View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6574_high_8 (Length: 328)
Name: NF6574_high_8
Description: NF6574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6574_high_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 50484949 - 50484639
Alignment:
| Q |
18 |
gatggtagagttgtttgtgtgaaaaagaagcgttggtatatagcattattataaggggaaccggtgacagattacttggcaagaggtgaagaagcattgc |
117 |
Q |
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| T |
50484949 |
gatggtagagttgtttgtgtgaaaaagaagcgttggtatatagcattattataaggggaaccggtgacagattacttggcaagaggtgaagaagcattgc |
50484850 |
T |
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| Q |
118 |
atgtcgtggctgcattgcatgaaactatgtagtacaagaagcaacacctgtcctcttaaatgactagtgtctctgctaaaattacttagacaaaacagca |
217 |
Q |
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| T |
50484849 |
atgtcgtggctgcattgcatgaaactatgtagtacaagaagcaacacctgtcctcttaaatgactagtgtctctgctaaaattacttagacaaaacagca |
50484750 |
T |
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| Q |
218 |
tatcactatgtgatatgaaacctgggaatatgtatgtttggataaatgattctattgaataattttggtaccataattactgtgtgacatgcatgctggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50484749 |
tatcactatgtgatatgaaacctgggaatatgtatgtttggataaatgattctattgaataattttggtaccataattactgtgtgacatgcatgctggt |
50484650 |
T |
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| Q |
318 |
aaattatcctc |
328 |
Q |
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| T |
50484649 |
aaattatcctc |
50484639 |
T |
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