View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6571_low_14 (Length: 342)
Name: NF6571_low_14
Description: NF6571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6571_low_14 |
 | |
|
| [»] scaffold0011 (2 HSPs) |
| | |
|
| [»] scaffold0250 (1 HSPs) |
| | |
|
| [»] scaffold0246 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0011 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 3 - 325
Target Start/End: Complemental strand, 185059 - 184737
Alignment:
| Q |
3 |
aattttcactaaaagccccttgtattctttacattggatccgaataaacatatatttccctaacacttttgcttccacttgaaatattgaaccaacaaca |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
185059 |
aattttcactaaaagccccttgtattctttacattggatccgaatcaacatatatttccctaacacttttgcttccacttgaaatattgaaccaacaaca |
184960 |
T |
|
| Q |
103 |
ctttcattgtgctcatcaaatgatgaggaatcatcttcgctgcagaggtctggtttggtcagaatcacatgtgactctgtttttattctcttgttttgtt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
184959 |
ctttcattgtgctcatcaaatgatgaggaatcatcttcgctgcataggtctggtttggtcagaatcacatgtgattctgttttttttctcttgttttgtt |
184860 |
T |
|
| Q |
203 |
cttctaaaacttccaaacgttttttaagctctttcatgtatttgatagtgtcaaccaatacagaaaatttgtccatctaacagatttttacacaatcgat |
302 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
184859 |
cttctaaaacttccaaacgctttttaagctctttcatgtatttgatagtgtcaactaatacagaaaatttgtccatctaacagatttttacacaatcgat |
184760 |
T |
|
| Q |
303 |
tagtgagtagtgtaacatgaata |
325 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
184759 |
tagtgagtagtgtaacatgaata |
184737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 3 - 325
Target Start/End: Complemental strand, 222954 - 222632
Alignment:
| Q |
3 |
aattttcactaaaagccccttgtattctttacattggatccgaataaacatatatttccctaacacttttgcttccacttgaaatattgaaccaacaaca |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
222954 |
aattttcactaaaagccccttgtattctttacattggatccgaatcaacatatatttccctaacacttttgcttccacttgaaatattgaaccaacaaca |
222855 |
T |
|
| Q |
103 |
ctttcattgtgctcatcaaatgatgaggaatcatcttcgctgcagaggtctggtttggtcagaatcacatgtgactctgtttttattctcttgttttgtt |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
222854 |
ctttcattgcgctcatcaaatgatgaggaatcatcttcgctgcagaggtctggtttggtcagaaccacatgcgactctgtttttgttctcttgttttgtt |
222755 |
T |
|
| Q |
203 |
cttctaaaacttccaaacgttttttaagctctttcatgtatttgatagtgtcaaccaatacagaaaatttgtccatctaacagatttttacacaatcgat |
302 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
222754 |
cttctaaaacttccaaacgctttttaagctctttcatgtatttgatagtgtcaaccaatacagaaaatttgtccatctaacagatttttacacaatcgat |
222655 |
T |
|
| Q |
303 |
tagtgagtagtgtaacatgaata |
325 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
222654 |
tagtgagtagtgtaacatgaata |
222632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 3 - 319
Target Start/End: Complemental strand, 16848 - 16532
Alignment:
| Q |
3 |
aattttcactaaaagccccttgtattctttacattggatccgaataaacatatatttccctaacacttttgcttccacttgaaatattgaaccaacaaca |
102 |
Q |
| |
|
|||||| |||| ||||||||||| |||| |||||||||||||| | |||||||||||||| ||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
16848 |
aattttaactataagccccttgtgctcttggcattggatccgaatcagtatatatttccctaagactcttgcttccacttgaaatggtaaaccaacaaca |
16749 |
T |
|
| Q |
103 |
ctttcattgtgctcatcaaatgatgaggaatcatcttcgctgcagaggtctggtttggtcagaatcacatgtgactctgtttttattctcttgttttgtt |
202 |
Q |
| |
|
