View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6571_low_13 (Length: 346)
Name: NF6571_low_13
Description: NF6571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6571_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 24 - 331
Target Start/End: Complemental strand, 16643416 - 16643109
Alignment:
| Q |
24 |
ttcaaagagatggtgaatatgtagactaatttgacccttaataattgatcacaatttgctatcctacacgcagataattagtcacttttggatgtaacga |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16643416 |
ttcaaagaaatggtgaatatgtagactaatttgacccataataattgatcacaatttgctatcctacacgcagataattagtcacttttggatgtaacga |
16643317 |
T |
|
| Q |
124 |
aatagagagactaacgtgtccctcacgcaatttttgtctgaactaatgtgaggattgcatgttatgatatgaaacaaataatgtaagaaaggaaaaaaca |
223 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16643316 |
aatagagagactaacgtgtccctcgcgcaatttttgtctgaactaatgtgaggattgcatgttatgatatgaaacaaataatgtaagaaaggaaaaaaca |
16643217 |
T |
|
| Q |
224 |
aaggagtcccaaaatgaatcatcaaccacattttagataagatatagtttataaactatattttgataatgctgactaggttgagtttcacatgtacaac |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16643216 |
aaggagtcccaaaatgaatcatcaaccacattttagataagatatagtttatatactatattttgagaatgctgactaggttgagtttcacatgtacaac |
16643117 |
T |
|
| Q |
324 |
atatatat |
331 |
Q |
| |
|
|||||||| |
|
|
| T |
16643116 |
atatatat |
16643109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University