View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6572_low_1 (Length: 485)
Name: NF6572_low_1
Description: NF6572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6572_low_1 |
 | |
|
| [»] scaffold0312 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 7 - 474
Target Start/End: Complemental strand, 407950 - 407486
Alignment:
| Q |
7 |
atagaaacatggcaatttttggtgttgaaggattttcagcactaccaagccattgcttgcaattctgttgtgggtttttcgcatttgctttgttggctaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
407950 |
atagaaacatggcaatttttggtgttgaagggttttcagcactaccaagccattgcttgcaattctgttgtgggttttttgcatttgctttgttggctaa |
407851 |
T |
|
| Q |
107 |
ctttttgagagatttgaaccctaaaaatatagggaagtgggccccacttccaatggcaatggctgtaccttttgttgtaggtgcttactttgccattgac |
206 |
Q |
| |
|
||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
407850 |
cttgttgagcgatttgaaccctaaaaacatagggaagtgggtcccacttccaatggcaatggctgtaccttttgttgtaggtgcttactttgccattgac |
407751 |
T |
|
| Q |
207 |
atgtgtgtggggagtttggtagtgtttgtttggagtttgatgaaaaacaaggaagcaggtttgatgattccagctgttgcttctggtttgatttgtggag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
407750 |
atgtgtgtggggagtttggtagtgtttgtttggagttggatgaaaaacaaggaagcaggtttgatgattccagctgttgcttctggtttgatttgtggag |
407651 |
T |
|
| Q |
307 |
atgggatatgggttcttccttcttctcttcttgcttggtttaagattcatccaccaatttgcatgaacttctttgcaaataattagaagaagttctctag |
406 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
407650 |
atgggatatgggttcttccttcatctcttcttgcttggtttaagattcatccaccaatttgtatgaacttcgttgcaaataatta---gaagttctctag |
407554 |
T |
|
| Q |
407 |
cagatctttagaggaaataggtgtagtcaaacttagttgtcactatttcttagtgctttagttcataa |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
407553 |
cagatctttagaggaaataggtgtagtcaaatttagttgtcactatttcttagtgctttagttcataa |
407486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 7 - 474
Target Start/End: Complemental strand, 438261 - 437794
Alignment:
| Q |
7 |
atagaaacatggcaatttttggtgttgaaggattttcagcactaccaagccattgcttgcaattctgttgtgggtttttcgcatttgctttgttggctaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
438261 |
atagaaacatggcaatttttggtgttgaaggtttttcagcactaccaagccattgcttgcaattctgttgtgggttttttgcatttgctttgttggctaa |
438162 |
T |
|
| Q |
107 |
ctttttgagagatttgaaccctaaaaatatagggaagtgggccccacttccaatggcaatggctgtaccttttgttgtaggtgcttactttgccattgac |
206 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
438161 |
tttgttgagagatttgaaccctaaaaacatagggaagtgggtcccacttccaatggcaatggctgtaccttttgttgtaggtgcttactttgccattgac |
438062 |
T |
|
| Q |
207 |
atgtgtgtggggagtttggtagtgtttgtttggagtttgatgaaaaacaaggaagcaggtttgatgattccagctgttgcttctggtttgatttgtggag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
438061 |
atgtgtgtggggagtttggtagtgtttgtttggagttggatgaaaaacaaggaagcaggtttgatgattccagctgttgcttctggtttgatttgtggag |
437962 |
T |
|
| Q |
307 |
atgggatatgggttcttccttcttctcttcttgcttggtttaagattcatccaccaatttgcatgaacttctttgcaaataattagaagaagttctctag |
406 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| | |
|
|
| T |
437961 |
atgggatatgggttcttccttcatctcttcttgcttggtttaagattcatccaccaatttgtatgaacttcttggcaaataagtagaagaagttctcttg |
437862 |
T |
|
| Q |
407 |
cagatctttagaggaaataggtgtagtcaaacttagttgtcactatttcttagtgctttagttcataa |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
437861 |
cagatctttagaggaaataggtgtagtcaaatttaggtgtcactatttcttagtactttagttcataa |
