View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6573_high_4 (Length: 240)
Name: NF6573_high_4
Description: NF6573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6573_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 37416882 - 37417107
Alignment:
| Q |
1 |
tagatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactcacataatgctaatgacacaatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37416882 |
tagatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactcacataatgctaatgacacaatcca |
37416981 |
T |
|
| Q |
101 |
gaggtgttccaaacacctcaaatgacttgacagcattatttccaacagaaattgtcatcacagtttttccaatagtaaaaatatacgaaaaaactaaggt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
37416982 |
caagtgttccaaacacctcaaatgacttgacagcattatttccaacagaaattgtcatcacagtttttccaatagtaaaaatataagaaaaaactaagtt |
37417081 |
T |
|
| Q |
201 |
gccgttttcgtcaaaagctccctgat |
226 |
Q |
| |
|
||||||||| ||||||||| |||||| |
|
|
| T |
37417082 |
gccgttttcatcaaaagctgcctgat |
37417107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 37424414 - 37424639
Alignment:
| Q |
1 |
tagatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactcacataatgctaatgacacaatcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37424414 |
tagatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggacttacataatgctaatgacacaatcca |
37424513 |
T |
|
| Q |
101 |
gaggtgttccaaacacctcaaatgacttgacagcattatttccaacagaaattgtcatcacagtttttccaatagtaaaaatatacgaaaaaactaaggt |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
37424514 |
caagtgttccaaacacctcaaatgacttgacagcattatttccaacagaatttgtcatcacagtttttccaatagtaaaaatatatgaaaaaactaagtt |
37424613 |
T |
|
| Q |
201 |
gccgttttcgtcaaaagctccctgat |
226 |
Q |
| |
|
||||||||| ||||||||| |||||| |
|
|
| T |
37424614 |
gccgttttcatcaaaagctgcctgat |
37424639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 8573759 - 8573811
Alignment:
| Q |
40 |
tattagagaatgaaattttgttgttcaacaaggactcacataatgctaatgac |
92 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
8573759 |
tattagagaatgcaattttgttggtcaacaagggctcatgtaatgctaatgac |
8573811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University