View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6574_low_10 (Length: 324)

Name: NF6574_low_10
Description: NF6574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6574_low_10
NF6574_low_10
[»] chr7 (2 HSPs)
chr7 (99-308)||(394024-394249)
chr7 (48-92)||(36029613-36029657)
[»] chr1 (5 HSPs)
chr1 (42-162)||(17611146-17611268)
chr1 (46-155)||(13059921-13060033)
chr1 (55-158)||(41072794-41072901)
chr1 (28-125)||(51051845-51051939)
chr1 (28-92)||(19475785-19475849)
[»] scaffold0839 (1 HSPs)
scaffold0839 (42-162)||(4309-4432)
[»] chr4 (9 HSPs)
chr4 (42-162)||(17256540-17256662)
chr4 (52-158)||(30029445-30029553)
chr4 (52-158)||(30045714-30045822)
chr4 (42-122)||(19729778-19729858)
chr4 (28-122)||(3029978-3030071)
chr4 (28-126)||(54131774-54131872)
chr4 (61-162)||(30059441-30059544)
chr4 (42-94)||(24426284-24426336)
chr4 (28-158)||(17221056-17221189)
[»] chr2 (4 HSPs)
chr2 (28-157)||(28143014-28143145)
chr2 (42-162)||(735000-735123)
chr2 (42-162)||(25851129-25851251)
chr2 (28-162)||(44185675-44185811)
[»] chr3 (10 HSPs)
chr3 (43-159)||(34733574-34733691)
chr3 (42-152)||(41540979-41541090)
chr3 (28-154)||(10437846-10437975)
chr3 (42-126)||(19250626-19250710)
chr3 (28-154)||(36660543-36660674)
chr3 (46-162)||(30653342-30653459)
chr3 (42-158)||(13612339-13612454)
chr3 (43-105)||(9349594-9349656)
chr3 (109-162)||(13083534-13083585)
chr3 (28-162)||(9371211-9371347)
[»] chr5 (3 HSPs)
chr5 (28-126)||(33642109-33642207)
chr5 (28-148)||(30649459-30649581)
chr5 (28-126)||(13610627-13610725)
[»] chr6 (2 HSPs)
chr6 (42-162)||(7339281-7339400)
chr6 (28-126)||(29027727-29027825)
[»] scaffold0638 (1 HSPs)
scaffold0638 (28-155)||(3352-3482)
[»] scaffold0578 (1 HSPs)
scaffold0578 (28-92)||(6638-6702)
[»] scaffold0153 (1 HSPs)
scaffold0153 (67-162)||(33235-33332)
[»] scaffold1797 (1 HSPs)
scaffold1797 (28-97)||(833-902)


Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 99 - 308
Target Start/End: Complemental strand, 394249 - 394024
Alignment:
Q  99 ttgattttccaattaatgatttttgttttaattaatttgttgtcaaagtgaaagtgtgtggtat----------------caaaaatagaagtctaagag 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||| ||||||||    
T  394249 ttgattttccaattaatgatttttgttttaattaatttgttgtcaaagtgaaagtgtgtggtataatatatttgtcgtatcaaaaatagaaatctaagag 394150  T
Q  183 caaatatttttaaatagcttaatatctagtaatactcgtgtaacggatactaaagtatttttgtaggagatacttaagtacaagcttttagtgaggcttg 282  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  394149 caaatatttttaaataccttaatatctagtaatactcgtgtaacggatacttaagtatttttgtaggagatacttaagtacaagcttttagtgaggcttg 394050  T
Q  283 attaggcctcacacgacagttatggt 308  Q
    | ||||||||||||||||||||||||    
T  394049 agtaggcctcacacgacagttatggt 394024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 36029613 - 36029657
Alignment:
Q  48 attgtcgtattacttaaataaaaatcttctcgacatgaaataaaa 92  Q
    |||||||||||| ||||||||||| ||||||| || |||||||||    
T  36029613 attgtcgtattatttaaataaaaaacttctcgtcacgaaataaaa 36029657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 17611146 - 17611268
Alignment:
Q  42 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttttaatt--aatttgtt 139  Q
    ||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| | ||||| | |||||||||||||||||| | |   ||||||||    
T  17611146 tatacaattgtcgtaatacttaaataaaaatcttctcttcatgaaataaaatataactagatttcctaattaatgatttttgtttgattagaaatttgtt 17611245  T
