View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6571_low_20 (Length: 245)

Name: NF6571_low_20
Description: NF6571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6571_low_20
NF6571_low_20
[»] chr4 (24 HSPs)
chr4 (1-234)||(37384152-37384384)
chr4 (82-217)||(21714039-21714175)
chr4 (82-220)||(33516136-33516276)
chr4 (23-220)||(42907779-42907976)
chr4 (25-169)||(4741223-4741366)
chr4 (82-169)||(9280953-9281040)
chr4 (81-180)||(25298896-25298994)
chr4 (94-183)||(8843880-8843969)
chr4 (94-183)||(8856844-8856933)
chr4 (25-188)||(12075638-12075801)
chr4 (100-154)||(36306744-36306798)
chr4 (25-183)||(36919053-36919211)
chr4 (102-176)||(50376435-50376509)
chr4 (82-115)||(21423859-21423892)
chr4 (82-174)||(21956878-21956969)
chr4 (82-125)||(15987326-15987369)
chr4 (90-189)||(37926483-37926582)
chr4 (100-189)||(7334267-7334354)
chr4 (117-183)||(25265246-25265311)
chr4 (65-186)||(16575039-16575160)
chr4 (90-179)||(55783438-55783527)
chr4 (90-179)||(55847620-55847709)
chr4 (23-115)||(32585487-32585579)
chr4 (139-183)||(39086086-39086130)
[»] chr1 (13 HSPs)
chr1 (28-183)||(39219183-39219338)
chr1 (37-174)||(48125701-48125838)
chr1 (65-148)||(13798198-13798281)
chr1 (84-220)||(42729009-42729146)
chr1 (91-182)||(8880374-8880465)
chr1 (90-176)||(33293591-33293677)
chr1 (127-184)||(47644967-47645024)
chr1 (139-183)||(16903440-16903484)
chr1 (95-183)||(36421691-36421779)
chr1 (128-183)||(13692569-13692624)
chr1 (127-183)||(5293518-5293574)
chr1 (65-220)||(41476998-41477154)
chr1 (139-179)||(43513149-43513189)
[»] chr8 (16 HSPs)
chr8 (82-188)||(29918526-29918632)
chr8 (65-148)||(14155491-14155574)
chr8 (83-220)||(36274929-36275066)
chr8 (28-220)||(8545358-8545551)
chr8 (90-183)||(9476084-9476177)
chr8 (94-183)||(5793509-5793598)
chr8 (127-183)||(17108300-17108356)
chr8 (65-220)||(28345377-28345533)
chr8 (91-220)||(6388577-6388707)
chr8 (82-183)||(30903970-30904071)
chr8 (28-154)||(9642360-9642487)
chr8 (23-125)||(24870028-24870130)
chr8 (35-125)||(29108838-29108928)
chr8 (82-154)||(27056618-27056691)
chr8 (128-168)||(11880867-11880907)
chr8 (128-168)||(11898283-11898323)
[»] chr2 (15 HSPs)
chr2 (65-183)||(13531874-13531992)
chr2 (35-183)||(25210302-25210450)
chr2 (37-203)||(30696828-30696995)
chr2 (89-183)||(34544381-34544475)
chr2 (82-183)||(29656798-29656899)
chr2 (92-219)||(13954633-13954761)
chr2 (92-219)||(14095840-14095968)
chr2 (90-183)||(17845462-17845556)
chr2 (82-219)||(35248448-35248582)
chr2 (100-168)||(37309812-37309880)
chr2 (65-122)||(30978913-30978970)
chr2 (25-106)||(43371555-43371636)
chr2 (23-115)||(13705365-13705457)
chr2 (137-220)||(31600886-31600970)
chr2 (132-168)||(33174333-33174369)
[»] chr5 (16 HSPs)
chr5 (70-182)||(7350459-7350571)
chr5 (25-183)||(17153093-17153251)
chr5 (86-220)||(40187724-40187859)
chr5 (82-179)||(16311357-16311453)
chr5 (82-220)||(38972808-38972947)
chr5 (127-183)||(35584041-35584096)
chr5 (28-183)||(6810082-6810237)
chr5 (94-183)||(12457441-12457530)
chr5 (94-174)||(29664904-29664984)
chr5 (59-154)||(39887142-39887237)
chr5 (83-125)||(5908753-5908795)
chr5 (117-183)||(24207611-24207677)
chr5 (80-125)||(4920808-4920853)
chr5 (82-123)||(12447365-12447406)
chr5 (90-183)||(27900473-27900566)
chr5 (82-154)||(18451949-18452021)
[»] chr6 (10 HSPs)
chr6 (80-240)||(10925504-10925665)
chr6 (90-220)||(9402475-9402606)
chr6 (88-220)||(1947860-1947993)
chr6 (25-171)||(256498-256645)
chr6 (90-174)||(13769005-13769089)
chr6 (80-178)||(32959790-32959887)
chr6 (139-186)||(34179129-34179176)
chr6 (140-174)||(32054392-32054426)
chr6 (117-181)||(14321793-14321857)
chr6 (23-115)||(32053080-32053172)
[»] chr3 (8 HSPs)
chr3 (65-148)||(42243346-42243429)
chr3 (107-183)||(772882-772957)
chr3 (100-180)||(37032179-37032259)
chr3 (127-232)||(27252441-27252547)
chr3 (82-180)||(30904878-30904976)
chr3 (82-115)||(7469841-7469874)
chr3 (80-125)||(17146211-17146256)
chr3 (82-123)||(44252731-44252772)
[»] chr7 (6 HSPs)
chr7 (65-183)||(3773998-3774116)
chr7 (90-169)||(3157026-3157105)
chr7 (94-181)||(11472788-11472874)
chr7 (94-180)||(43550491-43550577)
chr7 (82-174)||(29292640-29292732)
chr7 (100-183)||(37217933-37218015)
[»] scaffold1322 (1 HSPs)
scaffold1322 (100-181)||(1037-1118)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 37384384 - 37384152
Alignment:
Q  1 tcttattttgacttagtggatatatgagttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacac 100  Q
    |||| ||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37384384 tcttgtttagacttagtggatatatgagttttctccaattttaaaacacgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacac 37384285  T
Q  101 aaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacacggttaagtttcggtctt 200  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||    
T  37384284 aaacccgtcccaaatatag-aaatcaatttattatcccttttatataaatagaagttcaaaccctaaatcatttcactcacacggttaagtttcggtctt 37384186  T
Q  201 tcaaataacactcacttatctaatttctctctct 234  Q
    ||||||||||| ||||||||||||||||||||||    
T  37384185 tcaaataacacccacttatctaatttctctctct 37384152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 21714039 - 21714175
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcac 181  Q
    |||||| |||| |||||  |||| |||| ||||| ||||||||| |||||||| | ||||||||||||||||| |||||||||||||| |||| ||| ||    
T  21714039 ccaccctaaactcatacctaaactcgtctcaaatgtagaaaattaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcacttac 21714138  T
Q  182 acggtta-agtttcggtctttcaaataacactcactt 217  Q
    ||  ||| ||| || |||| |||||| ||||||||||    
T  21714139 acaattagagtctcagtctctcaaatgacactcactt 21714175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 220
Target Start/End: Original strand, 33516136 - 33516276
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcac 181  Q
    ||||||| |||| |||| |||||||||| ||||| || |||||  || ||||| |||||||||||||||| || |||||||||||||| |||| ||||||    
T  33516136 ccaccccgaacctatacccaaacccgtctcaaatgtaaaaaatcaatgtattaccccttttatataaataaaaactcaaaccctaaatcatttcactcac 33516235  T
Q  182 a-cggtta-agtttcggtctttcaaataacactcacttatc 220  Q
    | | |||| ||| | ||||||||| || |||||||||||||    
T  33516236 acccgttagagtcttggtctttcagatgacactcacttatc 33516276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 42907976 - 42907779
Alignment:
Q  23 tatgagttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaa 122  Q
    |||||||||||||||| || |||||| || |||| |||  | || | |||||||   | ||||||| | ||||||| ||||| |||||| ||| ||||||    
T  42907976 tatgagttttctccgaattcaaaacacggatacgggacgagtaatggggatataggtacccaccccgagcccatacccaaactcgtcccgaatgtagaaa 42907877  T
Q  123 attgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacacggtta-agtttcggtctttcaaataacactcacttatc 220  Q
    ||  ||||| || | ||||||||||||||||| |||||||||||||| |||| ||||| || |||| ||| |  |||||||| || |||| ||||||||    
T  42907876 atcaatttacta-ctcttttatataaatagaaactcaaaccctaaatcatttcactcatacagttagagtcttagtctttcagatgacacacacttatc 42907779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 4741223 - 4741366
Alignment:
Q  25 tgagttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaat 124  Q
    |||||||||  ||||||||||||||||||| | |||    |||  |||||||   | ||||||| |||||||||| |||||||| || ||| || ||| |    
T  4741223 tgagttttcctcgattttaaaacatgggtatgggacggataacagggatataagtacccaccccgaacccatacaaaaacccgttccgaatgtataaa-t 4741321  T
Q  125 tgatttattatcccttttatataaatagaagctcaaaccctaaat 169  Q
      ||||||||||| |||||||||||||||| ||||||||||||||    
T  4741322 caatttattatccattttatataaatagaaactcaaaccctaaat 4741366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 9280953 - 9281040
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaat 169  Q
    ||||||| ||| ||||| |||||  ||||  ||||||||||||  ||||||||||||||||||||| ||||||  |||||||||||||    
T  9280953 ccaccccgaactcatactcaaacttgtcctgaatatagaaaataaatttattatcccttttatatagatagaaattcaaaccctaaat 9281040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 180
Target Start/End: Original strand, 25298896 - 25298994
Alignment:
Q  81 tccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactca 180  Q
    |||||||| ||||||||| ||||||||| |||||| | ||||||  |||||| | ||||||| ||||||||||| ||||||| |||||| |||| |||||    
T  25298896 tccaccccgaacccatacccaaacccgtaccaaatgttgaaaatcaatttatcaccccttttttataaatagaa-ctcaaactctaaatcatttcactca 25298994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 8843880 - 8843969
Alignment:
Q  94 catacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||| ||||||||||   ||| ||||||||| |||||||| |||||| |||||||||||| || ||| ||||||| |||| ||||||||    
T  8843880 catacccaaacccgtcgtgaatgtagaaaattaatttattacccctttcatataaatagaaacttaaatcctaaatcatttcactcacac 8843969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 8856844 - 8856933
Alignment:
Q  94 catacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||| ||||||||||   ||| ||||||||| |||||||| |||||| |||||||||||| || ||| ||||||| |||| ||||||||    
T  8856844 catacccaaacccgtcgtgaatgtagaaaattaatttattacccctttcatataaatagaaacttaaatcctaaatcatttcactcacac 8856933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 12075638 - 12075801
Alignment:
Q  25 tgagttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaat 124  Q
    |||||||| ||| |||| |||||| |||||||||||| | ||   ||| ||||  | ||||||||||| | ||| ||||| |||||  ||| ||||||||    
T  12075638 tgagttttttccaatttcaaaacacgggtacgtgacaggtaatagggagatatgtacccaccccaaactcgtactcaaactcgtccggaatgtagaaaat 12075737  T
Q  125 tgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacacggtta 188  Q
      |||||||| || |||||||||||||||| || |||| || ||| |||| || ||||| ||||    
T  12075738 caatttattacccattttatataaatagaaactaaaactctgaatcatttcacccacacagtta 12075801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 36306798 - 36306744
Alignment:
Q  100 caaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaa 154  Q
    |||||||||||| ||| ||||||||  |||||||| |||||||||||||||||||    
T  36306798 caaacccgtcccgaatgtagaaaatcaatttattaccccttttatataaatagaa 36306744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 183
Target Start/End: Complemental strand, 36919211 - 36919053
Alignment:
Q  25 tgagttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaat 124  Q
    ||||||||| |||| ||||||||||| |||   |||  | |||| |||||||   ||||| ||  ||||||||| ||||| ||| ||  || ||||||||    
T  36919211 tgagttttccccgactttaaaacatgtgtataggacgagtaacgtggatataggtatccatccttaacccatacccaaactcgttccggatgtagaaaat 36919112  T
Q  125 tgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
       ||||||| | ||||||||||||||||| ||||||| |||||| |||| ||||||||    
T  36919111 cagtttattaccacttttatataaatagaaactcaaactctaaatcatttcactcacac 36919053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 50376435 - 50376509
Alignment:
Q  102 aacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattatttta 176  Q
    ||||||| || ||| ||||||||  ||||||| ||| |||||||||||||||| || |||| |||||||||||||    
T  50376435 aacccgttccgaatgtagaaaatcaatttattttccattttatataaatagaaactaaaacgctaaattatttta 50376509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 21423892 - 21423859
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaat 115  Q
    ||||||||||||||||||||||||||||||||||    
T  21423892 ccaccccaaacccatacacaaacccgtcccaaat 21423859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 174
Target Start/End: Original strand, 21956878 - 21956969
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattt 174  Q
    ||||||| ||||||||| ||||| |||  | ||| ||||||||  |||||||| |||||||||||||||| || | |||||||||||| ||||    
T  21956878 ccaccccgaacccatacccaaactcgttacgaatgtagaaaatcaatttatta-cccttttatataaataaaaacccaaaccctaaatcattt 21956969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 15987326 - 15987369
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaatt 125  Q
    ||||||| ||||||||| ||||||||||||||||||| ||||||    
T  15987326 ccaccccgaacccatacccaaacccgtcccaaatataaaaaatt 15987369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 37926582 - 37926483
Alignment:
Q  90 aacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacacggttaa 189  Q
    ||||||||| ||||| | |||  ||| ||| ||||| ||||||||||||||| |||| ||| ||| |||||||  ||||| |||| |||||||| |||||    
T  37926582 aacccatacccaaactcatcctgaatgtagtaaattaatttattatccctttcatatcaattgaaactcaaactttaaatcatttaactcacacagttaa 37926483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 7334267 - 7334354
Alignment:
Q  100 caaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacacggttaa 189  Q
    ||||| |||||||||| | ||||||  ||||||||||  |||||||  ||||||| ||||||| |||||| |||| |||||||| |||||    