|| | | || ||||||| ||| ||||||| || || ||| ||| | |||||||||||| |||||| ||||||||| | ||| || ||| ||||||| |
|
|
| T |
16748 |
ctatgaatgctctcatcacatgtagaggaattgtcatcactgtagatgcctggtttggtcacaatcacttgtgactctatctttgttttctcattttgtt |
16649 |
T |
|
| Q |
203 |
cttctaaaacttccaaacgttttttaagctctttcatgtatttgatagtgtcaaccaatacagaaaatttgtccatctaacagatttttacacaatcgat |
302 |
Q |
| |
|
|||| || |||||||||| |||||||||||||||| |||||| |||| |||||| || |||||| | ||||||| |||||| |||||||| |||||| |
|
|
| T |
16648 |
cttccaattcttccaaacgctttttaagctctttcaagtatttaatagcgtcaactaacacagaatacttgtccacctaacatatttttacgatatcgat |
16549 |
T |
|
| Q |
303 |
tagtgagtagtgtaaca |
319 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
16548 |
taatgagtagtgtaaca |
16532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 34 - 315
Target Start/End: Complemental strand, 17125659 - 17125378
Alignment:
| Q |
34 |
cattggatccgaataaacatatatttccctaacacttttgcttccacttgaaatattgaaccaacaacactttcattgtgctcatcaaatgatgaggaat |
133 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| | | ||||||||||||||||| | || ||||||||| ||| || ||||||| |||| ||||| | |
|
|
| T |
17125659 |
cattggattcgaatcaacatatattttcctaagattcttgcttccacttgaaatggtaaatcaacaacacaatcaatgctctcatcacatgacgaggagt |
17125560 |
T |
|
| Q |
134 |
catcttcgctgcagaggtctggtttggtcagaatcacatgtgactctgtttttattctcttgttttgttcttctaaaacttccaaacgttttttaagctc |
233 |
Q |
| |
|
|| | | |||||||| |||||||||||| || | |||||||| ||||| || ||| ||||||||||| |||| | |||||| ||||||||||| |
|
|
| T |
17125559 |
tgtcattgttgcagaggcctggtttggtcaagattatcggtgactctatttttgttttctcattttgttcttccaaaattatcaaacgctttttaagctc |
17125460 |
T |
|
| Q |
234 |
tttcatgtatttgatagtgtcaaccaatacagaaaatttgtccatctaacagatttttacacaatcgattagtgagtagtgt |
315 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17125459 |
tttcaaatatttgatagtgtcaactaatacagaatatttgtccacctaacagatttttacacaatcgatcagtgagtagtgt |
17125378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 3 - 315
Target Start/End: Complemental strand, 17116250 - 17115937
Alignment:
| Q |
3 |
aattttcactaaaagccccttgtattctttacattggatccgaataaacatatatttccctaacacttttgcttccacttgaaatattgaaccaacaaca |
102 |
Q |
| |
|
|||||| |||| ||||||||||| |||| |||||||||| ||| ||||||||||| ||||| | | ||||||||||||||||| | || |||||||| |
|
|
| T |
17116250 |
aattttaactagaagccccttgtgctcttggcattggatcc-aatcaacatatattttcctaagattcttgcttccacttgaaatggtaaatcaacaaca |
17116152 |
T |
|
| Q |
103 |
ctttcattgtgctcatcaaatgatgaggaatcatcttcgctgcagaggtctggtttggtca-ga--atcacatgtgactctgtttttattctcttgtttt |
199 |
Q |
| |
|
| ||| | ||||||| |||| ||||| | || ||| |||| ||| || ||||||||| || | ||| ||||||| ||||| || ||| |||| |
|
|
| T |
17116151 |
caatcaatactctcatcacatgaggaggagttgtcatcgttgcaaagg-cttgtttggtcaagaccaccaccaatgactctatttttgttttctcatttt |
17116053 |
T |
|
| Q |
200 |
gttcttctaaaacttccaaacgttttttaagctctttcatgtatttgatagtgtcaaccaatacagaaaatttgtccatctaacagatttttacacaatc |
299 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||| |||||| |||||||||||||| |
|
|
| T |
17116052 |
gttcttccaaaactttcaaacgttttttaagctctttcaaatatttgatagtgtcaactaatacagaatacttgtccacctaacaaatttttacacaatc |
17115953 |
T |
|
| Q |
300 |
gattagtgagtagtgt |
315 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
17115952 |
aatcagtgagtagtgt |
17115937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 319
Target Start/End: Original strand, 25063023 - 25063327