Q  140 gtcaaagtgaaagtgtgtggtat 162  Q
    |||||| ||||||||||||||||    
T  17611246 gtcaaaatgaaagtgtgtggtat 17611268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 13060033 - 13059921
Alignment:
Q  46 caattgtcgtattacttaaataaaaatc-ttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt--taattaatttgttgtc 142  Q
    ||||||||||| ||||||||||||||   |||||  ||||||||||||||||||| ||||| | |||||| |||||||||||  | | ||||||||||||    
T  13060033 caattgtcgtagtacttaaataaaaaaaattctcttcatgaaataaaatataattggatttcctaattaaagatttttgtttgattagtaatttgttgtc 13059934  T
Q  143 aaagtgaaagtgt 155  Q
    |||||||||||||    
T  13059933 aaagtgaaagtgt 13059921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 41072901 - 41072794
Alignment:
Q  55 tattacttaaataaaaatcttctcgacatgaaataaaa--tataatttgattttccaattaatgatttttgttt--taattaatttgttgtcaaagtgaa 150  Q
    |||||| || ||||||||||||||  ||||||||||||  ||||||| |||||   ||||||||||||||||||  | | ||||||||||||||||| ||    
T  41072901 tattacgtagataaaaatcttctcatcatgaaataaaatatataattggatttcttaattaatgatttttgtttcattagtaatttgttgtcaaagtaaa 41072802  T
Q  151 agtgtgtg 158  Q
    ||| ||||    
T  41072801 agtatgtg 41072794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 51051939 - 51051845
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtt 125  Q
    ||||||| ||||  |||| |||||||| |||||| |||||||||||||||   |||| |||||||||||| |  |||| | |||||||||||||||||    
T  51051939 taaattagtaaaattatataattgtcgcattactcaaataaaaatcttct---catggaataaaatataactgaatttcctaattaatgatttttgtt 51051845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 19475785 - 19475849
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaa 92  Q
    ||||||| ||||  ||||| | || ||||||||||||||||||| ||||||| ||||||||||||    
T  19475785 taaattagtaaaattatacgactgccgtattacttaaataaaaaacttctcgtcatgaaataaaa 19475849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0839 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 4432 - 4309
Alignment:
Q  42 tatacaattgtcgtattacttaaataaaaatcttc--tcgacatgaaataaaatataatttgattttccaattaatgatttttgttt-taattaatttgt 138  Q
    ||||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||| | ||||||| |||||||||||||| ||| | | ||||||||    
T  4432 tatacaattgtcgtattacttaaatgaaaatcttcaatcgtcatgaaataaaatataaatggattttctaattaatgatttttttttattagtaatttgt 4333  T
Q  139 tgtcaaagtgaaagtgtgtggtat 162  Q
    | |||||||||||||| |||||||    
T  4332 tatcaaagtgaaagtgagtggtat 4309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 17256540 - 17256662
Alignment:
Q  42 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt--taattaatttgtt 139  Q
    ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||  |||||||| ||||||||||| ||||||  | | ||| |||||    
T  17256540 tatacaattgttgtattacttaaataaaaatcttatcgtcatgaaataaaatataacatgattttctaattaatgattattgtttggttagtaacttgtt 17256639  T
Q  140 gtcaaagtgaaagtgtgtggtat 162  Q
    ||||| |||||||||||| ||||    
T  17256640 gtcaaggtgaaagtgtgtagtat 17256662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 30029553 - 30029445
Alignment:
Q  52 tcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt--taattaatttgttgtcaaagtga 149  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| |  |||| | || |||||||||||||||  | | |||||||||||| ||||||    
T  30029553 tcgtgttacttaaataaaaatcttctcgtcatgaaataaaatataactgaatttcctaactaatgatttttgtttgattagtaatttgttgtccaagtga 30029454  T
Q  150 aagtgtgtg 158  Q
    |||||||||    