T  7334267 caaactcgtcccaaatgttgaaaatcaatttattatcgtttttata--aatagaaactcaaactctaaatcatttcactcacacagttaa 7334354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 25265246 - 25265311
Alignment:
Q  117 tagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||||||  ||||||||||| || ||||||||||||| ||||||  |||||| |||||||||||||    
T  25265246 tagaaaatcaatttattatcc-ttctatataaatagaaactcaaattctaaatcattttactcacac 25265311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 16575160 - 16575039
Alignment:
Q  65 aacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccc 164  Q
    ||||||||||||   | |||| || |||| |||| ||||| ||||  |||| || |||||| |||||||| || ||| |||||||||||| |||||| |     
T  16575160 aacgaggatataagtacccactccgaacctatacccaaactcgtcttaaatgtaaaaaattaatttattacccttttaatataaatagaaactcaaatca 16575061  T
Q  165 taaattattttactcacacggt 186  Q
    ||||| |||| |||| ||||||    
T  16575060 taaatcatttcactcgcacggt 16575039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 55783527 - 55783438
Alignment:
Q  90 aacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactc 179  Q
    |||||||||  ||||  ||||||||||||||||||   || |||| | ||||||||| ||||||| |||||| ||||||| |||| ||||    
T  55783527 aacccatacttaaacttgtcccaaatatagaaaatcacttcattacctcttttatatgaatagaaactcaaatcctaaatcatttcactc 55783438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 55847709 - 55847620
Alignment:
Q  90 aacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactc 179  Q
    |||||||||  ||||  ||||||||||||||||||   || |||| | ||||||||| ||||||| |||||| ||||||| |||| ||||    
T  55847709 aacccatacttaaacttgtcccaaatatagaaaatcacttcattacctcttttatatgaatagaaactcaaatcctaaatcatttcactc 55847620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 32585579 - 32585487
Alignment:
Q  23 tatgagttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaat 115  Q
    ||||| ||||||||||||| |||||| ||||| | |||| | |||| | |||||   | ||||||  ||||||||| ||||||||||||||||    
T  32585579 tatgaattttctccgatttcaaaacacgggtatgggacaggtaacgggtatataggtacccaccctgaacccatacccaaacccgtcccaaat 32585487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 39086130 - 39086086
Alignment:
Q  139 ttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    |||||||||||||||| || ||||||||||| |||| ||||||||    
T  39086130 ttttatataaatagaaacttaaaccctaaatcatttcactcacac 39086086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 39219338 - 39219183
Alignment:
Q  28 gttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattga 127  Q
    |||||| |||||||||||||| |||||||  ||| | |||| ||||| ||  | ||||||| ||||||||| ||||| ||| | |||| ||||||||| |    
T  39219338 gttttccccgattttaaaacacgggtacggaacaagtaacggggatacatgtacccaccccgaacccatacccaaactcgttctaaatgtagaaaattaa 39219239  T
Q  128 tttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||||| | ||||||||||||||||| |||||||||||||| ||||  |||||||    
T  39219238 tttattacctcttttatataaatagaaactcaaaccctaaatcatttcgctcacac 39219183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 48125701 - 48125838
Alignment:
Q  37 gattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatc 136  Q
    |||||||||||| ||||||| |||  | ||||||||||||   ||||||||| ||||||||| ||||| |||| | ||| ||||||||  ||||| || |    
T  48125701 gattttaaaacacgggtacgggacgggtaacgaggatataggtatccaccccgaacccatacccaaactcgtcgcgaatgtagaaaatcaatttactacc 48125800  T
Q  137 ccttttatataaatagaagctcaaaccctaaattattt 174  Q
     ||||||||||||||||| ||||||| |||||||||||    
T  48125801 gcttttatataaatagaaactcaaactctaaattattt 48125838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 13798281 - 13798198
Alignment:
Q  65 aacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataa 148  Q
    |||||||||||||| ||||||||||||  |||||  |||||| ||| |||| ||||||||  |||||||| |||||||||||||    
T  13798281 aacgaggatatatttatccaccccaaattcatacctaaacccatcctaaatgtagaaaatcaatttattaccccttttatataa 13798198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 42729009 - 42729146
Alignment:
Q  84 accccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||| ||| ||||| ||||| ||| |  ||| ||||||||  |||||| ||||||||||||||||||||| || | || |||||| |||| ||||||||    
T  42729009 accccgaactcatacccaaacacgttctgaatgtagaaaataaatttatcatcccttttatataaatagaaacttatacactaaatcatttcactcacac 42729108  T
Q  184 ggtta-agtttcggtctttcaaataacactcacttatc 220  Q
     || | ||| || |||||||| ||||||| ||||||||    
T  42729109 agtcagagtctcagtctttcagataacacccacttatc 42729146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 8880465 - 8880374
Alignment:
Q  91 acccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcaca 182  Q
    |||||||| ||||||||||||||||    |||||  |||||||| ||||||| ||||||||||| |||||||  ||||| |||| |||||||    
T  8880465 acccatacccaaacccgtcccaaatgctaaaaataaatttattaccccttttttataaatagaaactcaaactttaaatcatttcactcaca 8880374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 33293591 - 33293677
Alignment:
Q  90 aacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattatttta 176  Q
    ||||||||| ||||| ||| || ||| ||||||||  ||||| || || |||||||| ||||||| |||||||||||||| ||||||    
T  33293591 aacccatacccaaactcgttccgaatgtagaaaatcaatttagtacccattttatatcaatagaaactcaaaccctaaatcatttta 33293677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 47644967 - 47645024
Alignment:
Q  127 atttattatcccttttatataaatagaagctcaaaccctaaattattttactcacacg 184  Q
    |||||||||||||||||||||||||||| |||| | ||||||| |||| |||| ||||    
T  47644967 atttattatcccttttatataaatagaaactcagatcctaaatcatttcactcccacg 47645024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 16903484 - 16903440
Alignment:
Q  139 ttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||||||||||| || ||||||||||||||||||| ||||||||    
T  16903484 ttttatataaatataaactcaaaccctaaattatttcactcacac 16903440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 36421779 - 36421691
Alignment:
Q  95 atacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    |||| ||||| |||| | ||||||||||||  ||||||||||||| ||||||||||| || ||| ||| |||||| |||| | ||||||    
T  36421779 atacccaaactcgtctcgaatatagaaaatcaatttattatccctcttatataaataaaaactcgaactctaaatcatttcattcacac 36421691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 13692624 - 13692569
Alignment:
Q  128 tttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||||||||||||||||||||||||| |  ||||||||||| |||| || |||||    
