View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6571_low_4 (Length: 467)

Name: NF6571_low_4
Description: NF6571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6571_low_4
NF6571_low_4
[»] chr1 (3 HSPs)
chr1 (117-361)||(26521145-26521389)
chr1 (69-118)||(26523131-26523180)
chr1 (11-58)||(26523205-26523252)
[»] chr5 (3 HSPs)
chr5 (156-241)||(27689812-27689897)
chr5 (192-241)||(22406914-22406963)
chr5 (192-241)||(22416753-22416802)
[»] chr2 (3 HSPs)
chr2 (168-231)||(32122575-32122638)
chr2 (166-241)||(34415439-34415514)
chr2 (157-241)||(41755185-41755269)
[»] chr7 (1 HSPs)
chr7 (119-229)||(35375746-35375855)
[»] chr4 (1 HSPs)
chr4 (119-216)||(11883552-11883648)
[»] scaffold0027 (1 HSPs)
scaffold0027 (157-241)||(1161-1245)
[»] chr8 (1 HSPs)
chr8 (190-242)||(28285139-28285191)
[»] chr3 (2 HSPs)
chr3 (201-241)||(27025453-27025493)
chr3 (201-241)||(27036661-27036701)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 117 - 361
Target Start/End: Complemental strand, 26521389 - 26521145
Alignment:
Q  117 tttactggataagtgtgcatgattttatggtgagaatttgcaaattaatcaaacacattagtttatagaagattatgtgcgttgtggatcacagaaacta 216  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26521389 tttactagataagtgtgcatgattttatggtgagaatttgcaaattaatcaaacacattagtttatagaagattatgtgcgttatggatcacagaaacta 26521290  T
Q  217 ttagtgcaatgtggaccacaaaaaagttatgcagacgaggtttgactaatcatcaaactttgggtcaatttgtaacgttttacatgttcatataatccta 316  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  26521289 tcggtgcaatgtggaccacaaaaaagttatgcagacgaggtttgactaatcagcaaactttgggtcaatttggaacgttttacatgttcatataatccta 26521190  T
Q  317 ttgaccatatttacggtatttacatgccctgactctataaatacc 361  Q
    ||||| |||||||||||||||||||| ||||| ||| ||||||||    
T  26521189 ttgactatatttacggtatttacatgtcctgattctgtaaatacc 26521145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 26523180 - 26523131
Alignment:
Q  69 ggggagttgttaaaaaccgaaccaacctaattgtatttcagccacttttt 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26523180 ggggaattgttaaaaaccgaaccaacctaattgtatttcagccacttttt 26523131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 26523252 - 26523205
Alignment:
Q  11 tactagtggcttctaccatgaccatatacgtggacattggttaagatt 58  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26523252 tactagtggcttcaaccatgaccatatacgtggacattggttaagatt 26523205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 27689897 - 27689812
Alignment:
Q  156 gcaaattaatcaaacacattagtttatagaagattatgtgcgttgtggatcacagaaactattagtgcaatgtggaccacaaaaaa 241  Q
    |||||| ||||||||||| |  |||||||||| || ||||||| ||||| |||| ||||| | |||||||||||||||||| ||||    
T  27689897 gcaaatgaatcaaacacacttatttatagaagtttttgtgcgtcgtggaccacaaaaactgtcagtgcaatgtggaccacacaaaa 27689812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 22406963 - 22406914
Alignment:
Q  192 tgtgcgttgtggatcacagaaactattagtgcaatgtggaccacaaaaaa 241  Q
    ||||||||||||| ||||||||||||  ||||||||||||||||| ||||    
T  22406963 tgtgcgttgtggaccacagaaactatcggtgcaatgtggaccacacaaaa 22406914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 22416802 - 22416753
Alignment:
Q  192 tgtgcgttgtggatcacagaaactattagtgcaatgtggaccacaaaaaa 241  Q
    ||||||| ||||| ||||||||||||  ||||||||||||||||| ||||    