T  30029453 aagtgtgtg 30029445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 30045822 - 30045714
Alignment:
Q  52 tcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt--taattaatttgttgtcaaagtga 149  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| |  |||| | || |||||||||||||||  | | |||||||||||| ||||||    
T  30045822 tcgtgttacttaaataaaaatcttctcgtcatgaaataaaatataactgaatttcctaactaatgatttttgtttgattagtaatttgttgtccaagtga 30045723  T
Q  150 aagtgtgtg 158  Q
    |||||||||    
T  30045722 aagtgtgtg 30045714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 19729778 - 19729858
Alignment:
Q  42 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgattttt 122  Q
    ||||| |||||||||| ||| |||||| |||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||    
T  19729778 tatacgattgtcgtatcactaaaataataatcttctcgtcatgaaataaactataacttgattttctaattaatgattttt 19729858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 3029978 - 3030071
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgattttt 122  Q
    ||||||| ||||  ||||||||||| ||||||||||||||||||| |||||| |||||| ||||||||||||  ||||   ||||||||||||||    
T  3029978 taaattagtaaaattatacaattgttgtattacttaaataaaaat-ttctcgtcatgaagtaaaatataattgaatttcttaattaatgattttt 3030071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 54131774 - 54131872
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 126  Q
    ||||||||||||  ||||||||||| ||  ||||| || || |||||||||  ||||||||||||||||| |  |||||| ||||||||||||||||||    
T  54131774 taaattaataaaaatatacaattgttgtggtacttgaaaaataatcttctcttcatgaaataaaatataactgaattttctaattaatgatttttgttt 54131872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 30059544 - 30059441
Alignment:
Q  61 ttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt--taattaatttgttgtcaaagtgaaagtgtgtg 158  Q
    ||||||||||||||||| | ||||||||| |||||||    |||| | ||||||||||||||||||  | | |||||| ||||| |||||||||||||||    
T  30059544 ttaaataaaaatcttcttgtcatgaaatataatataacggaatttcctaattaatgatttttgtttgattagtaatttattgtccaagtgaaagtgtgtg 30059445  T
Q  159 gtat 162  Q
    ||||    
T  30059444 gtat 30059441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 24426284 - 24426336
Alignment:
Q  42 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaata 94  Q
    ||||||||| ||| |||||||||||||||||||||||  ||||||||||||||    
T  24426284 tatacaattatcgcattacttaaataaaaatcttctcttcatgaaataaaata 24426336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 17221189 - 17221056
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtttt 127  Q
    ||||||| ||||  ||||||||| | |||| |||||| |||| ||||||||  ||| ||||||||||||| | |||||   ||||||||||||||||||     
T  17221189 taaattagtaaagttatacaatttttgtat-acttaactaaacatcttctcatcataaaataaaatataactggatttattaattaatgatttttgtttg 17221091  T
Q  128 aat----taatttgttgtcaaagtgaaagtgtgtg 158  Q
    | |    ||||||||||||||||| ||||| ||||    
T  17221090 attagtataatttgttgtcaaagtaaaagtatgtg 17221056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 28143014 - 28143145
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt- 126  Q
    ||||||| ||||  |||||||| ||||||||| ||||||||||||||| ||  ||| |||||||||||||||  |||| | ||||||| ||||||||||     
T  28143014 taaattagtaaaattatacaatagtcgtattaattaaataaaaatcttttcatcataaaataaaatataattgaatttcctaattaatcatttttgtttg 28143113  T
Q  127 -taattaatttgttgtcaaagtgaaagtgtgt 157  Q
     | | |||||||||||||||||||||||||||    
