View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6573_low_2 (Length: 303)

Name: NF6573_low_2
Description: NF6573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6573_low_2
NF6573_low_2
[»] chr6 (2 HSPs)
chr6 (1-286)||(1055456-1055741)
chr6 (94-163)||(12250827-12250896)
[»] chr5 (3 HSPs)
chr5 (94-162)||(36274976-36275044)
chr5 (1-161)||(25714571-25714729)
chr5 (94-157)||(11933351-11933414)
[»] chr2 (3 HSPs)
chr2 (1-158)||(9145533-9145690)
chr2 (100-163)||(26159780-26159843)
chr2 (112-158)||(9493646-9493692)
[»] chr8 (4 HSPs)
chr8 (1-155)||(30541820-30541975)
chr8 (5-163)||(11256162-11256320)
chr8 (1-59)||(32475618-32475676)
chr8 (94-161)||(32475688-32475753)
[»] chr4 (4 HSPs)
chr4 (1-164)||(48825373-48825535)
chr4 (1-164)||(55416818-55416981)
chr4 (94-199)||(4492982-4493087)
chr4 (1-62)||(26698102-26698163)
[»] scaffold0519 (1 HSPs)
scaffold0519 (5-163)||(9076-9234)
[»] chr7 (1 HSPs)
chr7 (1-154)||(34257518-34257671)
[»] chr3 (1 HSPs)
chr3 (1-62)||(39978327-39978388)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 1055741 - 1055456
Alignment:
Q  1 taattaaaagcaaaattaggatgagttgccttcatccaccaataagattgcaacttaattttgtttaaaaggtgatgaataaagtccctttgatgtttaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||    
T  1055741 taattaaaagcaaaattaggatgagttgccttcatccaccaataagattgcaacttaattttgtctaaaaggtgatgaataaagtcctcttgatgtttaa 1055642  T
Q  101 aaattctagcattcctgtcacgccaaacaatccaaacacaagagagccaaatcaagtaaaaagtgttgcatatgtttttgaagaaaccatccaacgatct 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  1055641 aaattctagcatttctgtcacgccaaacaatccaaacacaagagagccaaatcaagtaaaaagtgttgcatatgtttttaaagaaaccatccaacaatct 1055542  T
Q  201 gaattgaagtaaatacatttcaacatagtgaaacaatccttaacaaaagccgatataagtacattcacatagttggacatagcatg 286  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1055541 gaattgaagtaaatacatttcaacatagtgaaacagtccttaacaaaagccgatataagtacattcacatagttggacatagcatg 1055456  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 12250896 - 12250827
Alignment:
Q  94 tgtttaaaaattctagcattcctgtcacgccaaacaatccaaacacaagagagccaaatcaagtaaaaag 163  Q
    |||| ||||| |||||||||| |||||||||||| ||||||||| ||||| |||||||| ||||||||||    
T  12250896 tgttgaaaaactctagcattcttgtcacgccaaataatccaaacgcaagaaagccaaattaagtaaaaag 12250827  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 36274976 - 36275044
Alignment:
Q  94 tgtttaaaaattctagcattcctgtcacgccaaacaatccaaacacaagagagccaaatcaagtaaaaa 162  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||| || ||||||||||||||||||||    
T  36274976 tgttgaaaaattctagcattcttgtcacgtcaaacaatccaaacagaaaagagccaaatcaagtaaaaa 36275044  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 25714571 - 25714729
Alignment:
Q  1 taattaaaagcaaaattaggatgagttgccttcatccaccaataagattgcaacttaattttgtttaaaaggtgatgaataaagtccctttgatgtttaa 100  Q
    ||||| |||| ||||||||| ||| ||| ||||| ||| ||||| ||||| | ||||||||||| || ||||| ||||||  | |||| ||| | || ||    
T  25714571 taattgaaagtaaaattagggtgatttgtcttcagccaacaatatgattgaagcttaattttgtctataaggttatgaattgattccccttgttattgaa 25714670  T
Q  101 aaattctagcattcctgtcacgccaaacaatccaaacacaagagagccaaatcaagtaaaa 161  Q
    |   |||||||||| |||   |||||||||| ||||||||||||||||||||||| |||||    
T  25714671 ac--tctagcattcgtgttgagccaaacaattcaaacacaagagagccaaatcaactaaaa 25714729  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 11933414 - 11933351
Alignment:
Q  94 tgtttaaaaattctagcattcctgtcacgccaaacaatccaaacacaagagagccaaatcaagt 157  Q
    |||| ||||| ||| |||||||| ||||| ||||| |||||||||||||| |||||||||||||    