T  13692624 tttattatcccttttatataaatagaaaccaaaaccctaaatcatttcacccacac 13692569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 5293518 - 5293574
Alignment:
Q  127 atttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    |||||||||| ||||||||||||||||| ||||||| | ||| ||||| | ||||||    
T  5293518 atttattatcacttttatataaatagaaactcaaactcaaaactatttcaatcacac 5293574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 41476998 - 41477154
Alignment:
Q  65 aacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccc 164  Q
    |||| ||||||||  | ||||||| || |||||| |||||||||||| ||   |||||||  |||| ||| || ||||||||||| ||||    ||||||    
T  41476998 aacgtggatatatgtacccaccccgaatccatacccaaacccgtcccgaaagcagaaaatcaatttgttaccctttttatataaagagaaatggaaaccc 41477097  T
Q  165 taaattattttactcacacggt-taagtttcggtctttcaaataacactcacttatc 220  Q
    |||||||||| | |||||| ||  |||| || |||||||| || |||| ||||||||    
T  41477098 taaattatttcattcacacagtcaaagtctccgtctttcagatgacacccacttatc 41477154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 43513149 - 43513189
Alignment:
Q  139 ttttatataaatagaagctcaaaccctaaattattttactc 179  Q
    |||||||||||||||| |||||||||||||| |||| ||||    
T  43513149 ttttatataaatagaaactcaaaccctaaataatttcactc 43513189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 29918632 - 29918526
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcac 181  Q
    ||||||| || ||||||||||||||||||||||| || |||||  |||||||| | ||||||||||||||||| |||||||||||||| |||| ||||||    
T  29918632 ccaccccgaaaccatacacaaacccgtcccaaatgtaaaaaatcaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcactcac 29918533  T
Q  182 acggtta 188  Q
    || ||||    
T  29918532 acagtta 29918526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 14155574 - 14155491
Alignment:
Q  65 aacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataa 148  Q
    |||||||||||||| ||||||||||||  ||||| ||||||| ||| |||| ||||||||  |||||||| |||||||||||||    
T  14155574 aacgaggatatatttatccaccccaaattcatacccaaacccatcctaaatgtagaaaatcaatttattaccccttttatataa 14155491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 220
Target Start/End: Complemental strand, 36275066 - 36274929
Alignment:
Q  83 caccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcaca 182  Q
    |||||| |||||||||  ||||  ||||| ||| || |||||  ||||| |||||||||||||||||||||| | | |||||||||| |||| |||||||    
T  36275066 caccccgaacccatacctaaacatgtcccgaatgtaaaaaatcaatttactatcccttttatataaatagaaac-ccaaccctaaatcatttcactcaca 36274968  T
Q  183 cggt-taagtttcggtctttcaaataacactcacttatc 220  Q
    | ||  |||| ||||||||||| || |||||||||||||    
T  36274967 cagtcaaagtctcggtctttcagatgacactcacttatc 36274929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 8545358 - 8545551
Alignment:
Q  28 gttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattga 127  Q
    |||||||||||||| |||||| ||||| |  ||  | |||| |||||||   | ||||||| ||||||||| ||||| |||||||||| ||||||||  |    
T  8545358 gttttctccgatttcaaaacacgggtatggaacgagtaacggggatatagatacccaccccgaacccatactcaaactcgtcccaaatgtagaaaatcaa 8545457  T
Q  128 tttattatcccttttatataaatagaagctcaaaccctaaattattttactcacacggtta-agtttcggtctttcaaataacactcacttatc 220  Q
    ||||  |  ||||||||||||| ||||   |||||||||||| |||| ||||| |  |  | ||| |||||||||||||| |||||||||||||    
T  8545458 tttacaactccttttatataaacagaaatccaaaccctaaatcatttcactcaaatagccagagtctcggtctttcaaatgacactcacttatc 8545551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 9476084 - 9476177
Alignment:
Q  90 aacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||||||| ||||||| |||| ||| ||||||||| | |||||| ||||| |||||||||||||  | |||| ||||||||||| ||||||||    
T  9476084 aacccatacccaaacccatcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcacac 9476177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 5793598 - 5793509
Alignment:
Q  94 catacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||| ||||| ||||| |||| || |||||  ||| ||||||  |||||||||||||||| |||||||||||||| |||| ||||||||    
T  5793598 catactcaaactcgtcctaaatgtaaaaaatcaattaattatcatttttatataaatagaaactcaaaccctaaatcatttcactcacac 5793509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 17108356 - 17108300
Alignment:
Q  127 atttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||||||||| |||||||||||||||| || ||||||||||| |||| ||||||||    
T  17108356 atttattatccattttatataaatagaaacttaaaccctaaataatttcactcacac 17108300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 220
Target Start/End: Complemental strand, 28345533 - 28345377
Alignment:
Q  65 aacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccc 164  Q
    ||||||||||||  || ||||||| ||||||||| |||||  ||||  ||| ||||||||  || ||||| ||||||||||||||||||| |  |||  |    
T  28345533 aacgaggatataggcacccaccccgaacccatacccaaacttgtcctgaatgtagaaaataaatatattaccccttttatataaatagaaaccgaaattc 28345434  T
Q  165 taaattattttactcacacggtta-agtttcggtctttcaaataacactcacttatc 220  Q
    ||||| |||| |||||||| || | ||| || || ||||| || |||||||||||||    
T  28345433 taaatcatttcactcacacagtcatagtctcagtatttcagatgacactcacttatc 28345377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 6388577 - 6388707
Alignment:
Q  91 acccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacacggtta-a 189  Q
    |||||| | ||||||| |||  ||| ||||||||  |||||||| || ||||||||||| |||| | |||||||||||| |||| ||||||||  ||| |    
T  6388577 acccatgctcaaacccatcctgaatgtagaaaatcaatttattacccattttatataaacagaaacccaaaccctaaatcatttcactcacacaattaga 6388676  T
Q  190 gtttcggtctttcaaataacactcacttatc 220  Q
    || || | |||| |||| |||||||||||||    
T  6388677 gtctcagactttaaaatgacactcacttatc 6388707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 30904071 - 30903970
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcac 181  Q
    |||||||| |||||||| |||| | ||||| ||| ||||||||  ||||||||  | |||||||||||||||| |  ||||| ||||| |||| ||||||    
T  30904071 ccaccccatacccatacccaaatcagtcccgaatgtagaaaatcaatttattacacattttatataaatagaaaccaaaaccttaaatcatttcactcac 30903972  T
Q  182 ac 183  Q
    ||    
T  30903971 ac 30903970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 9642360 - 9642487
Alignment:
Q  28 gttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattga 127  Q
    |||||| ||||||| |||||| ||||| | |||  | |||| || |||||  ||||| ||| ||||||||| || ||||||||||||| || ||||||      
