View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6573_low_3 (Length: 244)
Name: NF6573_low_3
Description: NF6573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6573_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 37416694 - 37416482
Alignment:
| Q |
1 |
ctcatgacatgctaaaacacttgggaacattggaatatcagtaaatgcttgttactcttgcacattcatgtcagaagatgcttttagcattcttaaagaa |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37416694 |
ctcatgacatgctagaacacttgggaacattggaatatcagtaaatgcttgttactcttgcacattcatgtcagaagatgcctttagcattcttaaagaa |
37416595 |
T |
|
| Q |
101 |
ctgnnnnnnntactagtttctatgatgacacggtagctgcatcgttaacagaaagatatgagtggatgagacagtcccctttgaggaaacaaataataca |
200 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37416594 |
ctgaaaaaaatactagtttctatgacgacacggtagctgcatcgttaacagaaagatatgagtggatgagacagtcccctctgaggaaacaaataataca |
37416495 |
T |
|
| Q |
201 |
cagctcttgcaaa |
213 |
Q |
| |
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||||||||||||| |
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| T |
37416494 |
cagctcttgcaaa |
37416482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 37424226 - 37424014
Alignment:
| Q |
1 |
ctcatgacatgctaaaacacttgggaacattggaatatcagtaaatgcttgttactcttgcacattcatgtcagaagatgcttttagcattcttaaagaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37424226 |
ctcatgacatgctagaacacttgggaacattggaatatcagtaaatgcttgttactcttgcacattcatgtcagaagatgcctttagcattcttaaagaa |
37424127 |
T |
|
| Q |
101 |
ctgnnnnnnntactagtttctatgatgacacggtagctgcatcgttaacagaaagatatgagtggatgagacagtcccctttgaggaaacaaataataca |
200 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37424126 |
ctgaaaaaaatactagtttctatgacgacacggtagctgcatcgttaacagaaagatatgagtggatgagacagtcccctatgaggaaacaaataataca |
37424027 |
T |
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| Q |
201 |
cagctcttgcaaa |
213 |
Q |
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||||||||||||| |
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| T |
37424026 |
cagctcttgcaaa |
37424014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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