437794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 426052 - 425625
Alignment:
| Q |
1 |
tcatcaatagaaacatggcaatttttggtgttgaaggattttcagcactaccaagccattgcttgcaattctgttgtgggtttttcgcatttgctttgtt |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
426052 |
tcatctatagaaacatggcaattcttggtgttgaaggcttttcagcactaccaagtcattgcttgcaattctgttatgggttttttgcatttgctttgtt |
425953 |
T |
|
| Q |
101 |
ggctaactttttgagagatttgaaccctaaaaatatagggaagtgggccccacttccaatggcaatggctgtaccttttgttgtaggtgcttactttgcc |
200 |
Q |
| |
|
||||||||| |||||||||| ||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
425952 |
ggctaacttgttgagagattggaatcctaaaaatattggaaagtgggtcccacttccaatggcaatggctgtaccttttgttgtaggtgcttactttgcc |
425853 |
T |
|
| Q |
201 |
attgacatgtgtgtggggagtttggtagtgtttgtttggagtttgatgaaaaacaaggaagcaggtttgatgattccagctgttgcttctggtttgattt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
425852 |
attgacatgtgtgtggggagtttggtagtgtttgtttggagttggatgaaaaaagaggaagcaggtttgatgattccagctgttgcttctggtttgattt |
425753 |
T |
|
| Q |
301 |
gtggagatgggatatgggttcttccttcttctcttcttgcttggtttaagattcatccaccaatttgcatgaacttctttgcaaataattagaagaagtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
425752 |
gtggagatgggatatgggttcttccttcatctcttcttgcttggtttaagattcatccaccaatttgtatgaacttcttggcaaataagtagaagaagtt |
425653 |
T |
|
| Q |
401 |
ctctagcagatctttagaggaaataggt |
428 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
425652 |
ctcttgcagatctttagaggaaataggt |
425625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 400278 - 399881
Alignment:
| Q |
1 |
tcatcaatagaaacatggcaatttttggtgttgaaggattttcagcactaccaagccattgcttgcaattctgttgtgggtttttcgcatttgctttgtt |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
400278 |
tcatctatagaaacatggcaattcttggtgttgaaggcttttcagcactaccaagtcattgcttgcaattctgttatgggttttttgcatttgctttgtt |
400179 |
T |
|
| Q |
101 |
ggctaactttttgagagatttgaaccctaaaaatatagggaagtgggccccacttccaatggcaatggctgtaccttttgttgtaggtgcttactttgcc |
200 |
Q |
| |
|
||||||||| |||||||||| ||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
400178 |
ggctaacttgttgagagattggaatcctaaaaatattggaaagtgggtcccacttccaatggcaatggctgtaccttttgttgtaggtgcttactttgcc |
400079 |
T |
|
| Q |
201 |
attgacatgtgtgtggggagtttggtagtgtttgtttggagtttgatgaaaaacaaggaagcaggtttgatgattccagctgttgcttctggtttgattt |
300 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
400078 |
attgacatgtgtgtgggaagtttggtagtgtttgtttggagttggatgaaaaaagaggaagcaggtttgatgattccagctgttgcttctggtttgattt |
399979 |
T |
|
| Q |
301 |
gtggagatgggatatgggttcttccttcttctcttcttgcttggtttaagattcatccaccaatttgcatgaacttctttgcaaataattagaagaag |
398 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
399978 |
gtggagatgggatatgggttcttccttcatctcttcttgcttggtttaaggttcatccaccaatttgcatgaacttcttggcaaataagtagaagaag |
399881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 4498 - 4925
Alignment:
| Q |
1 |
tcatcaatagaaacatggcaatttttggtgttgaaggattttcagcactaccaagccattgcttgcaattctgttgtgggtttttcgcatttgctttgtt |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
4498 |
tcatctatagaaacatggcaattcttggtgttgaaggcttttcagcactaccaagtcattgcttgcaattctgttatgggttttttgcatttgctttgtt |
4597 |
T |
|
| Q |
101 |
ggctaactttttgagagatttgaaccctaaaaatatagggaagtgggccccacttccaatggcaatggctgtaccttttgttgtaggtgcttactttgcc |
200 |
Q |
| |
|
||||||||| |||||||||| ||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4598 |
