View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6573_high_1 (Length: 423)
Name: NF6573_high_1
Description: NF6573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6573_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 33943116 - 33943506
Alignment:
| Q |
18 |
catggttccgttgatgagtcaagaaatccacacaacaattagatttgaggaaacaatgagaaaatgagaaactccaaatcagtcgatagaggagatttaa |
117 |
Q |
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| T |
33943116 |
catggttccgttgatgagtcaagaaatccacacaacaattagatttgaggaaacaatgagaaaatgagaaactccaaatcagtcgatagaggagatttaa |
33943215 |
T |
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| Q |
118 |
aaccttttcaaagaaaggtttaaggcaagagattgagagattgacgttgattcacatggaaaaacttactatttgatggaagnnnnnnnnttccatcaaa |
217 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33943216 |
aaccttttcaaagaaaggtttaag-------attgagggattgacgttgattcacatggaaaaacttactatttgatggaagaaaaaaaattccatcaaa |
33943308 |
T |
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| Q |
218 |
gagtaataaactcatataacataggacaaattcatgctatgtacgaaccaacttaatatcatgtggaatagcttacatctaaacaccaataacattgtta |
317 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33943309 |
gagtaataaactcata--acataggacaaattcatgctatgtacgagccaacttaatatcatgtggaatagcttacatctaaacaccaataacattgtta |
33943406 |
T |
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| Q |
318 |
ttcccctaaattatagtaaaaacctttgaaggatttgccactcgagccttgaataaggccttcacgggtcgagttacttattatccaatgatgatgtcca |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
33943407 |
ttcccctaaattatagtaaaaacctttgaaggatttgccactcgagccttgaataaggccttcacgggtcgagttacttattatccaatcatgatatcca |
33943506 |
T |
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