T  28143114 attagtaatttgttgtcaaagtgaaagtgtgt 28143145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 735000 - 735123
Alignment:
Q  42 tatacaattgtcgtattacttaaat-aaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtttta--attaatttgt 138  Q
    ||||||||||||||||||||||||| ||||||||||||  || |||||||||||||| |  |||| | |||| | |||||||||||||  | ||||||||    
T  735000 tatacaattgtcgtattacttaaataaaaaatcttctcatcaagaaataaaatataactgaatttcctaattgacgatttttgttttattagtaatttgt 735099  T
Q  139 tgtcaaagtgaaagtgtgtggtat 162  Q
    | ||||||||||||||||| ||||    
T  735100 tttcaaagtgaaagtgtgtagtat 735123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 25851129 - 25851251
Alignment:
Q  42 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttttaat---taatttgt 138  Q
    ||||||||||||||||||||||||||||||||||| || | |||||| ||||| || |  |||| | ||||||| |||||| | |||||   ||||||||    
T  25851129 tatacaattgtcgtattacttaaataaaaatcttcccgtcgtgaaattaaatacaactgaatttcctaattaataattttt-tgttaattagtaatttgt 25851227  T
Q  139 tgtcaaagtgaaagtgtgtggtat 162  Q
    |||||||||||||  |||||||||    
T  25851228 tgtcaaagtgaaaacgtgtggtat 25851251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 44185675 - 44185811
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtttt 127  Q
    ||||||| ||||  ||||||||| | ||  |||||||||| |||| |||||| |||||| | |||||||  |  ||||   |||||||||||||| ||||    
T  44185675 taaattactaaaattatacaattattgtggtacttaaatacaaatattctcgtcatgaagttaaatatacatgaatttcttaattaatgatttttatttt 44185774  T
Q  128 aat--taatttgttgtcaaagtgaaagtgtgtggtat 162  Q
    | |  || |||||||||||||||||||||||||||||    
T  44185775 actactagtttgttgtcaaagtgaaagtgtgtggtat 44185811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 34733574 - 34733691
Alignment:
Q  43 atacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtttta--attaatttgttg 140  Q
    |||||||| ||||||||||||||||||||| |||||  ||||||||||||||||  |  |||||  |||||||||||||||||| |  | ||||||||||    
T  34733574 atacaattatcgtattacttaaataaaaat-ttctcatcatgaaataaaatatatctgaattttataattaatgatttttgtttgatcagtaatttgttg 34733672  T
Q  141 tcaaagtgaaagtgtgtgg 159  Q
    |||||||||||||||||||    
T  34733673 tcaaagtgaaagtgtgtgg 34733691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 41540979 - 41541090
Alignment:
Q  42 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtttta--attaatttgtt 139  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||| ||||| || |  |||| | ||||||||| || |||||||  | |||||||||    
T  41540979 tatacaattgttgtattacttaaataaaaatcttctcgtcatgaaattaaataaaactgaatttcctaattaatga-ttctgttttattagtaatttgtt 41541077  T
Q  140 gtcaaagtgaaag 152  Q
    |||||||||||||    
T  41541078 gtcaaagtgaaag 41541090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 10437975 - 10437846
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttc--tcgacatgaaataaaatataatttgattttccaattaatgatttttgtt 125  Q
    ||||||| ||||  ||||||||||||||||||||||||  |||| ||||  ||  ||||||||||||||||  | ||||||| ||||||||||||| |||    
T  10437975 taaattagtaaaattatacaattgtcgtattacttaaacgaaaaccttcaatcttcatgaaataaaatatatatggattttctaattaatgatttt-gtt 10437877  T
Q  126 ttaat--taatttgttgtcaaagtgaaagtg 154  Q
    | | |  ||||||||||||||||||||||||    
T  10437876 tgattagtaatttgttgtcaaagtgaaagtg 10437846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 19250626 - 19250710
Alignment:
Q  42 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 126  Q
