Complemental strand, 48394611 - 48394487
Alignment:
Q  199 taccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaaccc 298  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| || |||| ||| |||| ||| ||||||||||| |||||    
T  48394611 taccgcatatgttagataaaataaaatcatattccttgtggtggttgaaagctagtaatgttgtctttaatttcggtactcataattggtggtcgaaccc 48394512  T
Q  299 gctcatttgtatgggtatcgactaa 323  Q
    |||  | |||||||||||| |||||    
T  48394511 gctattatgtatgggtatccactaa 48394487  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 199 - 319
Target Start/End: Complemental strand, 37254465 - 37254345
Alignment:
Q  199 taccacatttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaaccc 298  Q
    ||||||| ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| |||| ||||||||  || ||||||||||| | |||    
T  37254465 taccacaattgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatgtagtctttaattttggtacacataattggtggtcgagccc 37254366  T
Q  299 gctcatttgtatgggtatcga 319  Q
    ||   | ||||||||||||||    
T  37254365 gcatttatgtatgggtatcga 37254345  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 207 - 319
Target Start/End: Complemental strand, 25619158 - 25619046
Alignment:
Q  207 ttgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcattt 306  Q
    ||||||||||||||||||||| || |||| |||||| ||||||||||||||||||| |||| | ||||||  ||||  |||||||  ||||||||  | |    
T  25619158 ttgttagataaagtaaaatcacataccttatggtggttgaaagctagtaatgtagtctttaatgttggtacacacatgtggtggttgaacccgcttttat 25619059  T
Q  307 gtatgggtatcga 319  Q
    |||||||||||||    
T  25619058 gtatgggtatcga 25619046  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 32703580 - 32703519
Alignment:
Q  282 aattggtggtcaaacccgctcatttgtatgggtatcgactaactgccttgtatcattgacta 343  Q
    ||||||||||| || |||||||| ||||| | ||||||||||||| ||||||||||||||||    
T  32703580 aattggtggtcgaatccgctcatatgtatagatatcgactaactgtcttgtatcattgacta 32703519  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 41698608 - 41698692
Alignment:
Q  235 tgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgctcatttgtatgggtatcga 319  Q
    ||||||||||||||||||||||||| || ||||  ||||||| ||| ||||||||||| | ||||||  | |||||||| |||||    
T  41698608 tgtggtggctgaaagctagtaatgtggtctttacatttggtactcataattggtggtcgagcccgcttgtatgtatgggcatcga 41698692  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 301
Target Start/End: Complemental strand, 17720339 - 17720249
Alignment:
Q  211 tagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    |||||||||| ||||||  ||| ||||||||| | || ||| ||||||| |||||||||||||||| |||| | |||||||| | ||||||    
T  17720339 tagataaagtgaaatcaacttctttgtggtggttaaaggcttgtaatgttgtttttagttttggtactcaccagtggtggtcgagcccgct 17720249  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 301
Target Start/End: Complemental strand, 37919242 - 37919149
Alignment:
Q  208 tgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||| ||||||  ||| ||||||||| | || ||||| ||||| || ||||||||||||| |||  | |||||||| ||||||||    
T  37919242 tgttagataaagtgaaatcaacttctttgtggtggttaaaggctagcaatgttgtatttagttttggtactcatcagtggtggtcgaacccgct 37919149  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 276
Target Start/End: Original strand, 235823 - 235949
Alignment:
Q  150 ttgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaag 249  Q
    ||||||||||| || |||||||   |||| || ||||  |||||||| || |||||  || |||||||||| ||||||  ||| ||||||||| | || |    
T  235823 ttgtggaatgaacgaaatgatatgatttttagaaatagacaaagctctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaagg 235922  T
Q  250 ctagtaatgtagtttttagttttggta 276  Q
    || ||||||| || |||||||||||||    
T  235923 cttgtaatgttgtatttagttttggta 235949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 301
Target Start/End: Complemental strand, 18530205 - 18530115
Alignment:
Q  211 tagataaagtaaaatcatattccttgtggtggctgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcaaacccgct 301  Q
    ||||||||||||||||| || ||||||||||| ||||| |||||||  |||| |||| |||| |||  || | ||||||||| | ||||||    
T  18530205 tagataaagtaaaatcacataccttgtggtggttgaaaactagtaacatagtctttattttttgtacacatagttggtggtcgagcccgct 18530115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 47876739 - 47876613
Alignment:
Q  150 ttgtggaatgagcggaatgatagagttttcagtaataaccaaagctccttaccacatttgttagataaagtaaaatcatattccttgtggtggctgaaag 249  Q
    |||||||||||  ||||||||||  |||| || ||||  ||||| || || |||||  || |||| ||||| ||||||  ||| ||||||||| | || |    
T  47876739 ttgtggaatgaaaggaatgataggatttttagaaatagacaaagttctttgccacaaatgctagaaaaagtgaaatcaacttctttgtggtggttaaagg 47876640  T
Q  250 ctagtaatgtagtttttagttttggta 276  Q
    |||||||||| || |||||||||||||    
T  47876639 ctagtaatgttgtatttagttttggta 47876613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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