View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6574_high_7 (Length: 351)
Name: NF6574_high_7
Description: NF6574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6574_high_7 |
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| [»] chr6 (9 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 351
Target Start/End: Original strand, 13910275 - 13910620
Alignment:
| Q |
10 |
acatcatcatatattatattacaaagagaaagcccaccattctatttccaagaggaaactttcttctccaacctcaacatatttcaaaacactcaatttt |
109 |
Q |
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| T |
13910275 |
acataatcatatattatattacaaagagaaagcccaccattctattccctagaggaaactttctcctccaacctcaac-tcgttcaaaacacttaatttt |
13910373 |
T |
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| Q |
110 |
tacggattacaaaatccagacgtgtaaatcagggtttcttttgcacattcggattgcataatcaagacaaatcaaannnnnnngatatgtt------ggg |
203 |
Q |
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| T |
13910374 |
taccgattacaaaatccagacgtgtaaatcagggtttctgttgcacgtccggatcgcataatcaagacaaatcga-gtgttttgatatattttggccggg |
13910472 |
T |
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| Q |
204 |
gaagaggagtagccatcttcctagaacttcaatgcaaataattcacaaaccgttgacaaaagaggagaaaccattcatcttccaagggtaggacattcac |
303 |
Q |
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| T |
13910473 |
gaagaggagtagccatcttcctagaactacaatgcaaataattcacaaaccattgacaaaagaggagaaaccattcatcttccaagggtaggacattcac |
13910572 |
T |
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| Q |
304 |
tgcacacctcaatctgatccatcaccaacacactattccctgtatcat |
351 |
Q |
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| T |
13910573 |
tgcacacctcaatctgatccatcaccaacacactattccctgtatcat |
13910620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 332
Target Start/End: Original strand, 14106331 - 14106446
Alignment:
| Q |
217 |
catcttcctagaacttcaatgcaaataattcacaaaccgttgacaaaagaggagaaaccattcatcttccaagggtaggacattcactgcacacctcaat |
316 |
Q |
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| T |
14106331 |
catcttcctagagttacaatgaaaataattcacaaaacattcataaaagaggagaaaccattcatcttccaagaataggactttgactgcaccccttaag |
14106430 |
T |
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| Q |
317 |
ctgatccatcaccaac |
332 |
Q |
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| T |
14106431 |
cttatcgatcaccaac |
14106446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 14021312 - 14021418
Alignment:
| Q |
233 |
caatgcaaataattcacaaaccgttgacaaaagaggagaaaccattcatcttccaagggtaggacattcactgcacacctcaatctgatccatcaccaac |
332 |
Q |
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| T |
14021312 |
caatgcaaataattcacaaaccattaataaaataagagaaaccattcatcttccaagagtaaatctttgactgcacaccttaatctgattcaccaccaac |
14021411 |
T |
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| Q |
333 |
acactat |
339 |
Q |
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|||||| |
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| T |
14021412 |
gcactat |
14021418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 14023962 - 14024038
Alignment:
| Q |
81 |
cctcaacatatttcaaaacactcaatttttacggattacaaaatccagacgtgtaaatcagggtttcttttgcacat |
157 |
Q |
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| T |
14023962 |
cctcaacatctctcaaaacactcaatttgtctgaattacacaatcccgacgtgtaaaacagggtgtcttttgcacat |
14024038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 14109109 - 14109211
Alignment:
| Q |
237 |
gcaaataattcacaaaccgttgacaaaagaggagaaaccattcatcttccaagggtaggacattcactgcacacctcaatctgatccatcaccaacacac |
336 |
Q |
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| T |
14109109 |
gcaaataattcacaaatcattcataaaagaaaagaaagcattcatcttcctagagtaggtctttgactgcacaccttaatttgattcaccacgaacgcac |
14109208 |
T |
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| Q |
337 |
tat |
339 |
Q |
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||| |
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| T |
14109209 |
tat |
14109211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 13863822 - 13863777
Alignment:
| Q |
233 |
caatgcaaataattcacaaaccgttgacaaaagaggagaaaccatt |
278 |
Q |
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| T |
13863822 |
caatgcaaataattcacaaaacattcataaaagaggagaaaccatt |
13863777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 13876324 - 13876271
Alignment:
| Q |
233 |
caatgcaaataattcacaaaccgttgacaaaagaggagaaaccattcatcttcc |
286 |
Q |
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| T |
13876324 |
caatgcaaataattcgcaaaacattcataaaagaggataaaccattcatcttcc |
13876271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 297
Target Start/End: Complemental strand, 13894445 - 13894344
Alignment:
| Q |
196 |
atgttggggaagaggagtagccatcttcctagaacttcaatgcaaataattcacaaaccgttgacaaaagaggagaaaccattcatcttccaagggtagg |
295 |
Q |
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| T |
13894445 |
atgttggagacgatgagaagtcatcttactagagttacaatgcaaataattcataaaacattcataaaagaggagaaaacattcatcctcctagagtagg |
13894346 |
T |
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| Q |
296 |
ac |
297 |
Q |
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|| |
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| T |
13894345 |
ac |
13894344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 13894313 - 13894281
Alignment:
| Q |
304 |
tgcacacctcaatctgatccatcaccaacacac |
336 |
Q |
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| T |
13894313 |
tgcacaccttaatctgatccatcaccaacacac |
13894281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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