    ||||||||| ||||||||||||||||||| ||||||||  ||||| |||||||||  | ||||| | ||||||||||||||||||    
T  19250626 tatacaattttcgtattacttaaataaaactcttctcgttatgaagtaaaatatatctggatttcctaattaatgatttttgttt 19250710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 36660543 - 36660674
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaat-aaaatataatttgattttccaat---taatgatttttg 123  Q
    ||||||||||||  |||||||||| | |||||| ||||||| ||| |||||| |||||||| ||||||||| | ||||| | |||   |||| |||||||    
T  36660543 taaattaataaaattatacaattgccatattacataaataagaattttctcgtcatgaaataaaaatataaatggatttcctaataactaataatttttg 36660642  T
Q  124 tttta-attaatttgttgtcaaagtgaaagtg 154  Q
    ||| | | ||||||||||||||||||||||||    
T  36660643 tttgatagtaatttgttgtcaaagtgaaagtg 36660674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 30653459 - 30653342
Alignment:
Q  46 caattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt--taattaatttgttgtca 143  Q
    |||||| |||||||||||||||||||||||| |  ||| |||| ||||| ||  ||| ||| | |||||||||||||||||  | | | |||| ||||||    
T  30653459 caattgacgtattacttaaataaaaatcttcacatcataaaatgaaatagaa-ctgaatttgctattaatgatttttgtttcattagtcattttttgtca 30653361  T
Q  144 aagtgaaagtgtgtggtat 162  Q
    |||||||||||||||||||    
T  30653360 aagtgaaagtgtgtggtat 30653342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 13612339 - 13612454
Alignment:
Q  42 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttttaattaatttgttgt 141  Q
    ||||||| ||| |||||||||||||| |||||| | |  ||||||||||| ||||||| ||||| | ||||||||| |||| || | | ||||||||||     
T  13612339 tatacaactgttgtattacttaaatataaatctccccatcatgaaataaagtataattggatttccaaattaatgaatttt-ttattactaatttgttga 13612437  T
Q  142 caaagtgaaagtgtgtg 158  Q
     ||||||||| ||||||    
T  13612438 taaagtgaaaatgtgtg 13612454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 9349594 - 9349656
Alignment:
Q  43 atacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattt 105  Q
    ||||||||||||||||| |||| |||||||||||||  | |||||| |||||||||| |||||    
T  9349594 atacaattgtcgtattagttaagtaaaaatcttctcatcgtgaaatcaaatataattggattt 9349656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 13083534 - 13083585
Alignment:
Q  109 aattaatgatttttgttttaattaatttgttgtcaaagtgaaagtgtgtggtat 162  Q
    |||||||||||||| |||  | ||||||||||||||||||||||||||||||||    
T  13083534 aattaatgatttttattt--agtaatttgttgtcaaagtgaaagtgtgtggtat 13083585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 9371211 - 9371347
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtttt 127  Q
    |||||| |||||  |||||||||||||||||  || || |||||| || ||  | |||||| |||||||||| |||||   ||||| | ||||||||||     
T  9371211 taaattgataaaattatacaattgtcgtattcattcaaaaaaaatattttcatcgtgaaatcaaatataattggatttcttaattattaatttttgtttg 9371310  T
Q  128 aat--taatttgttgtcaaagtgaaagtgtgtggtat 162  Q
    | |  |||||||||||||| |||||| ||| ||||||    
T  9371311 attagtaatttgttgtcaacgtgaaattgtatggtat 9371347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 33642109 - 33642207
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 126  Q
    ||||||||||||  ||||||||||| ||  ||||| || || |||||||||  ||||||||||||||||| | ||||||| ||||||||||||||||||    
T  33642109 taaattaataaaaatatacaattgttgtggtacttgaaaaataatcttctcttcatgaaataaaatataactggattttctaattaatgatttttgttt 33642207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 30649581 - 30649459
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtttt 127  Q
