View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6574_low_2 (Length: 674)

Name: NF6574_low_2
Description: NF6574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6574_low_2
NF6574_low_2
[»] chr7 (14 HSPs)
chr7 (1-376)||(7907026-7907407)
chr7 (392-606)||(7907458-7907673)
chr7 (5-148)||(7896634-7896777)
chr7 (244-376)||(7897625-7897755)
chr7 (396-555)||(45837816-45837978)
chr7 (392-557)||(32786794-32786962)
chr7 (413-484)||(5528294-5528365)
chr7 (427-554)||(39837393-39837522)
chr7 (18-81)||(7896545-7896608)
chr7 (40-89)||(7896453-7896502)
chr7 (408-550)||(2033631-2033775)
chr7 (399-555)||(28337215-28337374)
chr7 (175-215)||(7896805-7896844)
chr7 (532-564)||(38652621-38652653)
[»] chr4 (12 HSPs)
chr4 (392-555)||(50297628-50297794)
chr4 (392-553)||(54997695-54997860)
chr4 (413-558)||(32895468-32895615)
chr4 (416-555)||(31690582-31690722)
chr4 (392-473)||(36989837-36989919)
chr4 (408-555)||(28675676-28675825)
chr4 (392-504)||(27918380-27918493)
chr4 (392-554)||(14138979-14139144)
chr4 (392-563)||(22019393-22019567)
chr4 (443-555)||(29508720-29508834)
chr4 (464-555)||(14603008-14603101)
chr4 (520-555)||(41460529-41460565)
[»] scaffold0542 (1 HSPs)
scaffold0542 (392-555)||(4519-4684)
[»] chr1 (7 HSPs)
chr1 (392-504)||(4658677-4658789)
chr1 (392-554)||(5799731-5799896)
chr1 (392-529)||(31262562-31262702)
chr1 (392-558)||(41884607-41884776)
chr1 (392-473)||(1035572-1035654)
chr1 (461-553)||(8644680-8644773)
chr1 (423-484)||(48149250-48149311)
[»] chr2 (10 HSPs)
chr2 (392-546)||(20061055-20061212)
chr2 (468-549)||(1705047-1705130)
chr2 (392-555)||(14275760-14275925)
chr2 (392-546)||(39420193-39420350)
chr2 (454-529)||(42184863-42184939)
chr2 (392-473)||(2889110-2889192)
chr2 (488-555)||(13242226-13242295)
chr2 (443-552)||(36528403-36528514)
chr2 (520-557)||(44721342-44721380)
chr2 (427-530)||(36285005-36285109)
[»] chr8 (6 HSPs)
chr8 (392-529)||(31313311-31313450)
chr8 (392-555)||(40505246-40505411)
chr8 (520-558)||(38869903-38869942)
chr8 (392-555)||(6530310-6530476)
chr8 (392-472)||(5493362-5493443)
chr8 (488-555)||(15067673-15067742)
[»] chr6 (2 HSPs)
chr6 (413-496)||(10960554-10960637)
chr6 (520-555)||(154333-154369)
[»] chr3 (8 HSPs)
chr3 (413-528)||(37919184-37919299)
chr3 (425-562)||(54787783-54787922)
chr3 (413-525)||(48192590-48192702)
chr3 (406-473)||(4539875-4539942)
chr3 (413-554)||(13637916-13638059)
chr3 (392-558)||(33791483-33791652)
chr3 (520-555)||(24355448-24355484)
chr3 (530-558)||(28945977-28946005)
[»] chr5 (3 HSPs)
chr5 (395-473)||(41144656-41144735)
chr5 (509-556)||(29429729-29429777)
chr5 (520-559)||(42655892-42655932)
[»] scaffold0005 (1 HSPs)
scaffold0005 (464-555)||(214277-214370)


Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 7907026 - 7907407
Alignment:
Q  1 catgagctatggaacaactgcggatatgcctcttgatcgaagtagcttacttggaagacaaaatgatgtctttgcaaggtgcgaaattctgattcctgat 100  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7907026 catgagctatggaacaactgctgatatgcctcttggtcgaagtagcttacttggaagacaaaatgatgtctttgcaaggtgcgaaattctgattcctgat 7907125  T
Q  101 cgtacga----gctcttagctcttt-aagtttcatgtatctagtctgatttatgatttgtaaatttgcagtaccttgtgtaacatctaataatcttcagt 195  Q
    |||| ||    ||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7907126 cgtatgaatgagctcttatctcttttaagtttcatgtatctagtctgatttgtgatttgtaaatttgcagtaccttgtgtaacatctaataatcttcagt 7907225  T
Q  196 taaatgtttgcattttgttccacgaaatttgcagtaccttgtttcatcatatgcatttggattactcagttgtgtattctgtgcatgcagta-agtctat 294  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7907226 gaaatgtttgcattttgttccacgaaatttgcagtaccttgtttcatcatatgcatttggattactcagttgtgtattctgtgcatgcagtatagtctat 7907325  T