T  22416802 tgtgcgtcgtggaacacagaaactatcggtgcaatgtggaccacacaaaa 22416753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 32122638 - 32122575
Alignment:
Q  168 aacacattagtttatagaagattatgtgcgttgtggatcacagaaactattagtgcaatgtgga 231  Q
    |||||| ||||||||||||| ||||||||||  ||||||||| ||||| || ||| ||||||||    
T  32122638 aacacactagtttatagaagtttatgtgcgtcatggatcacataaactgttggtgtaatgtgga 32122575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 34415514 - 34415439
Alignment:
Q  166 caaacacattagtttatagaagattatgtgcgttgtggatcacagaaactattagtgcaatgtggaccacaaaaaa 241  Q
    |||||||| || |||||||||| || ||||||| ||||| |||||||| | || ||||||||||| ||||| ||||    
T  34415514 caaacacactaatttatagaagtttttgtgcgtcgtggaccacagaaattgttggtgcaatgtggcccacataaaa 34415439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 41755269 - 41755185
Alignment:
Q  157 caaattaatcaaacacattagtttatagaagattatgtgcgttgtggatcacagaaactattagtgcaatgtggaccacaaaaaa 241  Q
    ||||| || ||||||| | | |||||||||| |||||||||| |||||| ||| ||| | | ||||||||| | |||||||||||    
T  41755269 caaatgaaacaaacacgtcaatttatagaagtttatgtgcgtcgtggattacataaagtgtcagtgcaatgggaaccacaaaaaa 41755185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 35375855 - 35375746
Alignment:
Q  119 tactggataagtgtgcatgattttatggtgagaatttgcaaattaatcaaacacattagtttatagaagattatgtgcgttgtggatcacagaaactatt 218  Q
    |||||||||| ||| ||||||||| || || |  ||||||||| || ||||||||  | |||||||||| || ||||| |||| ||||||| ||| | ||    
T  35375855 tactggataattgttcatgattttgtgatgtgg-tttgcaaatgaaccaaacacacaaatttatagaaggttttgtgcattgtagatcacaaaaaatgtt 35375757  T
Q  219 agtgcaatgtg 229  Q
    |||||||||||    
T  35375756 agtgcaatgtg 35375746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 11883552 - 11883648
Alignment:
Q  119 tactggataagtgtgcatgattttatggtgagaatttgcaaattaatcaaacacattagtttatagaagattatgtgcgttgtggatcacagaaacta 216  Q
    |||||||||||||| ||||||||| ||||| |  ||| | |||||||||||||  | | ||||| |||| |||||||||| ||||| | |||||||||    
T  11883552 tactggataagtgttcatgattttgtggtgtg-gtttaccaattaatcaaacatgtcaatttattgaagtttatgtgcgtcgtggaccgcagaaacta 11883648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 1245 - 1161
Alignment:
Q  157 caaattaatcaaacacattagtttatagaagattatgtgcgttgtggatcacagaaactattagtgcaatgtggaccacaaaaaa 241  Q
    ||||| |||||||||| | | ||||||||| | | |||| ||| |||| |||| ||| |||  ||||||||||||||||||||||    
T  1245 caaatgaatcaaacacgtcaatttatagaaaactttgtgtgttatggaccacaaaaaatatcggtgcaatgtggaccacaaaaaa 1161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 28285139 - 28285191
Alignment:
Q  190 tatgtgcgttgtggatcacagaaactattagtgcaatgtggaccacaaaaaag 242  Q
    |||| |||||| ||| ||||||||||||  ||||||||||||||||| |||||    
T  28285139 tatgggcgttgcggaccacagaaactatcggtgcaatgtggaccacataaaag 28285191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 27025453 - 27025493
Alignment:
Q  201 tggatcacagaaactattagtgcaatgtggaccacaaaaaa 241  Q
    |||| |||||||||| |||||||||||||||||||| ||||    
T  27025453 tggaccacagaaactgttagtgcaatgtggaccacagaaaa 27025493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 27036661 - 27036701
Alignment:
Q  201 tggatcacagaaactattagtgcaatgtggaccacaaaaaa 241  Q
    |||| |||||||||| |||||||||||||||||||| ||||    
T  27036661 tggaccacagaaactgttagtgcaatgtggaccacagaaaa 27036701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University