View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6574_high_9 (Length: 298)
Name: NF6574_high_9
Description: NF6574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6574_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 138 - 286
Target Start/End: Complemental strand, 13910741 - 13910592
Alignment:
| Q |
138 |
atgatagtgtaagctgtatatatgttctaaagtta-tttttatgatatgatatttcaagtttgaaaattttaagaaaaaattattttagactttatatct |
236 |
Q |
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| T |
13910741 |
atgatagtgtaagctttatataggttcaaaagttaatttttgtgatatagtatttcatgtttgaaagttgtaaaaaaattatattttagactttatatct |
13910642 |
T |
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| Q |
237 |
aaagtggttaacacttaaactatgatacagggaatagtgtgttgatgatg |
286 |
Q |
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| T |
13910641 |
aaagtggttaacacttaaactatgatacagggaatagtgtgttggtgatg |
13910592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 14109494 - 14109435
Alignment:
| Q |
6 |
tttacatataatttctattaaaaaactgttcatttttagtctctatagtttcttaaataa |
65 |
Q |
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| T |
14109494 |
tttacatataatttctattgaaatactgttcatttttagtctctacagtttcttaaataa |
14109435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 13474034 - 13474091
Alignment:
| Q |
6 |
tttacatataatttctattaaaaaactgttcatttttagtctctatagtttcttaaataa |
65 |
Q |
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| T |
13474034 |
tttacacataatttctattaaaa--ctgttcatctttagtctctatagtttcttaaataa |
13474091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 14083688 - 14083622
Alignment:
| Q |
6 |
tttacatataatttctattaaaaaactgttcatttttagtctctatagtttcttaaataatgcgttc |
72 |
Q |
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| T |
14083688 |
tttacttatcatttctattgaaatactgttcatttttagtctctacagttttttaaataatgtgttc |
14083622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 14024303 - 14024263
Alignment:
| Q |
219 |
attttagactttatatctaaagtggttaacacttaaactat |
259 |
Q |
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| T |
14024303 |
attttagactttatatctaaagtggttaatacttaaactat |
14024263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13910886 - 13910823
Alignment:
| Q |
1 |
atttctttacatataatttctattaaaaaactgttcatttttagtctctatagtttcttaaataat |
66 |
Q |
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| T |
13910886 |
atttttttacatataatatctattaaaatattgttcatttttagtctc--tagtttattaaataat |
13910823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 14109284 - 14109243
Alignment:
| Q |
218 |
tattttagactttatatctaaagtggttaacacttaaactat |
259 |
Q |
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| T |
14109284 |
tattttagactttatatataaagaggttaacacttaaactat |
14109243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 14106524 - 14106474
Alignment:
| Q |
218 |
tattttagactttatatctaaagtggttaacacttaaactatgatacaggg |
268 |
Q |
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| T |
14106524 |
tattttagactatatatctaaggtggttaacactcaaactattatataggg |
14106474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 13910780 - 13910743
Alignment:
| Q |
78 |
ttcttatttccttgaaaataagcatatgtttttataca |
115 |
Q |
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| T |
13910780 |
ttctcatttccttgaaaataagcatatgtttttacaca |
13910743 |
T |
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