T  9642360 gttttccccgatttcaaaacacgggtatgggacgggtaacggggttatatatatccatcccgaacccatactcatacccgtcccaaatgtaaaaaattat 9642459  T
Q  128 tttattatccc-ttttatataaatagaa 154  Q
    ||| ||| ||| ||||||||||||||||    
T  9642460 ttttttacccctttttatataaatagaa 9642487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 24870028 - 24870130
Alignment:
Q  23 tatgagttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaa 122  Q
    ||||||||||| |||||||||||||| ||||| |||||  | |||| | |||||   | ||||||| | |||||||  ||||||||||||||| || |||    
T  24870028 tatgagttttccccgattttaaaacacgggtatgtgacgggtaacgggtatataggtacccaccccgagcccatacctaaacccgtcccaaatgtaaaaa 24870127  T
Q  123 att 125  Q
    |||    
T  24870128 att 24870130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 29108838 - 29108928
Alignment:
Q  35 ccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaatt 125  Q
    |||||||||||||||||||| | |||  | |||| | ||||||  | ||||||| ||||||||| || ||||||||||||| || ||||||    
T  29108838 ccgattttaaaacatgggtatgggacgggtaacgggtatatatgtacccaccccgaacccatacccatacccgtcccaaatgtaaaaaatt 29108928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 27056618 - 27056691
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttatta-tcccttttatataaatagaa 154  Q
    ||||||| |||||||||||| || |||||||||| || ||||||  ||| |||  |||||||||||||||||||    
T  27056618 ccaccccgaacccatacacatactcgtcccaaatgtaaaaaattacttttttacccccttttatataaatagaa 27056691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 11880867 - 11880907
Alignment:
Q  128 tttattatcccttttatataaatagaagctcaaaccctaaa 168  Q
    ||||||| |||| |||||||||||||| |||||||||||||    
T  11880867 tttattacccctcttatataaatagaaactcaaaccctaaa 11880907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 11898283 - 11898323
Alignment:
Q  128 tttattatcccttttatataaatagaagctcaaaccctaaa 168  Q
    ||||||| |||| |||||||||||||| |||||||||||||    
T  11898283 tttattacccctcttatataaatagaaactcaaaccctaaa 11898323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 183
Target Start/End: Complemental strand, 13531992 - 13531874
Alignment:
Q  65 aacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccc 164  Q
    |||||||||||||  || |||||| |||||| || |||||||| |||| || ||||||||  ||||||||||| |||||||||||||||| |||||||||    
T  13531992 aacgaggatatatgtattcaccccgaacccacactcaaacccgccccacatgtagaaaatcaatttattatccattttatataaatagaaactcaaaccc 13531893  T
Q  165 taaattattttactcacac 183  Q
    ||||| |||| ||||||||    
T  13531892 taaatcatttcactcacac 13531874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 183
Target Start/End: Complemental strand, 25210450 - 25210302
Alignment:
Q  35 ccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttatta 134  Q
    |||| ||||||||| ||||| | |||  | |||||||||||||  | |||||||||||||||||  |||||| |||| ||| ||||||||  |||| |||    
T  25210450 ccgactttaaaacacgggtatgggacgggtaacgaggatatatgtacccaccccaaacccataccaaaacccctcccgaatgtagaaaatcaatttgtta 25210351  T
Q  135 tcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
     || |||||||||||||||| |||||||||||||| |||| ||||||||    
T  25210350 cccattttatataaatagaaactcaaaccctaaatcatttcactcacac 25210302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 203
Target Start/End: Complemental strand, 30696995 - 30696828
Alignment:
Q  37 gattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatc 136  Q
    ||||||||||||||| |||| |||  | |||   |||||||  | ||||||| ||| ||||| ||||||  |||||||| || |||||  |||||||| |    
T  30696995 gattttaaaacatggatacgagacgggtaacagagatatatgtacccaccccgaactcatacccaaacctatcccaaatgtaaaaaatcaatttattacc 30696896  T
Q  137 ccttttatataaatagaagctcaaaccctaaattattttactcacacggtta-agtttcggtctttca 203  Q
    | ||||||||||||||||  ||||||||||||| || | |||||||| |||| ||| |||||||||||    
T  30696895 cattttatataaatagaaattcaaaccctaaatcatgtcactcacacagttagagtctcggtctttca 30696828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 183
Target Start/End: Original strand, 34544381 - 34544475
Alignment:
Q  89 aaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    |||| ||||| ||||||| |||| ||| ||||||||  |||||||| || ||||||||||||| || |||||||||||||| |||| | ||||||    
T  34544381 aaactcatactcaaacccctcccgaatgtagaaaatctatttattacccattttatataaataaaaactcaaaccctaaataatttcattcacac 34544475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 29656798 - 29656899
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcac 181  Q
    ||||||| ||| |||||||||| | ||| ||||| || |||||  ||||||||||||||||||||||||| || |   |||||||||| |||| ||||||    
T  29656798 ccaccccgaactcatacacaaatctgtctcaaatgtataaaatcaatttattatcccttttatataaataaaaaccataaccctaaatcatttgactcac 29656897  T
Q  182 ac 183  Q
    ||    
T  29656898 ac 29656899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 13954761 - 13954633
Alignment:
Q  92 cccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacacggtta-ag 190  Q
    ||||||| |||||||||| | ||  ||||||||  | |||||| | ||||||||||||||||| ||| |||||||||| |||| |||||| |||| | ||    
T  13954761 cccatactcaaacccgtctcgaacgtagaaaatcaacttattaccacttttatataaatagaaactcgaaccctaaatcatttcactcactcggtgagag 13954662  T
Q  191 tttcggtctttcaaataacactcacttat 219  Q
    | || | |||||| || ||||||||||||    
T  13954661 tctcagactttcagatgacactcacttat 13954633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 14095968 - 14095840
Alignment:
Q  92 cccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacacggtta-ag 190  Q
    ||||||| |||||||||| | ||  ||||||||  | |||||| | ||||||||||||||||| ||| |||||||||| |||| |||||| |||| | ||    
T  14095968 cccatactcaaacccgtctcgaacgtagaaaatcaacttattaccacttttatataaatagaaactcgaaccctaaatcatttcactcactcggtgagag 14095869  T
Q  191 tttcggtctttcaaataacactcacttat 219  Q
    | || | |||||| || ||||||||||||    
T  14095868 tctcagactttcagatgacactcacttat 14095840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 17845462 - 17845556
Alignment:
Q  90 aacccatacacaaacccgtcccaaatatagaaaattga-tttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||||||| |||||||||| | ||| || |||| | | |||||||||| |||||||||||||||| ||| || ||||||| |||| ||||||||    
T  17845462 aacccatacccaaacccgtctcgaatgtaaaaaaatcaatttattatcctttttatataaatagaaactccaaacctaaatcatttcactcacac 17845556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 35248448 - 35248582
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcac 181  Q
