View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6571_low_5 (Length: 440)
Name: NF6571_low_5
Description: NF6571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6571_low_5 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 95 - 440
Target Start/End: Original strand, 23035635 - 23035981
Alignment:
| Q |
95 |
tctttaactacttcatttatcatgtcacacatgtacgaagtacttctcttggactctcattaaatattaccacaatccccaaaagaagtttacgtgtgaa |
194 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
23035635 |
tctttaaccacttcatttatcatgtcacacatgtacgaagtagttttcttggactctcataaaatatttccacaatcccctaaagaagtttacctgtgaa |
23035734 |
T |
|
| Q |
195 |
cctgtaaactaatatagggttttgccgaataatagccaaacacggttaagttgcacaatcttcatttatttggcttctagaaaatatggataagttacac |
294 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23035735 |
cctataaactaatatagggttttgccgaatactagccaaacatggttaagttacacaatcttcatttatttggcttctagaaaatatggataagttacac |
23035834 |
T |
|
| Q |
295 |
aatcttcatttcttttaactcttattgccaaacatagcctacttatttctaccgatcgaaggtatctgttcggtaccctgctaaaaatattacaggtgaa |
394 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
23035835 |
aatcttcatttattttaactcttatagccaaacatagcctacttatttctaccgacggaaggtatctgttcggtactctgctaaaaatattacaggtaaa |
23035934 |
T |
|
| Q |
395 |
ctgctaaaggcttaa-ttttcttcttatgaagctcatattacatgca |
440 |
Q |
| |
|
|||| ||||| |||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
23035935 |
ctgccaaaggtttaatttttcgtcttatgaagctcatatgacatgca |
23035981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 270 - 386
Target Start/End: Original strand, 23148399 - 23148515
Alignment:
| Q |
270 |
tctagaaaatatggataagttacacaatcttcatttcttttaactcttattgccaaacatagcctacttatttctaccgatcgaaggtatctgttcggta |
369 |
Q |
| |
|
||||| ||| |||| |||||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||| |||||||| | ||||| | |
|
|
| T |
23148399 |
tctagtaaacatggttaagttgaacaatcttcatttattttaactcttattgccaagcatagcccacttatttcgaccggaagaaggtatgttttcggca |
23148498 |
T |
|
| Q |
370 |
ccctgctaaaaatatta |
386 |
Q |
| |
|
| |||||||||| |||| |
|
|
| T |
23148499 |
ctctgctaaaaacatta |
23148515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 380
Target Start/End: Original strand, 23145561 - 23145671
Alignment:
| Q |
270 |
tctagaaaatatggataagttacacaatcttcatttcttttaactcttattgccaaacatagcctacttatttctaccgatcgaaggtatctgttcggta |
369 |
Q |
| |
|
||||| ||| |||| |||||| |||||||| |||| ||||||||||||| ||||| ||||||| ||||||||| || | |||||||| | ||||| | |
|
|
| T |
23145561 |
tctagtaaacatggttaagttgaacaatctttatttattttaactcttatagccaagcatagccaacttatttcgactggaagaaggtatgttttcggca |
23145660 |
T |
|
| Q |
370 |
ccctgctaaaa |
380 |
Q |
| |
|
| ||||||||| |
|
|
| T |
23145661 |
ctctgctaaaa |
23145671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 9639062 - 9639115
Alignment:
| Q |
76 |
ttctatcccttttcctctctctttaactacttcatttatcatgtcacacatgta |
129 |
Q |
| |
|
||||||||||||| ||| |||||| | |||||||||||||||||||| ||||| |
|
|
| T |
9639062 |
ttctatccctttttctccctctttgatcacttcatttatcatgtcacatatgta |
9639115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University