T  11933414 tgttgaaaaactcttgcattcctttcacgtcaaacgatccaaacacaagacagccaaatcaagt 11933351  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 9145690 - 9145533
Alignment:
Q  1 taattaaaagcaaaattaggatgagttgccttcatccaccaataagattgcaacttaattttgtttaaaaggtgatgaata-aagtccctttgatgttta 99  Q
    |||||||||||||||||||| ||| ||||||||| ||||||| ||||||| | ||||||||| | || ||| |||| |||| || ||||  |  ||||      
T  9145690 taattaaaagcaaaattagggtgatttgccttcaaccaccaaaaagattggagcttaattttatctagaagctgattaatagaattccccgt-ttgttgg 9145592  T
Q  100 aaaattctagcattcctgtcacgccaaacaatccaaacacaagagagccaaatcaagta 158  Q
    || | ||| | |||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  9145591 aagactctggaattcttgtcacgccaaacaattcaaacacaagagagccatatcaagta 9145533  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 26159780 - 26159843
Alignment:
Q  100 aaaattctagcattcctgtcacgccaaacaatccaaacacaagagagccaaatcaagtaaaaag 163  Q
    |||| ||||||||||||||||||||| | ||||||||||||||| |||||||| || |||||||    
T  26159780 aaaactctagcattcctgtcacgccagataatccaaacacaagaaagccaaattaaataaaaag 26159843  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 9493692 - 9493646
Alignment:
Q  112 ttcctgtcacgccaaacaatccaaacacaagagagccaaatcaagta 158  Q
    |||| ||||||||||| |||||||| |||||| ||||||||||||||    
T  9493692 ttcccgtcacgccaaataatccaaatacaagatagccaaatcaagta 9493646  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 30541975 - 30541820
Alignment:
Q  1 taattaaaagcaaaattaggatgagttgccttcatccaccaataagattgcaacttaattttgtttaaaaggtgatgaataaagtccctttgatgtt-ta 99  Q
    |||||||||||||||||||||||| |||  |||| |||| |  | ||||| | |||||||||   || ||| ||||||||| |||| |  |  |||| ||    
T  30541975 taattaaaagcaaaattaggatgatttgttttcaaccacaagaaggattggagcttaattttccctataagttgatgaatagagtctcccttttgttata 30541876  T
Q  100 aaaattctagcattcctgtcacgccaaacaatccaaacacaagagagccaaatcaa 155  Q
    |||| |||||| ||| ||||| ||||||||||| ||||||||||||||||||||||    
T  30541875 aaaactctagccttcttgtcatgccaaacaatctaaacacaagagagccaaatcaa 30541820  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 11256320 - 11256162
Alignment:
Q  5 taaaagcaaaattaggatgagttgccttcatccaccaataagattgcaacttaattttgtttaaaaggtgatgaataaagtccctttgatgtttaaaaat 104  Q
    |||||| ||| ||||||||| ||| ||||| ||||||| |||| |  | ||||||||| | || ||  |||| |||| | || | || ||||| ||| |     
T  11256320 taaaagtaaagttaggatgatttgtcttcaaccaccaaaaagacttgagcttaattttatctataaactgattaatagaatctcctttatgttgaaagac 11256221  T
Q  105 tctagcattcctgtcacgccaaacaatccaaacacaagagagccaaatcaagtaaaaag 163  Q
    ||||||||||  |||| ||||||||||||||||| ||||||| || ||||| |||||||    
T  11256220 tctagcattctggtcatgccaaacaatccaaacaaaagagagtcagatcaaataaaaag 11256162  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32475618 - 32475676
Alignment:
Q  1 taattaaaagcaaaattaggatgagttgccttcatccaccaataagattgcaacttaat 59  Q
    ||||| ||||| |||||||||||| ||| ||||| ||||||||| ||||| ||||||||    
T  32475618 taattgaaagcgaaattaggatgatttgtcttcaaccaccaatatgattgaaacttaat 32475676  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 32475688 - 32475753
Alignment:
Q  94 tgtttaaaaattctagcattcctgtcacgccaaacaatccaaacacaagagagccaaatcaagtaaaa 161  Q
    |||| ||||||| ||||||| |||||||||||||| ||| ||||||   |||| ||||||||||||||    
T  32475688 tgttgaaaaattatagcatttctgtcacgccaaactatctaaacac--tagagtcaaatcaagtaaaa 32475753  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 48825373 - 48825535
Alignment:
Q  1 taattaaaagcaaaattaggatgagttgccttcatccaccaataagattgcaacttaattttgtttaaaaggtgatgaat--aaagtccctttgatgttt 98  Q
    ||||||||| |||||||||||||| ||||||||| ||||||| ||||||| | ||||||||||| |  ||| |||| |||  |||| ||||||  | ||     