    ||||||| ||||||||| |||||||||||  ||| |||||||   || ||| | |||||||||||||||||||  | ||||||||||| |||| ||||||    
T  35248448 ccaccccgaacccatacccaaacccgtcctgaatgtagaaaa---atatat-accccttttatataaatagaaaatgaaaccctaaatcatttcactcac 35248543  T
Q  182 acggtta-agtttcggtctttcaaataacactcacttat 219  Q
    || |  | ||| || ||||||||||| |||||| |||||    
T  35248544 acagacagagtctcagtctttcaaatgacactcgcttat 35248582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 37309812 - 37309880
Alignment:
Q  100 caaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaa 168  Q
    |||||||||||| ||  ||||||||  |||||| |||||||||| ||||||||||  ||||||||||||    
T  37309812 caaacccgtcccgaaggtagaaaatcaatttatcatcccttttacataaatagaaattcaaaccctaaa 37309880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 30978970 - 30978913
Alignment:
Q  65 aacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaa 122  Q
    |||||||||||||  ||||||||| ||||||||| |||||||  ||||||| ||||||    
T  30978970 aacgaggatatatgtatccaccccgaacccatacccaaaccctacccaaatgtagaaa 30978913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 43371636 - 43371555
Alignment:
Q  25 tgagttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaaccc 106  Q
    ||||||||| |||||||||||| | ||||||| |||  | |||| ||||||||  | ||||||||||| ||||| |||||||    
T  43371636 tgagttttccccgattttaaaatacgggtacgggacgggtaacggggatatatgtacccaccccaaactcatacccaaaccc 43371555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 13705365 - 13705457
Alignment:
Q  23 tatgagttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaat 115  Q
    ||||||||||| ||||||| |||||| ||||| | |||| | |||| | |||||   | ||||||| |||||||||  |||||||||||||||    
T  13705365 tatgagttttccccgatttcaaaacacgggtatgagacaggtaacgggtatataggtacccaccccgaacccatacctaaacccgtcccaaat 13705457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 31600886 - 31600970
Alignment:
Q  137 ccttttatataaatagaagctcaaaccctaaattattttactcacacggtta-agtttcggtctttcaaataacactcacttatc 220  Q
    |||||||||||||||||| ||||||| |||||| |||| ||||| || |||| ||| |  |||||||| || || ||||||||||    
T  31600886 ccttttatataaatagaaactcaaactctaaatcatttcactcatacagttagagtcttagtctttcatatgacgctcacttatc 31600970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 33174369 - 33174333
Alignment:
Q  132 ttatcccttttatataaatagaagctcaaaccctaaa 168  Q
    ||||||||||||||||||||||| | |||||||||||    
T  33174369 ttatcccttttatataaatagaaacccaaaccctaaa 33174333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 7350459 - 7350571
Alignment:
Q  70 ggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaat 169  Q
    |||||||  |||||||||| |||||||||  ||||||||| ||||| ||||||||| |||||||||| ||||||||||||||| |    |||||||||||    
T  7350459 ggatataggcatccaccccgaacccatacttaaacccgtctcaaatgtagaaaattaatttattatcgcttttatataaatagtaatcgaaaccctaaat 7350558  T
Q  170 tattttactcaca 182  Q
     ||||||||||||    
T  7350559 cattttactcaca 7350571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 183
Target Start/End: Complemental strand, 17153251 - 17153093
Alignment:
Q  25 tgagttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaat 124  Q
    |||||||| ||||||||||||||||||||||| |||    ||| | |||||||  |  || ||||||||||||| |||||||||||| ||| ||||||||    
T  17153251 tgagttttttccgattttaaaacatgggtacgggacggataactatgatatatgtactcatcccaaacccatacccaaacccgtcccgaatgtagaaaat 17153152  T
Q  125 tgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
      |||||||| ||||| || ||||||||||   |||| ||||||| |||| ||||||||    
T  17153151 caatttattaccccttctagataaatagaaatccaaaacctaaataatttcactcacac 17153093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 40187724 - 40187859
Alignment:
Q  86 cccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacacgg 185  Q
    ||||||| ||||| ||||| |||||| ||||||||||||| |||||||| | ||||||||||||||| |    ||| ||||||| ||||||||||||  |    
T  40187724 cccaaactcatacccaaactcgtcccgaatatagaaaattaatttattacctcttttatataaatagtaatgaaaatcctaaatcattttactcacatag 40187823  T
Q  186 tta-agtttcggtctttcaaataacactcacttatc 220  Q
    | | ||||||  ||||||| || |||||||||||||    
T  40187824 tcagagtttcaatctttcagatgacactcacttatc 40187859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 16311357 - 16311453
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactc 179  Q
    ||||||| ||||||||  |||||| ||| | ||| | ||||||  |||||||||||||||||||||||||||| | |||||||||||| |||||||||    
T  16311357 ccaccccgaacccatattcaaacctgtctcgaatgttgaaaatcaatttattatcccttttatataaatagaaac-caaaccctaaatcattttactc 16311453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 220
Target Start/End: Complemental strand, 38972947 - 38972808
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcac 181  Q
    ||||||| ||||||||| ||||||| || |||||  | |||||  |||||||| ||||||||||||||| ||| || ||||||||||| |||| | ||||    
T  38972947 ccaccccgaacccatactcaaacccatctcaaatgcataaaatcaatttattaacccttttatataaatcgaaactgaaaccctaaatcatttgattcac 38972848  T
Q  182 acggtta-agtttcggtctttcaaataacactcacttatc 220  Q
    || |||| ||| |   ||||||| || |||||||||||||    
T  38972847 actgttagagtctaaatctttcatatgacactcacttatc 38972808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 35584096 - 35584041
Alignment:
Q  127 atttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    |||||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||    
T  35584096 atttatta-cccttttatataaatagaaactcaaaccctaaatcattttgctcacac 35584041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 6810237 - 6810082
Alignment:
Q  28 gttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattga 127  Q
    |||||| ||||||||| |||| |||||||  ||  | ||||||||||||   |  |||||| ||||||||| ||||||| |||| |||   ||||||  |    
T  6810237 gttttccccgattttagaacacgggtacggaacgggtaacgaggatataagtactcaccccgaacccatacccaaacccatcccgaatggtgaaaatcaa 6810138  T
Q  128 tttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||||  ||||||||||| ||||||| | |||||| ||||| |||| ||||||||    
T  6810137 tttattgccccttttatatcaatagaaacccaaaccttaaatgatttcactcacac 6810082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 12457530 - 12457441
Alignment:
Q  94 catacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||| |||||||||||| ||| ||||||||  |||||||| |||||| |||||||||||| |  |||  |||||| |||| ||||||||    
T  12457530 catacccaaacccgtcccgaatgtagaaaatcaatttattacccctttaatataaatagaaacctaaagtctaaatcatttcactcacac 12457441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 29664984 - 29664904
