View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6574_low_18 (Length: 205)

Name: NF6574_low_18
Description: NF6574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6574_low_18
NF6574_low_18
[»] chr1 (2 HSPs)
chr1 (19-187)||(48923734-48923902)
chr1 (41-174)||(48912352-48912484)
[»] chr4 (2 HSPs)
chr4 (86-147)||(28656068-28656129)
chr4 (155-187)||(28656199-28656231)
[»] chr3 (4 HSPs)
chr3 (86-147)||(31281488-31281549)
chr3 (86-147)||(55425154-55425215)
chr3 (155-187)||(31281619-31281651)
chr3 (155-188)||(55425063-55425096)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 48923734 - 48923902
Alignment:
Q  19 tatttaaagctaaatatgtatacaaattaacttgttcttgtaactgggggacaatgtcaattgcaggagtaactttatggagaaaatttcgacttaaaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48923734 tatttaaagctaaatatgtatacaaattaacttgttcttgtaactgggggacaatgtcaattgcaggagtaactttatggagaaaatttcgacttaaaaa 48923833  T
Q  119 atgttcaactgcagaataagaaacataaaggttatctacatgtttatacatatgcatctacaaacacat 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48923834 atgttcaactgcagaataagaaacataaaggttatctacatgtttatacatatgcatctacaaacacat 48923902  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 48912352 - 48912484
Alignment:
Q  41 caaattaacttgttcttgtaactgggggacaatgtcaattgcaggagtaactttatggagaaaatttcgacttaaaaaatgttcaactgcagaataagaa 140  Q
    |||||||||||||||||||||||||| ||| || || || |  | || |||||||||| || |||||| | |||| ||| ||||||||||||||||||||    
T  48912352 caaattaacttgttcttgtaactgggagactatatccatcgtcgaagaaactttatggcgataatttcaaattaacaaa-gttcaactgcagaataagaa 48912450  T
Q  141 acataaaggttatctacatgtttatacatatgca 174  Q
    |||||||||||||| | | |||||||||||||||    
T  48912451 acataaaggttatcgatacgtttatacatatgca 48912484  T

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Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 28656068 - 28656129
Alignment:
Q  86 agtaactttatggagaaaatttcgacttaaaaaatgttcaactgcagaataagaaacataaa 147  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||    
T  28656068 agtaactttatggagaatatttcgacttaaaaaaatttcaactgcagaataagaaacataaa 28656129  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 28656199 - 28656231
Alignment:
Q  155 tacatgtttatacatatgcatctacaaacacat 187  Q
    |||||||||||||||||||||||||||||||||    
T  28656199 tacatgtttatacatatgcatctacaaacacat 28656231  T

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Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 31281488 - 31281549
Alignment:
Q  86 agtaactttatggagaaaatttcgacttaaaaaatgttcaactgcagaataagaaacataaa 147  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||    
T  31281488 agtaactttatggagaatatttcgacttaaaaaaatttcaactgcagaataagaaacataaa 31281549  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 55425215 - 55425154
Alignment:
Q  86 agtaactttatggagaaaatttcgacttaaaaaatgttcaactgcagaataagaaacataaa 147  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||    
T  55425215 agtaactttatggagaatatttcgacttaaaaaaatttcaactgcagaataagaaacataaa 55425154  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 31281619 - 31281651
Alignment:
Q  155 tacatgtttatacatatgcatctacaaacacat 187  Q
    |||||||||||||||||||||||||||||||||    
T  31281619 tacatgtttatacatatgcatctacaaacacat 31281651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 55425096 - 55425063
Alignment:
Q  155 tacatgtttatacatatgcatctacaaacacatg 188  Q
    ||||| ||||||||||||||||||||||||||||    
T  55425096 tacatatttatacatatgcatctacaaacacatg 55425063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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