Q  295 gtagctgcaaaatgcaattaattagaaagggggattttatgaagtcagttttaccggttgtcctaagaaaattatatatata 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||    
T  7907326 gtagctgcaaaatgcaattaattagaaagggggattttatgaagtcagttttatcagttggcctaagaaaattatatatata 7907407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 392 - 606
Target Start/End: Original strand, 7907458 - 7907673
Alignment:
Q  392 taacttgtgccctcaaggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtatttt 491  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||| ||||||||||||    
T  7907458 taacttgtgccctcaaggcacatgttaagatactcattatagaaatagacatatcaaaaaccatgcattcaacttcttaaaaattgttatattgtatttt 7907557  T
Q  492 ccaatgcaaaattacttttttaggttggttaacatgtg-cttaagggcacaagttaacatgacccatattttttcagggaggaagaaacctacttcttac 590  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7907558 ccaatgcaaaattacttttttaggttgcttaacatgtgccttaagggcacaagttaacatgacccatattttttcagtgaggaagaaacctacttcttac 7907657  T
Q  591 ttatataacccgtgaa 606  Q
    |||  |||||||||||    
T  7907658 ttaattaacccgtgaa 7907673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 7896634 - 7896777
Alignment:
Q  5 agctatggaacaactgcggatatgcctcttgatcgaagtagcttacttggaagacaaaatgatgtctttgcaaggtgcgaaattctgattcctgatcgta 104  Q
    ||||||||||||||||  ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| | ||    
T  7896634 agctatggaacaactgttgatatgcctcttggtcgaagtagcttacatggaagaccaaatgatgtctttgcaaggtgcgaaattctgattcctgaactta 7896733  T
Q  105 cgagctcttagctctttaagtttcatgtatctagtctgatttat 148  Q
     |||||||||||||| ||||||||||||||||||||||||||||    
T  7896734 tgagctcttagctctctaagtttcatgtatctagtctgatttat 7896777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 244 - 376
Target Start/End: Original strand, 7897625 - 7897755
Alignment:
Q  244 atatgcatttggattactcagttgtgtattctgtgcatgcagtaagtctatgtagctgcaaaatgcaattaattagaaagggggattttatgaagtcagt 343  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7897625 atatgcatttggattactcagttgtgtattctgtgcatgcagta-gtctatgtagctgcaaaatgcaattaattagaaagggggattttatgaagtcagt 7897723  T
Q  344 tttaccggttgtcctaagaaaattatatatata 376  Q
    | || | ||||||| ||| ||||||||||||||    
T  7897724 tctatcagttgtccgaag-aaattatatatata 7897755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 396 - 555
Target Start/End: Original strand, 45837816 - 45837978
Alignment:
Q  396 ttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttcca 494  Q
    |||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||  |||||||| |||||| |||||| |||||||||||| |||||||    
T  45837816 ttgtgcccacaagggcacatgttaagatactcattatagaaatacacatatcaaacggcgtgcattcaacttattaaaagttgtcatattgtgttttcca 45837915  T
Q  495 atgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 555  Q
    ||||||| || || ||||||| ||| |||||||||| | ||||||||||||||| ||||||||    
T  45837916 atgcaaagttgctctttttagattgcttaacatgtgccctaagggcacaagttagcatgaccc 45837978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 392 - 557
Target Start/End: Original strand, 32786794 - 32786962
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 490  Q
    |||||||||||||||||| || ||||||||  |||||||||| ||||| || ||||||||  ||||||| ||||||||||||| ||   ||||| | |||    
T  32786794 taacttgtgccctcaagggcacatgttaaggaactcattatataaatatacgtatcaaaagtcgtgcattcaacttcttaaaagttaaaatattatgttt 32786893  T
Q  491 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgacccat 557  Q
    |||||| |||| || || ||||  ||||  |||||||||| | | ||||||||||||| ||||||||||    
T  32786894 tccaatacaaagttgctcttttcgggttccttaacatgtgcccttagggcacaagttagcatgacccat 32786962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 413 - 484
Target Start/End: Original strand, 5528294 - 5528365
Alignment:
Q  413 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatatt 484  Q
