View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6574_low_16 (Length: 242)
Name: NF6574_low_16
Description: NF6574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6574_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 10216262 - 10216438
Alignment:
| Q |
1 |
gatacatctggctgtatgaaactcctggaccttgtgatgcatattcccttagccaccattcctttaatatctttcagactcaacatcttcaacatttcac |
100 |
Q |
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| T |
10216262 |
gatacatctggctgtatgaaactcctggaccttgtgatgcatattcccttagccaccattcctttaatatctttcagactcaacatcttcaacatttcac |
10216361 |
T |
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| Q |
101 |
tggaaaaatcattaggagacaaagatggtgatgatagaatggtgaaggatgggttcaggatacgcagataaataaca |
177 |
Q |
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| T |
10216362 |
tggaaaaatcattaggagacaaagatggtgatgatagaatggtgaaggatgggttcaggataagcagataaataaca |
10216438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 10210469 - 10210593
Alignment:
| Q |
1 |
gatacatctggctgtatgaaactcctggaccttgtgatgcatattcccttagccaccattcctttaatatctttcagactcaacatcttcaacatttcac |
100 |
Q |
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| T |
10210469 |
gatacatctagttgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctgactcaacatctgcagcctttcac |
10210568 |
T |
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| Q |
101 |
tggaaaaatcattaggagacaaaga |
125 |
Q |
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| T |
10210569 |
tggatatatctttaggagacaaaga |
10210593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 10108665 - 10108510
Alignment:
| Q |
29 |
accttgtgatgcatattcccttagccaccattcc-tttaatatctttcagactcaacatcttcaacatttcactggaaaaatcattaggagacaaagatg |
127 |
Q |
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| T |
10108665 |
accttgtgatgcatattcccttagccaccattccttttaatatctctctgactcaacatctgcagcctttcactggaaatatctttaggagacaaagacg |
10108566 |
T |
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| Q |
128 |
gt------gatgatagaatggtgaaggatgggttcaggatacgcagataaataaca |
177 |
Q |
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| T |
10108565 |
gtgtcggcgatggtggaatcgtgaagaatgggttcaggaaaagcagataaataaca |
10108510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 10216524 - 10216589
Alignment:
| Q |
177 |
acaaaagctattaatactatgtcaatggtaatatattaagtattcaccaaaacataggagaattca |
242 |
Q |
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| T |
10216524 |
acaaaagctattaatactatgtcaatggtaatatattaagtattcaccaaaacataggagaattca |
10216589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 11048419 - 11048471
Alignment:
| Q |
190 |
atactatgtcaatggtaatatattaagtattcaccaaaacataggagaattca |
242 |
Q |
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| T |
11048419 |
atactatgtcaatggtaatatgttaagtattcaccaaaacataggagaattca |
11048471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 9683111 - 9683233
Alignment:
| Q |
30 |
ccttgtgatgcatattcccttagccaccattcctttaatatctttcagactcaacatcttcaacatttcactggaaaaatcattaggagacaaagatggt |
129 |
Q |
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| T |
9683111 |
ccttgtgatgcatattcccctagcaaccattcctttaatgtctacatgactcaacatctggagc---------gaaaaatctttaggagacaaagacgga |
9683201 |
T |
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| Q |
130 |
gatgatagaatggtgaaggatgggttcaggat |
161 |
Q |
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| T |
9683202 |
gttgatggaattgtgaaggatgggtccaggat |
9683233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 10210615 - 10210655
Alignment:
| Q |
137 |
gaatggtgaaggatgggttcaggatacgcagataaataaca |
177 |
Q |
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| T |
10210615 |
gaatcgtgaagaatgggttcaggataagcagataaataaca |
10210655 |
T |
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