View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6572_low_2 (Length: 255)
Name: NF6572_low_2
Description: NF6572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6572_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 65 - 235
Target Start/End: Original strand, 30367004 - 30367170
Alignment:
| Q |
65 |
ttcttcatttacttctactattggcgacacaatggcggtgaaattatgccgaaatggccaatagttggtatgctactgtcggtgttgcgtcatctgtcaa |
164 |
Q |
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| T |
30367004 |
ttcttcatttacatctactataggcgacacaatggcggtgagattatgccgaattggccaatagttggtatgctattgtcggtgttgcgtcatctgtcaa |
30367103 |
T |
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| Q |
165 |
atttcaatgaccatttcaccttagttttgaaacgtacgtcatggaggaacgtttcgatttgaaggaccctg |
235 |
Q |
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| T |
30367104 |
atttcaatgaccatttcaccttagttttgaa----atgtcatggaggaacgtttcgatttgaaggaccctg |
30367170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 13102224 - 13102110
Alignment:
| Q |
119 |
tggccaatagttggtatgctactgtcggtgttgcgtcatctgtcaaatttcaatgaccatttcaccttagttttgaaacgtacgtcatggaggaacgttt |
218 |
Q |
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| T |
13102224 |
tggccaataattggtatgctaccagcgcttttgcgtcacctgtccaatttccatgatcatacaaccttagttttaaaacat----catggaggaacgttt |
13102129 |
T |
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| Q |
219 |
cgatttgaaggaccctggt |
237 |
Q |
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| T |
13102128 |
cgatttgaaggagcctggt |
13102110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 69 - 237
Target Start/End: Complemental strand, 31376787 - 31376623
Alignment:
| Q |
69 |
tcatttacttctactattggcgacacaatggcggtgaaattatgccgaaatggccaatagttggtatgctactgtcggtgttgcgtcatctgtcaaattt |
168 |
Q |
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| T |
31376787 |
tcatttacatctactattggcgacacaatggcggtgagattatgatgaattggccaatagttggtatgctactgtcggtgttgcgtcatctgtcaaattt |
31376688 |
T |
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| Q |
169 |
caatgaccatttcaccttagttttgaaacgtacgtcatggaggaacgtttcgatttgaaggaccctggt |
237 |
Q |
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| T |
31376687 |
caataaccatgtcaccttagttttgaa----aggtcatgaaggaatgtttcgatttgaaggaccctggt |
31376623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 237
Target Start/End: Original strand, 31385201 - 31385345
Alignment:
| Q |
90 |
gacacaatggcggtgaaattatgccgaaatggccaatagttggtatgctactgtcggtgttgcgtcatctg-tcaaatttcaatgaccatttcaccttag |
188 |
Q |
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| T |
31385201 |
gacacaatagcaatgaaattatgccgaattggccaataatttatttgctactatcggttttgcattatctgcccaattttcgatgatcatttcactttag |
31385300 |
T |
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| Q |
189 |
ttttgaaacgtacgtcatggaggaacgtttcgatttgaaggaccctggt |
237 |
Q |
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| T |
31385301 |
tttcgaa----acgtcatggaggaacgtttcaattcgaagtatcctggt |
31385345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 31397810 - 31397856
Alignment:
| Q |
13 |
ctacatcagtaaggttcgttagaaaaattagactgctctacctgcca |
59 |
Q |
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| T |
31397810 |
ctacatcagtcaggttggttccaaaaattagactgctctacctgcca |
31397856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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