    ||||||| ||||  |||||||||||| || ||||||||||||||  |||| | ||||||||||||||||| | ||||||| |||||||| ||||| |||     
T  30649581 taaattagtaaaactatacaattgtcatagtacttaaataaaaaatttcttgtcatgaaataaaatataactcgattttctaattaatggtttttctttg 30649482  T
Q  128 aat--taatttgttgtcaaagtg 148  Q
    | |  ||||||||||| ||||||    
T  30649481 atttgtaatttgttgtgaaagtg 30649459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 13610627 - 13610725
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 126  Q
    ||||||||||||  ||||||||||| ||  ||||| || || |||||||||  ||||||||||||||||| |  |||||| ||||||||||||||||||    
T  13610627 taaattaataaaaatatacaattgttgtggtacttgaaaaataatcttctcttcatgaaataaaatataactgaattttctaattaatgatttttgttt 13610725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 7339281 - 7339400
Alignment:
Q  42 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt--taattaatttgtt 139  Q
    ||||||||||||||||||||||   |||||||||||   |||| ||||||||| || |  |||||| ||||||||||| ||||||  | | |||||||||    
T  7339281 tatacaattgtcgtattactta---aaaaatcttcttttcatggaataaaatacaactgaattttctaattaatgattgttgtttgattagtaatttgtt 7339377  T
Q  140 gtcaaagtgaaagtgtgtggtat 162  Q
    ||| |||||||| ||||||||||    
T  7339378 gtcgaagtgaaaatgtgtggtat 7339400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 29027825 - 29027727
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 126  Q
    ||||||| ||||  |||||||||||||| ||| |||||||||||  |||| |   |||| |||||||||| | ||||| | || |||||||||||||||    
T  29027825 taaattagtaaaattatacaattgtcgtcttaattaaataaaaaatttcttgtagtgaagtaaaatataactggatttcctaactaatgatttttgttt 29027727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 3482 - 3352
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtt-- 125  Q
    ||||||| ||||  |||||||| |||||| ||||||||||||||  |||||   | ||||||||| ||| || ||||||| |||||||| ||| ||||      
T  3482 taaattagtaaaattatacaatcgtcgtagtacttaaataaaaaaattctcataaagaaataaaagatagttggattttctaattaatgttttgtgtttg 3383  T
Q  126 -ttaattaatttgttgtcaaagtgaaagtgt 155  Q
     ||| | |||||||||| |||||||||||||    
T  3382 attattaaatttgttgttaaagtgaaagtgt 3352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 6638 - 6702
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaa 92  Q
    ||||||| ||||  ||||| | || ||||||||||||||||||| ||||||| ||||||||||||    
T  6638 taaattagtaaaattatacgactgccgtattacttaaataaaaaacttctcgtcatgaaataaaa 6702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 33332 - 33235
Alignment:
Q  67 aaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtttta--attaatttgttgtcaaagtgaaagtgtgtggtat 162  Q
    ||||||||||| | |||| |||||||||||| | ||||| | | |||||||| ||| |||||  | ||||||| |||||||||||||| |||| ||||    
T  33332 aaaaatcttcttgtcatggaataaaatataaatggatttcctagttaatgatcttttttttattagtaatttgatgtcaaagtgaaagcgtgtagtat 33235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1797 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1797
Description:

Target: scaffold1797; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 833 - 902
Alignment:
Q  28 taaattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataa 97  Q
    ||||||||||||  ||||||||||| || |||| | || || |||||||||  |||||||||||||||||    
T  833 taaattaataaaattatacaattgttgtgttacatgaaaaataatcttctcttcatgaaataaaatataa 902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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