ggctaacttgttgagagattggaatcctaaaaatattggaaagtgggtcccacttccaatggcaatggctgtaccttttgttgtaggtgcttactttgcc |
4697 |
T |
|
| Q |
201 |
attgacatgtgtgtggggagtttggtagtgtttgtttggagtttgatgaaaaacaaggaagcaggtttgatgattccagctgttgcttctggtttgattt |
300 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4698 |
attgacatgtgtgtgggaagtttggtagtgtttgtttggagttggatgaaaaaagaggaagcaggtttgatgattccagctgttgcttctggtttgattt |
4797 |
T |
|
| Q |
301 |
gtggagatgggatatgggttcttccttcttctcttcttgcttggtttaagattcatccaccaatttgcatgaacttctttgcaaataattagaagaagtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
4798 |
gtggagatgggatatgggttcttccttcatctcttcttgcttggtttaagattcatccaccaatttgtatgaacttcttggcaaataagtagaagaagtt |
4897 |
T |
|
| Q |
401 |
ctctagcagatctttagaggaaataggt |
428 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
4898 |
ctcttgcagatctttagaggaaataggt |
4925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 7 - 379
Target Start/End: Original strand, 42041369 - 42041741
Alignment:
| Q |
7 |
atagaaacatggcaatttttggtgttgaaggattttcagcactaccaagccattgcttgcaattctgttgtgggtttttcgcatttgctttgttggctaa |
106 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||||| || || ||| |||||||||||||| |||||||| ||||||||||||||| | ||||||| |
|
|
| T |
42041369 |
atagaaacatggcaattttgggtgtggaaggcttttctgctcttccagatcattgcttgcaattgtgttgtggatttttcgcatttgctatagtggctaa |
42041468 |
T |
|
| Q |
107 |
ctttttgagagatttgaaccctaaaaatatagggaagtgggccccacttccaatggcaatggctgtaccttttgttgtaggtgcttactttgccattgac |
206 |
Q |
| |
|
|| | |||||| | ||| || | | ||||| ||| |||||||||||||| |||||||| |||||| | || |||| |||||||||||||| |
|
|
| T |
42041469 |
tttggtcagagatcttggcccacaacaagttgggaaatggattccacttccaatggctatggctgtgccttttttagttggtggctactttgccattgat |
42041568 |
T |
|
| Q |
207 |
atgtgtgtggggagtttggtagtgtttgtttggagtttgatgaaaaacaaggaagcaggtttgatgattccagctgttgcttctggtttgatttgtggag |
306 |
Q |
| |
|
||||||||||| ||||| || ||||||| ||| | || |||| || |||||||| ||||||||| |||| || ||||||||||||||||||||||||| |
|
|
| T |
42041569 |
atgtgtgtgggcagtttagttgtgtttgcatggcatatgctgaacaaaaaggaagctggtttgatggttcctgcagttgcttctggtttgatttgtggag |
42041668 |
T |
|
| Q |
307 |
atgggatatgggttcttccttcttctcttcttgcttggtttaagattcatccaccaatttgcatgaacttctt |
379 |
Q |
| |
|
|||| | ||| |||||||||| || |||| |||| ||| ||| ||| ||| ||||| ||||||| |||||| |
|
|
| T |
42041669 |
atggattgtggattcttccttcatccattctcgctttgttaaaggttcgtcccccaatatgcatgagcttctt |
42041741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 28748207 - 28748174
Alignment:
| Q |
277 |
cagctgttgcttctggtttgatttgtggagatgg |
310 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
28748207 |
cagctgttgcttctggtttgatatgtggagatgg |
28748174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 28752220 - 28752187
Alignment:
| Q |
277 |
cagctgttgcttctggtttgatttgtggagatgg |
310 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
28752220 |
cagctgttgcttctggtttgatatgtggagatgg |
28752187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 29245295 - 29245206
Alignment:
| Q |
150 |
ccacttccaatggcaatggctgtaccttttgttgtaggtgcttactttgccattgacatgtgtgtggggagtttggtagtgtttgtttgg |
239 |
Q |
| |
|
|||||||||||||| ||||| ||||||| | |||| |||| |||||||||||||||||||| || |||||| || ||||| ||||| |
|
|
| T |
29245295 |
ccacttccaatggctatggcaatacctttctatttaggaccttattttgccattgacatgtgtgttggaagtttgatattgtttatttgg |
29245206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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