Alignment:
| Q |
3 |
aattttcactaaaagccccttgtattctttacattggatccgaataaacatatatttccctaacacttttgcttccacttgaaatattgaaccaacaaca |
102 |
Q |
| |
|
|||||| |||| ||||||||||| || | ||||||||||||||| ||||| | ||| ||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
25063023 |
aattttaactagaagccccttgtgctcctgacattggatccgaattaacatttgttttcctaacactcttgcttccacttgaaatggtgaaccaacaaca |
25063122 |
T |
|
| Q |
103 |
ctttcattgtgctcatcaaatgatgaggaatcatcttcgctgcagaggtctggtttggtcagaatcacatgtgactctgtttttattctcttgttttgtt |
202 |
Q |
| |
|
| |||| | |||||| ||||||| ||||| || |||||||| ||| |||||||||| || ||||| | ||| || |||||||||||| |
|
|
| T |
25063123 |
cattcaacgctatcatcacatgatgaagaatcttcatcgctgcataggcatggtttggtc-ga--------tgact---tattttttttcttgttttgtt |
25063210 |
T |
|
| Q |
203 |
cttctaaaacttccaaacgttttttaagctctttcatgtatttgatagtgtcaaccaatacagaaaatttgtccatctaacagatttttacacaatcgat |
302 |
Q |
| |
|
|||| | |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||||||| | | || |
|
|
| T |
25063211 |
cttccacaacttccaaacgatttttaagctctttcatgtatttgatagtgtcaactaatacagagagcttgtccatctagcagatttttacagagttgaa |
25063310 |
T |
|
| Q |
303 |
tagtgagtagtgtaaca |
319 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
25063311 |
tagtgagtagtttaaca |
25063327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 281
Target Start/End: Original strand, 25112580 - 25112818
Alignment:
| Q |
34 |
cattggatccgaataaacatatatttccctaacacttttgcttccacttgaaatattgaaccaacaacactttcattgtgctcatcaaatgatgaggaat |
133 |
Q |
| |
|
|||||||||||||| | || | ||| ||||||||| ||||||||||||||||| |||||||||||||| |||| ||| || ||| ||||||| |||| |
|
|
| T |
25112580 |
cattggatccgaatcagcacttgttttcctaacactcttgcttccacttgaaatggtgaaccaacaacacattcaatgttatcctcacatgatgacgaat |
25112679 |
T |
|
| Q |
134 |
catcttcgctgcagaggtctggtttggtcagaatcacatgtgactctgtttttattctcttgttttgttcttctaaaacttccaaacgttttttaagctc |
233 |
Q |
| |
|
| || |||||||| ||| |||||||||| || ||| | | ||||| || |||||||||||||||| | | |||||||||| ||||||||||| |
|
|
| T |
25112680 |
cttcatcgctgcataggcatggtttggtc-ga--------tgattttttttttgttttcttgttttgttcttccacatcttccaaacgatttttaagctc |
25112770 |
T |
|
| Q |
234 |
tttcatgtatttgatagtgtcaaccaatacagaaaatttgtccatcta |
281 |
Q |
| |
|
||||||||||||||||||||||| | |||||| | ||| |||||||| |
|
|
| T |
25112771 |
tttcatgtatttgatagtgtcaattagtacagatagtttatccatcta |
25112818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 193 - 305
Target Start/End: Complemental strand, 25240678 - 25240566
Alignment:
| Q |
193 |
ttgttttgttcttctaaaacttccaaacgttttttaagctctttcatgtatttgatagtgtcaaccaatacagaaaatttgtccatctaacagattttta |
292 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| | || ||| | || |||||||| ||||||||| |
|
|
| T |
25240678 |
ttgttttgttcttccacaacttccaaacgatttttaagctctttcatgtatttgatagtgtcaaatagtatagatagcttatccatctagaagattttta |
25240579 |
T |
|
| Q |
293 |
cacaatcgattag |
305 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
25240578 |
cataatcgattag |
25240566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 28705715 - 28705658
Alignment:
| Q |
109 |
ttgtgctcatcaaatgatgaggaatcatcttcgctgcagaggtctggtttggtcagaa |
166 |
Q |
| |
|
|||| |||||||||||| |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
28705715 |
ttgtactcatcaaatgacgaggaatcctcatcgctgcagaggtctggtttggtcagaa |
28705658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 193 - 290
