View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6571_low_7 (Length: 407)
Name: NF6571_low_7
Description: NF6571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6571_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 20629254 - 20628864
Alignment:
| Q |
1 |
tcatcagttgctgccatattgaatgaatcatacttgataagtttcaatcacnnnnnnnnnn--tccaaagttgaagagaaaacatacaatgatatatatc |
98 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20629254 |
tcatcagttgctgccatattgaatgagtcatacttgataagtttcaatcacaaaaaaaaataatccaaagttgaagagaaaacatacaatgatatatatc |
20629155 |
T |
|
| Q |
99 |
attggtttcacacaccttgtttagaattagaaggcttcataacatgaagaagaactatagtatcctgattctgaacagtgtgagtaagtgcccattgcaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20629154 |
attggtttcacacaccttgtttagaattagaaggcttcatgacatgaagaagaactatagtatcctgattctgaacagtgtgagtaagtgcccattgcaa |
20629055 |
T |
|
| Q |
199 |
agcacctttagcttcaaaactagaatcaatcacaatcataatcttccgactaactacggatccttgtttcacaccatcgtcaaatttctcctcgcaaaca |
298 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20629054 |
agcacctttggcttcaaaactagaatcaatcacaatcataatcttccgactaactacggatccttgtttcacaccatcgtcaaatttctcctcgcaaaca |
20628955 |
T |
|
| Q |
299 |
ctgcatgaattctcagtaattttctgatcaattttagcatcatcacttttatcatgcttggcttgtatagttggcgaacgcaccctcgcat |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20628954 |
ctgcatgaattctcagtaattttctgatcaattttagcatcatcacttttatcatgcttggcttgtatagttggcgaacgcaccctcgcat |
20628864 |
T |
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