View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6574_low_15 (Length: 251)
Name: NF6574_low_15
Description: NF6574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6574_low_15 |
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| [»] chr6 (9 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 11169704 - 11169466
Alignment:
| Q |
13 |
aatatgagggaattcataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
11169704 |
aatatgagggaattcataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggcaaacatcaataacgcaactgatttggtctttaagtggc |
11169605 |
T |
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| Q |
113 |
ttgacgttaatgtggttgcagaacaacaagattttgaatattatagtagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11169604 |
ttgacgttaatgtggttgcagaacaacaagattttgaacattatagtagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatga |
11169505 |
T |
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| Q |
213 |
gggacattgtgtgcaagaaggtactatggttggacatcc |
251 |
Q |
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| T |
11169504 |
gggacattgtgtgcaagaaggtactatggttggacatcc |
11169466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 11275088 - 11274872
Alignment:
| Q |
13 |
aatatgagggaattcataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggc |
112 |
Q |
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||||||||||| |||||||||||||| ||||||| ||||||| |||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
11275088 |
aatatgagggatttcataaatgatcccgatattatctcgaagctttcattaaaagaaaaggaaaacatcaataatgcaactgatttggtctttaagtggc |
11274989 |
T |
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| Q |
113 |
ttgacgttaatgtggttgcagaacaacaagattttgaatattatagtagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatga |
212 |
Q |
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| T |
11274988 |
ttgacgttaatgtggttgcagaacaacaagattttgaatgttataggagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatga |
11274889 |
T |
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| Q |
213 |
gggacattgtgtgcaag |
229 |
Q |
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| T |
11274888 |
gggacatggtgtgcaag |
11274872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 11208526 - 11208288
Alignment:
| Q |
13 |
aatatgagggaattcataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggc |
112 |
Q |
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||||||||||| | |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |
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| T |
11208526 |
aatatgagggattccataaatgatccagaagttagctcgaagctttcgtcaaaagaaaaggaaaagatcaataacgcagttgatttggtcttcatgtggc |
11208427 |
T |
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| Q |
113 |
ttgacgttaatgtggttgcagaacaacaagattttgaatattatagtagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatga |
212 |
Q |
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| T |
11208426 |
ttgacgctaataaggtagtagaacaacaagattttgagtgttataggagcattctttcaagtgtgtttgatccaattattttgaagatgataaaggatga |
11208327 |
T |
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| Q |
213 |
gggacattgtgtgcaagaaggtactatggttggacatcc |
251 |
Q |
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||| ||| ||||| ||||||||||||||||||| ||||| |
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| T |
11208326 |
ggggcatggtgtggaagaaggtactatggttgggcatcc |
11208288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 245
Target Start/End: Complemental strand, 11155410 - 11155193
Alignment:
| Q |
28 |
ataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggcttgacgttaatgtgg |
127 |
Q |
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||||||||| ||||||||| | || | ||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| || ||||| ||| |
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| T |
11155410 |
ataaatgataaggatattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataatgcacttgatttggtctttacgtggctcgatgttaacgtga |
11155311 |
T |
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| Q |
128 |
ttgcagaacaacaagattttgaatattatagtagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacattgtgtgca |
227 |
Q |
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|||| |||||| || | ||||| ||||||| ||||||||||||||||| |||||| || || | | |||| |||||| |||||| | ||| ||||||| |
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| T |
11155310 |
ttgcggaacaagaacaatttgagtattatacgagcattctttcaagtgtatttgatgcagttatagtgaagaagataaatgatgagaggcatggtgtgca |
11155211 |
T |
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| Q |
228 |
agaaggtactatggttgg |
245 |
Q |
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||| |||| ||||||||| |
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| T |
11155210 |
agagggtattatggttgg |
11155193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 11165477 - 11165352
Alignment:
| Q |
13 |
aatatgagggaattcataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggc |
112 |
Q |
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||||||||||| | |||||||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
11165477 |
aatatgagggattccataaatgatccagatgttagctcgaagctttcgtcaaaagaaaaggaaaatatcaataacgcagttgatttggtctttaagtggc |
11165378 |
T |
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| Q |
113 |
ttgacgttaatgtggttgcagaacaa |
138 |
Q |
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|||| | |||| ||||||||||||| |
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| T |
11165377 |
ttgaagataataaggttgcagaacaa |
11165352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 245
Target Start/End: Complemental strand, 11195829 - 11195640
Alignment:
| Q |
56 |
tttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggcttgacgttaatgtggttgcagaacaacaagattttgaatatta |
155 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||| | |||||| || ||||| |||||||| |||||| || | ||||| ||||| |
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| T |
11195829 |
tttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttcatgtggctcgatgttaacgtggttgcggaacaagaacaatttgagtatta |
11195730 |
T |
|
| Q |
156 |
tagtagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacattgtgtgcaagaaggtactatggttgg |
245 |
Q |
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| T |
11195729 |
tacgagcattctttcaagtgtatttgatgcagttatagtgaagaagataaatgatgagaggcatggtgtgcaagagggtattatggttgg |
11195640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 11242049 - 11242206
Alignment:
| Q |
27 |
cataaatgatccggatattagctcgaagatttcgtcaaaagaaaa--ggaaaagatcaataacgcaactgatttggtctttaagtggcttgacgttaatg |
124 |
Q |
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|||||||||| ||||||| |||||||| |||||| ||| ||||| ||||||||| ||||| |||| | |||||||||| | |||||||| ||||||| |
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| T |
11242049 |
cataaatgataaggatatttgctcgaagctttcgtaaaacgaaaaaaggaaaagattaataaagcaatt-atttggtcttcacatggcttgatgttaatg |
11242147 |
T |
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| Q |
125 |
tggttgcagaacaacaagattttgaatattatagtagcattctttcaagtgtgtttgat |
183 |
Q |
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| T |
11242148 |
tggttgaagaacaacgagattttgaatgttataggagcattctttcaagtgtgtttgat |
11242206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 11132105 - 11131954
Alignment:
| Q |
51 |
gaagatttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggcttgacgttaatgtggttgcagaacaacaagattttgaa |
150 |
Q |
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|||| |||||| | |||| |||||| |||| ||||| ||| ||||| |||||| ||||||||||| |||||| ||| ||||||||| |||||||| |
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| T |
11132105 |
gaagctttcgttagaagacaaggaagtgatcgataacacaattgattcggtcttactgtggcttgacgacaatgtgattgtagaacaacatgattttgag |
11132006 |
T |
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| Q |
151 |
tattatagtagcattctttcaagtgtgtttgatccaattgttataaagatga |
202 |
Q |
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||||||| | | | |||||||||||||||||||| ||| || | ||||||| |
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| T |
11132005 |
tattatacgaacttactttcaagtgtgtttgatcccattattttgaagatga |
11131954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 11315911 - 11315976
Alignment:
| Q |
166 |
ctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacattgtgtgcaagaa |
231 |
Q |
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|||||||||||||||||| |||| || | |||| |||||||||||||| ||| ||||||||||| |
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| T |
11315911 |
ctttcaagtgtgtttgatggaattattgtgaagaagataaaggatgaggagcatggtgtgcaagaa |
11315976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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