Target Start/End: Complemental strand, 28717512 - 28717416
Alignment:
| Q |
193 |
ttgttttgttcttctaaaacttccaaacgttttttaagctctttcatgtatttgatagtgtcaaccaatacagaaaatttgtccatctaacagatttt |
290 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | ||| |||||||||||||||||| ||||||| | |||| |||| || || |||||||| ||||| |
|
|
| T |
28717512 |
ttgttttgttcttctaaaacttctaaacgttctc-aagttctttcatgtatttgataatgtcaactactacataaaacttatctatctaacatatttt |
28717416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 25240829 - 25240754
Alignment:
| Q |
33 |
acattggatccgaataaacatatatttccctaacacttttgcttccacttgaaatattgaaccaacaacactttca |
108 |
Q |
| |
|
|||||| || ||||| ||||| | ||| ||||||||| ||||||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
25240829 |
acattgaattcgaatcaacatttgttttcctaacactcttgcttccacttgaaatgttgaaccaataacacattca |
25240754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 28717587 - 28717535
Alignment:
| Q |
114 |
ctcatcaaatgatgaggaatcatcttcgctgcagaggtctggtttggtcagaa |
166 |
Q |
| |
|
|||||||||||| ||| |||| || ||||| |||||||||||||||||||||| |
|
|
| T |
28717587 |
ctcatcaaatgacgagaaatcgtcatcgctacagaggtctggtttggtcagaa |
28717535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 28705450 - 28705526
Alignment:
| Q |
227 |
taagctctttcatgtatttgatagtgtcaaccaatacagaaaa----tttgtccatctaacagatttttacacaatc |
299 |
Q |
| |
|
|||||| | |||||||||||||||||||||| ||||||||||| ||| || | |||||| |||||||||||||| |
|
|
| T |
28705450 |
taagctttatcatgtatttgatagtgtcaactaatacagaaaacctatttatctagctaacatatttttacacaatc |
28705526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 28717350 - 28717392
Alignment:
| Q |
227 |
taagctctttcatgtatttgatagtgtcaaccaatacagaaaa |
269 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | ||||||||| |
|
|
| T |
28717350 |
taagctctatcatgtatttgatagtgtcaactagtacagaaaa |
28717392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 28717672 - 28717618
Alignment:
| Q |
34 |
cattggatccgaataaacatatatttccctaacacttttgcttccacttgaaata |
88 |
Q |
| |
|
|||||||||| ||| |||||| ||||||||||||| |||||||||| ||||||| |
|
|
| T |
28717672 |
cattggatccaaatcaacatagctttccctaacactcttgcttccacatgaaata |
28717618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 24333615 - 24333558
Alignment:
| Q |
109 |
ttgtgctcatcaaatgatgaggaatcatcttcgctgcagaggtctggtttggtcagaa |
166 |
Q |
| |
|
|||| |||||||||||| |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
24333615 |
ttgtactcatcaaatgacgaggaatcctcatcgctgcagaggtctggtttggtcagaa |
24333558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 24333350 - 24333426
Alignment:
| Q |
227 |
taagctctttcatgtatttgatagtgtcaaccaatacagaaaa----tttgtccatctaacagatttttacacaatc |
299 |
Q |
| |
|
|||||| | |||||||||||||||||||||| ||||||||||| ||| || | |||||| |||||||||||||| |
|
|
| T |
24333350 |
taagctttatcatgtatttgatagtgtcaactaatacagaaaacctatttatctagctaacatatttttacacaatc |
24333426 |
T |
|
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Target: scaffold0246 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 4740 - 4787
Alignment:
| Q |
191 |
tcttgttttgttcttctaaaacttccaaacgttttttaagctctttca |
238 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | |||||||||||||| |
|
|
| T |
4740 |
tcttgttttgttcttccaaaacttccaaacgctctttaagctctttca |
4787 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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