Alignment:
Q  94 catacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattt 174  Q
    ||||| |||||||||||| ||| || |||||  ||||| || ||||||||| ||||||||| ||||||| |||||| ||||    
T  29664984 catacccaaacccgtcccgaatgtacaaaatcaatttactaccccttttatttaaatagaaactcaaactctaaatcattt 29664904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 39887142 - 39887237
Alignment:
Q  59 acatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaa 154  Q
    ||||| ||||||||||||   |||| ||  ||||||| || ||||||||||| |||  ||||||||  ||||||| || |||||||||||||||||    
T  39887142 acatgtaacgaggatatacatatccgcctaaaacccacactcaaacccgtcctaaacgtagaaaatcaatttattctctcttttatataaatagaa 39887237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 5908753 - 5908795
Alignment:
Q  83 caccccaaacccatacacaaacccgtcccaaatatagaaaatt 125  Q
    |||||||||||||||| |||||||||||||||| || ||||||    
T  5908753 caccccaaacccatacccaaacccgtcccaaatgtaaaaaatt 5908795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 24207677 - 24207611
Alignment:
Q  117 tagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||||||| ||||||||  ||||||||||||||| || || ||||||||||| | || ||||||||    
T  24207677 tagaaaattaatttattaatccttttatataaataaaaactaaaaccctaaataacttcactcacac 24207611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 4920853 - 4920808
Alignment:
Q  80 atccaccccaaacccatacacaaacccgtcccaaatatagaaaatt 125  Q
    ||||||||| ||||||||| |||||||||||||||| || ||||||    
T  4920853 atccaccccgaacccatacccaaacccgtcccaaatgtaaaaaatt 4920808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 12447406 - 12447365
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaa 123  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  12447406 ccaccccgaacctatacccaaacccgtcccaaatatagaaaa 12447365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 27900473 - 27900566
Alignment:
Q  90 aacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||||||| |||| ||| ||| ||| || |||||  |||||||  | ||||||||||||||||| || ||||||||||| |||| | ||||||    
T  27900473 aacccatacccaaatccgccccgaatgtataaaatcaatttatttcctcttttatataaatagaaactgaaaccctaaatcatttcagtcacac 27900566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 18451949 - 18452021
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaa 154  Q
    ||||||| ||| ||||  ||||| |||||| | | ||||||||  |||||||||||||||||||| |||||||    
T  18451949 ccaccccgaactcataatcaaactcgtcccgattgtagaaaatcaatttattatcccttttatattaatagaa 18452021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 10925504 - 10925665
Alignment:
Q  80 atccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactc 179  Q
    ||||||||| |||||||||  |||| | | || ||| || |||| | ||||||||| |||||||||||||||||| || ||||||||||| |||| |||     
T  10925504 atccaccccgaacccatacctaaactcattccgaatgtaaaaaaataatttattattccttttatataaatagaatctgaaaccctaaatcatttcacta 10925603  T
Q  180 acacggt-taagtttcggtctttcaaataacactcacttatctaatttctctctctgctcct 240  Q
    ||||  |  ||||||  ||||||||||  |||||||||| ||||| |||||||||| |||||    
T  10925604 acacaatcaaagttttagtctttcaaacgacactcacttctctaagttctctctcttctcct 10925665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 220
Target Start/End: Complemental strand, 9402606 - 9402475
Alignment:
Q  90 aacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacacggtta- 188  Q
    ||||||||| |||||| ||| | ||| ||||||||  ||||| || ||| ||||||||||||||| | |||||||||||| |||| |||||||| || |     
T  9402606 aacccatactcaaacctgtctcgaatgtagaaaatcaatttagtaccccatttatataaatagaaacccaaaccctaaatcatttcactcacacagtcag 9402507  T
Q  189 agtttcggtctttcaaataacactcacttatc 220  Q
    ||| | ||||||||| || |||||||||||||    
T  9402506 agtctaggtctttcatatcacactcacttatc 9402475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 1947860 - 1947993
Alignment:
Q  88 caaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacacggtt 187  Q
    ||||||||||| ||||| ||| |||||| ||||||||  |||||||| |||||||||||||||| ||   |||||||||| | ||| ||||||||| ||     
T  1947860 caaacccatactcaaactcgttccaaatgtagaaaatcaatttattaccccttttatataaataaaaatccaaaccctaagtcattatactcacacagtc 1947959  T
Q  188 a-agtttcggtctttcaaataacactcacttatc 220  Q
    | ||| || | |||||| || |||||||||||||    
T  1947960 agagtatctgactttcagatgacactcacttatc 1947993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 256498 - 256645
Alignment:
Q  25 tgagttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaat 124  Q
    ||||||||| ||||||| |||||||||||||| |||  | || | | |||||   | ||||||||||||||||| ||||||| ||| |||| ||||||||    
T  256498 tgagttttccccgatttcaaaacatgggtacgagacgggtaatgggcatataggtacccaccccaaacccatacccaaacccctcctaaatgtagaaaat 256597  T
Q  125 tgatttattatcccttttatat-aaatagaagctcaaaccctaaatta 171  Q
      ||||| || ||||||||| | |||||||| | ||||| ||||||||    
T  256598 caatttactaccccttttatttaaaatagaaacacaaactctaaatta 256645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 13769089 - 13769005
Alignment:
Q  90 aacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattt 174  Q
    ||||||||  |||||||||||  ||| ||||||||  ||||||||  |||||||||||||| ||| |||||||| ||||||||||    
T  13769089 aacccatatccaaacccgtcctgaatgtagaaaatcaatttattactccttttatataaattgaaactcaaaccataaattattt 13769005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 32959887 - 32959790
Alignment:
Q  80 atccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttact 178  Q
    ||||||||| ||||||||| |||| |||||  |||| ||||||||  |||||||| |||| ||||||||  || | | |||||||||||||||||||||    
T  32959887 atccaccccgaacccatac-caaatccgtcataaatgtagaaaatcaatttattacccctattatataagcagtaacccaaaccctaaattattttact 32959790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 34179129 - 34179176
Alignment:
Q  139 ttttatataaatagaagctcaaaccctaaattattttactcacacggt 186  Q
    |||||||||||||||| |||||||||||||| |||||| || ||||||    
T  34179129 ttttatataaatagaaactcaaaccctaaatcattttattcgcacggt 34179176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 174
Target Start/End: Original strand, 32054392 - 32054426
Alignment:
Q  140 tttatataaatagaagctcaaaccctaaattattt 174  Q
    |||||||||||||||||||||||||||||| ||||    
T  32054392 tttatataaatagaagctcaaaccctaaatcattt 32054426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 14321857 - 14321793
Alignment:
