View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6574_low_1 (Length: 808)
Name: NF6574_low_1
Description: NF6574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6574_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 68 - 761
Target Start/End: Complemental strand, 31769546 - 31768855
Alignment:
| Q |
68 |
atttgaattgtgtatataggactatatttggcaaacatttaagatttcagaaaatcaaattgatacgatttattttgtatgcaccaataaggaccaattg |
167 |
Q |
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| T |
31769546 |
atttgaattgtgtatataggactatatttggcaaacatttaagatttcagaaaatcaaattgatacgatttattttgtatgcaccaataaggaccaattg |
31769447 |
T |
|
| Q |
168 |
gaatataacatttttggcaaaagtggatcccctattggtgacaagaccctgaaatgagcaccaaaaagaagctgtccaatgtgaaggtgagcaagatatg |
267 |
Q |
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| T |
31769446 |
gaatataacatttttggcaaaagtggatcccctattggtgacaagaccctgaaatgagcaccaaaaagaagctgtccaatgtgaaggtgagcaagatatg |
31769347 |
T |
|
| Q |
268 |
acaccaatattaataattttggaagggcactagacaggacacccccactagaccagaagaatcagcctttaaaatcaaacccacccaccatacattatta |
367 |
Q |
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| T |
31769346 |
acaccaatattaataattttggaagggcactagacaggacacccccactagaccagaagaatcagcctttaaaatcaaacccacccaccatacattatta |
31769247 |
T |
|
| Q |
368 |
aggcttacaccaggggaccgccagtactaagctgctgtatgcataattgcataggacctttccaaacttattaataatatctttcaaagcttcttctnnn |
467 |
Q |
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| T |
31769246 |
aggcttacaccaggggaccgccagtactaaactgctgtatgcataattgcatagggcctttctaaacttattaataatatctttcaaagcttcttctaaa |
31769147 |
T |
|
| Q |
468 |
nnnnnnnnttcttttaaagctttctaaacatattaataatatcttttaaagcttcttctgaaaataaaataaaattaagtgactcttatgcaagtgtttc |
567 |
Q |
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| T |
31769146 |
aaaaaaaa-tcttttaaagctttctaaacatattaataatatcttttaaagcttcttctgaaaataaaataaaattaagtgactcttatgcaagtgtttc |
31769048 |
T |
|
| Q |
568 |
atttgatctaagacaaacttatttttgaaaatagtttgaaattcttatattatcggtgttgctatttgtaaggagaagctcgtgatattacttacttgtt |
667 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| ||||||||| |
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| T |
31769047 |
atttgatctaagacaaacttatttttgaaaatagtttgaaattcttatattatcggtgtttctatttgtaagtagaaactcgtgata----ttacttgtt |
31768952 |
T |
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| Q |
668 |
atcacaagtgagacggcgaaaaccaatgttgatttgacc----cnnnnnnntaacgaaaatgaatatcattgttttaaaattcaacttatattagttc |
761 |
Q |
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| T |
31768951 |
atcacaagtgagacggcgaaaaccaatgttgatttgaccaaaaaaaaaaaataaggaaaatgaatatcattgtttt-aaattcaacttatattagttc |
31768855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 31769582 - 31769532
Alignment:
| Q |
9 |
acatcatcaagtaattgcctacacactccaaaaaagatttgaattgtgtat |
59 |
Q |
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| T |
31769582 |
acatcatcaagtaattgcctacacactccaaaaaagatttgaattgtgtat |
31769532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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