T  48825373 taattaaaaacaaaattaggatgatttgccttcaaccaccaaaaagattgtaccttaattttgtct-caagctgattaatagaaagccccttt--tattg 48825469  T
Q  99 aaaaattctagcattcctgtcacgccaaacaatccaaacacaagagagccaaatcaagtaaaaagt 164  Q
    ||||| |||| |||||||||| |||||||   |||||||| |||| ||||| ||||| ||||||||    
T  48825470 aaaaactctaacattcctgtcgcgccaaattgtccaaacataagaaagccatatcaaataaaaagt 48825535  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 55416981 - 55416818
Alignment:
Q  1 taattaaaagcaaaattaggatgagttgccttcatccaccaataagattgcaacttaattttgtttaaaaggtgatgaataaagtccctttgatgtttaa 100  Q
    |||||||||||||||||||||||| ||||||||| ||||||  |  |||| | ||||||||| | || ||| ||||||||||| |    ||  ||||  |    
T  55416981 taattaaaagcaaaattaggatgatttgccttcaaccaccagaagaattgtagcttaattttatctataagctgatgaataaaattttctttttgttgga 55416882  T
Q  101 aaattctagcattcctgtcacgccaaacaatccaaacacaagagagccaaatcaagtaaaaagt 164  Q
    | | | ||| |||| ||||| ||||||||||||||  ||||| ||||||||||||||| |||||    
T  55416881 agactatagaattcatgtcatgccaaacaatccaagtacaagtgagccaaatcaagtagaaagt 55416818  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 4492982 - 4493087
Alignment:
Q  94 tgtttaaaaattctagcattcctgtcacgccaaacaatccaaacacaagagagccaaatcaagtaaaaagtgttgcatatgtttttgaagaaaccatcca 193  Q
    |||| ||||| | |||||||||| |||||||||| ||||||||  ||||| |||||||| || |||||||  |  || ||||||||  |||| |||||||    
T  4492982 tgttgaaaaactttagcattcctatcacgccaaataatccaaatgcaagaaagccaaattaaataaaaagcataacaaatgtttttttagaagccatcca 4493081  T
Q  194 acgatc 199  Q
    ||||||    
T  4493082 acgatc 4493087  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 26698163 - 26698102
Alignment:
Q  1 taattaaaagcaaaattaggatgagttgccttcatccaccaataagattgcaacttaatttt 62  Q
    |||||||||||||||||||||||| ||| ||||| ||||||  | ||||| | |||||||||    
T  26698163 taattaaaagcaaaattaggatgatttggcttcaaccaccagaaggattgaagcttaatttt 26698102  T

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Target: scaffold0519 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 163
Target Start/End: Original strand, 9076 - 9234
Alignment:
Q  5 taaaagcaaaattaggatgagttgccttcatccaccaataagattgcaacttaattttgtttaaaaggtgatgaataaagtccctttgatgtttaaaaat 104  Q
    |||||| ||| ||||||||| ||| ||||| ||||||| |||| |  | ||||||||| | || ||  |||| |||| | || | || ||||| ||| |     
T  9076 taaaagtaaagttaggatgatttgtcttcaaccaccaaaaagacttgagcttaattttatctataaactgattaatagaatctcctttatgttgaaagac 9175  T
Q  105 tctagcattcctgtcacgccaaacaatccaaacacaagagagccaaatcaagtaaaaag 163  Q
    ||||||||||  |||| ||||||||||||||||| ||||||| || ||||| |||||||    
T  9176 tctagcattctggtcatgccaaacaatccaaacaaaagagagtcagatcaaataaaaag 9234  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 34257671 - 34257518
Alignment:
Q  1 taattaaaagcaaaattaggatgagttgccttcatccaccaataagattgcaacttaattttgtttaaaaggtgatgaataaagtccctttgatgtttaa 100  Q
    |||||||||| ||| ||||||||| ||||||||  ||||||  | || || | ||||||||||| || ||| |||| |||| | || |||| ||||| ||    
T  34257671 taattaaaagtaaagttaggatgatttgccttcgaccaccagaacgactgaagcttaattttgtctataagttgattaatagaatctcttttatgttgaa 34257572  T
Q  101 aaattctagcattcctgtcacgccaaacaatccaaacacaagagagccaaatca 154  Q
    | | | |  ||||| | |||||||||||||||||||||  ||| ||||||||||    
T  34257571 agactatgacattcttatcacgccaaacaatccaaacagtagaaagccaaatca 34257518  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39978388 - 39978327
Alignment:
Q  1 taattaaaagcaaaattaggatgagttgccttcatccaccaataagattgcaacttaatttt 62  Q
    ||||||||||||||| || ||||||||| ||||| ||| ||| | ||||| |||||||||||    
T  39978388 taattaaaagcaaaaatatgatgagttgtcttcaaccatcaaaaggattggaacttaatttt 39978327  T

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