Q  117 tagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcac 181  Q
    ||||||||| |||||||| |  |||||||||||||||| |||||| | ||||| |||| ||||||    
T  14321857 tagaaaattaatttattacctattttatataaatagaaactcaaatcttaaatcatttcactcac 14321793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 32053172 - 32053080
Alignment:
Q  23 tatgagttttctccgattttaaaacatgggtacgtgacatgcaacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaat 115  Q
    |||| |||||| ||||||| ||||||||| || | |||  | |||| | ||||||  | ||||||||||||||||| ||||||||||| ||||    
T  32053172 tatgggttttccccgatttcaaaacatggatatgggacgggtaacgggtatatatgtacccaccccaaacccatacccaaacccgtccaaaat 32053080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 42243429 - 42243346
Alignment:
Q  65 aacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataa 148  Q
    |||||||||||||| ||||||||||||  ||||| ||||||| ||| |||| ||||||||  |||||||| |||||||||||||    
T  42243429 aacgaggatatatttatccaccccaaattcatacccaaacccatcctaaatgtagaaaatcaatttattaccccttttatataa 42243346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 772882 - 772957
Alignment:
Q  107 gtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    ||||||||||||||||||  |||||||| ||||||| ||||||||||| |||||||| | ||| |||| ||||||||    
T  772882 gtcccaaatatagaaaatcaatttatta-cccttttgtataaatagaaactcaaaccttgaatcatttcactcacac 772957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 37032179 - 37032259
Alignment:
Q  100 caaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactca 180  Q
    ||||||| |||  ||| ||||||||| |||||||| || ||||||||||||| || |||||||||||||| |||| |||||    
T  37032179 caaacccatcctgaatgtagaaaattaatttattacccattttatataaataaaaactcaaaccctaaatcatttcactca 37032259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 27252547 - 27252441
Alignment:
Q  127 atttattatcccttttatataaatagaagctcaaaccctaaattattttactcacacggtta-agtttcggtctttcaaataacactcacttatctaatt 225  Q
    |||||||| || |||||||||||||||| |  ||| | ||||| |||| |||||||| |||| ||| || |||||||| || |||||||||||||| | |    
T  27252547 atttattacccattttatataaatagaaaccaaaatcataaatcatttcactcacacagttagagtatcagtctttcagatgacactcacttatcttagt 27252448  T
Q  226 tctctct 232  Q
    |||||||    
T  27252447 tctctct 27252441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 30904878 - 30904976
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactca 180  Q
    ||||||| ||||||||| |||| ||||| | ||| ||| ||||  ||||| || ||||||||||||||||||| | |||||||| ||| |||| |||||    
T  30904878 ccaccccgaacccatacccaaatccgtctcgaatgtaggaaatcaatttactaccccttttatataaatagaaacccaaacccttaatcatttcactca 30904976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 7469841 - 7469874
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaat 115  Q
    ||||||| ||||||||||||||||||||||||||    
T  7469841 ccaccccgaacccatacacaaacccgtcccaaat 7469874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 17146211 - 17146256
Alignment:
Q  80 atccaccccaaacccatacacaaacccgtcccaaatatagaaaatt 125  Q
    ||||||||| ||||||||||||||||| |||||||| || ||||||    
T  17146211 atccaccccgaacccatacacaaacccttcccaaatgtaaaaaatt 17146256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 44252772 - 44252731
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaa 123  Q
    ||||||| ||||||||| ||||||||||||||||||| ||||    
T  44252772 ccaccccgaacccatacccaaacccgtcccaaatataaaaaa 44252731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 183
Target Start/End: Complemental strand, 3774116 - 3773998
Alignment:
Q  65 aacgaggatatattcatccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccc 164  Q
    ||||||||||||   | ||||||  ||||||||| |||| ||||||| ||| ||||||||  |||||||| ||||||||||||| ||| | | ||||| |    
T  3774116 aacgaggatataggtacccaccctgaacccatactcaaatccgtcccgaatttagaaaatcaatttattaccccttttatataattaggaacccaaacgc 3774017  T
Q  165 taaattattttactcacac 183  Q
     |||| |||||||||||||    
T  3774016 aaaatcattttactcacac 3773998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 3157105 - 3157026
Alignment:
Q  90 aacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaat 169  Q
    |||| |||| ||||||||||||||| |||||||||  |||||||| ||||  ||||||||||||| | |||| |||||||    
T  3157105 aacctatacccaaacccgtcccaaacatagaaaatcaatttattacccctactatataaatagaaacccaaatcctaaat 3157026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 11472788 - 11472874
Alignment:
Q  94 catacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcac 181  Q
    ||||| |||| |||||||||||  |||||||  ||||||||| |||||||||||||||||| |  ||||||||||| |||| ||||||    
T  11472788 catacccaaatccgtcccaaatg-agaaaatcaatttattataccttttatataaatagaaaccaaaaccctaaatcatttcactcac 11472874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 43550491 - 43550577
Alignment:
Q  94 catacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactca 180  Q
    |||||||||||||||||  ||| | |||| |  |||||||| ||||| ||||||||||||| | |||||||||||| |||| |||||    
T  43550491 catacacaaacccgtcctgaatgtggaaagtctatttattaccccttctatataaatagaaacccaaaccctaaatcatttcactca 43550577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 29292732 - 29292640
Alignment:
Q  82 ccaccccaaacccatacacaaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattt 174  Q
    |||||| ||||||||||  |||| |||| | ||| ||||||||  ||||| || |||||||||||||| ||||   |||||||||||||||||    
T  29292732 ccaccctaaacccatacctaaactcgtctcgaatgtagaaaatcaatttactaccccttttatataaagagaaatccaaaccctaaattattt 29292640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 37218015 - 37217933
Alignment:
Q  100 caaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcacac 183  Q
    |||||||||||  ||||||||||||  ||| |||||| ||||| ||||||||||| |||||  ||||||| |||||||| ||||    
T  37218015 caaacccgtcctgaatatagaaaatcaatt-attatctcttttgtataaatagaaactcaatgcctaaatcattttactaacac 37217933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1322 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 1118 - 1037
Alignment:
Q  100 caaacccgtcccaaatatagaaaattgatttattatcccttttatataaatagaagctcaaaccctaaattattttactcac 181  Q
    ||||||||||   ||| ||||||||| |||||||| || |||||||||||||||| |||||| | ||||| |||| ||||||    
T  1118 caaacccgtcatgaatgtagaaaattaatttattacccattttatataaatagaaactcaaatcttaaatcatttcactcac 1037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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