View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6571_low_12 (Length: 350)
Name: NF6571_low_12
Description: NF6571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6571_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 274
Target Start/End: Complemental strand, 20629659 - 20629395
Alignment:
| Q |
10 |
acatcatcataagaagaatttaaagatttaatgttgattgtttcacaatctagaattagaattttaacaaatttaaaatggtttcaatggttaaatgtta |
109 |
Q |
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| T |
20629659 |
acatcatcataagaagaatttaaagatttaatgttgattgtttcacaatctagaattagaattttaacaaatttaaaatggtttcaatggttaaatgtta |
20629560 |
T |
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| Q |
110 |
acatcttgaaaaaatgtagaatatcagataaaattcattgtgatacgacctaaacaatggtaccaaatgaagtgtaactcactagtcactcatagtcatc |
209 |
Q |
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| T |
20629559 |
acatcttgaaaaaatgtagaatatcagataaaattcattgtgatacgacctaaacaatggtaccaaatgaactgtaactcactagtcactcatagtcatc |
20629460 |
T |
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| Q |
210 |
tacttttcagagtgttaaaatgtgtcagaaagtgtgtgttaaaatgcgtgttactaacattactc |
274 |
Q |
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| T |
20629459 |
tactttccagagtgttaaaatgtgtcagaaagtgtgtgttaaaatgcgtgttactaacattactc |
20629395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 20629345 - 20629266
Alignment:
| Q |
271 |
actcacctcaggcatcttcacattacaaatattcttgaaagatgaagcaagttcataagcccttggatctgtctccttac |
350 |
Q |
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| T |
20629345 |
actcacctcaggcatcttgacattacaaatattcttgaaagatgaagcaagttcataagcccttggatctgtctccttac |
20629266 |
T |
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