View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6571_low_2 (Length: 600)
Name: NF6571_low_2
Description: NF6571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6571_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 20 - 597
Target Start/End: Complemental strand, 4092161 - 4091589
Alignment:
| Q |
20 |
catatatacaatttatcactttatttatctttcttcctctttttcttttagttctctggttgagaaggatnnnnnnngaagctgttattgttggaatcaa |
119 |
Q |
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| T |
4092161 |
catacatacaatttatcactttatttatctttcttcctctttttcttttagttctctggttgagaaggataaaaaaagaagctgttattgttggaatcaa |
4092062 |
T |
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| Q |
120 |
gatcaagttgaatacatgtcatgatatgcaaaatcttcaaaccctttttgatgaggatgaacttcagcctagtcatgatggctacgaaccctagcctagt |
219 |
Q |
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| T |
4092061 |
gatcaagttgaatacatgtcatgatatgcaaaatcttcaaaccctttttgatgaggatgaacttcagcctagtcatgatggctacgaaccctagcctagt |
4091962 |
T |
|
| Q |
220 |
ggataatgcttggggnnnnnnnntactacttgtgtatttggatgctagcatttgttattacatgcaagtttgagactagggttaatattttatttaggat |
319 |
Q |
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| T |
4091961 |
ggataatgcttggggaaaaaaa-tactacttgtgtatttggatgctagcatttgttattacatgcaagtttgagactagggttaatattttatttaggat |
4091863 |
T |
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| Q |
320 |
attttctaaattaaaacaaatattaatctttannnnnnnnaataataattaatgagattagcaaaatcaattttaaaagaaaattttgatgtaagtcaaa |
419 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4091862 |
attttctaaattaaaacaaatattaatctttattttttttaataataat----gagattagcaaaatcaattttaaaagaaaattttgatgcaagtcaaa |
4091767 |
T |
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| Q |
420 |
tattaaaataattattactgttgatgatattgttcatatttgttaaatggagcagatttcatatgggaagacaacctcttataatcatagcagatgcaga |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4091766 |
tattaaaataattattactgttgatgatattgttcatatttgttaaatggagcagatttcatatgggaagacaacctcttataatcatagcagatgcaga |
4091667 |
T |
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| Q |
520 |
gctttgtaaagaagtgggaatnnnnnnnttcaaagacattccaaacagaagcattccttctcctatctctgctcctcc |
597 |
Q |
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| T |
4091666 |
gctttgtaaagaagtgggaattaaaaaattcaaagaaattccaaacagaagcattccttctcctatctctgcttctcc |
4091589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 471 - 585
Target Start/End: Original strand, 48182321 - 48182435
Alignment:
| Q |
471 |
gcagatttcatatgggaagacaacctcttataatcatagcagatgcagagctttgtaaagaagtgggaatnnnnnnnttcaaagacattccaaacagaag |
570 |
Q |
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|||||||||||||||||||||| || || ||||| ||||||||||||| || |||||||| || ||||| || |||||||||||||||||||| |
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| T |
48182321 |
gcagatttcatatgggaagacagccactaataatagtagcagatgcagaactgtgtaaagaggttggaatcaaaaaatttaaagacattccaaacagaag |
48182420 |
T |
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| Q |
571 |
cattccttctcctat |
585 |
Q |
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| T |
48182421 |
cactccctctcctat |
48182435 |
T |
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