    |||||||||| ||||||||||||||| |||||| ||||| ||| ||| |||||||||||||  |||||||||    
T  5528294 atgttaagattctcattataaaaatacacatattaaaaatcgtacattcaacttcttaaaagctgtcatatt 5528365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 554
Target Start/End: Complemental strand, 39837522 - 39837393
Alignment:
Q  427 attataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaaca 525  Q
    |||||| ||||| || ||||||||  ||||||| ||||||||||||| ||| | |||| |||||| || |||||| || || ||||||| ||  ||||||    
T  39837522 attatagaaatacacgtatcaaaagtcgtgcattcaacttcttaaaagttgacctattatatttttcagtgcaaagttgctatttttagattatttaaca 39837423  T
Q  526 tgtg-cttaagggcacaagttaacatgacc 554  Q
    | || | |||||||||||||||||||||||    
T  39837422 tatgccctaagggcacaagttaacatgacc 39837393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 7896545 - 7896608
Alignment:
Q  18 ctgcggatatgcctcttgatcgaagtagcttacttggaagacaaaatgatgtctttgcaaggtg 81  Q
    |||| ||||||||||||| ||||||||||||||| ||||  | |||||||||||| ||||||||    
T  7896545 ctgctgatatgcctcttggtcgaagtagcttactgggaaagccaaatgatgtcttcgcaaggtg 7896608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 7896453 - 7896502
Alignment:
Q  40 aagtagcttacttggaagacaaaatgatgtctttgcaaggtgcgaaattc 89  Q
    |||||||||||| |||| || |||||||||||||||||||||| ||||||    
T  7896453 aagtagcttactaggaaaaccaaatgatgtctttgcaaggtgcaaaattc 7896502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 550
Target Start/End: Original strand, 2033631 - 2033775
Alignment:
Q  408 ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact 507  Q
    |||| |||||||||  || |||||| ||||| |  ||| |||||  |||||| |||||| |||||| |||  || || |||||| ||||||||||||| |    
T  2033631 ggcacatgttaagaaccttattatagaaatacatttataaaaaattgtgcattcaactttttaaaagttgatatgttatatttttcaatgcaaaattatt 2033730  T
Q  508 tttttag-gttggttaacatgtg-cttaagggcacaagttaacat 550  Q
    ||||| | |||| |||||||||| ||||| |||| ||||||||||    
T  2033731 ttttttgagttgtttaacatgtgccttaaaggcataagttaacat 2033775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 555
Target Start/End: Original strand, 28337215 - 28337374
Alignment:
Q  399 tgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatg 497  Q
    ||||||||||| || ||||||||| |||||||||| ||||| |  ||| ||||| ||||||  ||||||||||||| ||   ||| | |||||| |||||    
T  28337215 tgccctcaagggcacatgttaagaaactcattatagaaatatatgtataaaaaatcgtgcaatcaacttcttaaaagttaaaatactatatttttcaatg 28337314  T
Q  498 caaaattact-tttttaggttggttaacatgt-gcttaagggcacaagttaacatgaccc 555  Q
    |||| || || ||||||| ||  |||||||||  ||| |||||| || ||||||||||||    
T  28337315 caaagttgctctttttagattccttaacatgtacctttagggcataatttaacatgaccc 28337374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 7896805 - 7896844
Alignment:
Q  175 taacatctaataatcttcagttaaatgtttgcattttgttc 215  Q
    ||||||||||||| ||||||||||||| |||||||||||||    
T  7896805 taacatctaataaacttcagttaaatg-ttgcattttgttc 7896844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 564
Target Start/End: Complemental strand, 38652653 - 38652621
Alignment:
Q  532 taagggcacaagttaacatgacccatatttttt 564  Q
    ||||||||||||||||||||||||| |||||||    
T  38652653 taagggcacaagttaacatgacccaaatttttt 38652621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 7e-51; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 392 - 555
Target Start/End: Complemental strand, 50297794 - 50297628
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 490  Q
    |||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| |||||||||||| |||    
T  50297794 taacttgtgccctcaagggcacatgttaagatactcattatagaaatacacatatcaaaaggcgtgcattcaacttcttaaaagttgtcatattgtgttt 50297695  T
Q  491 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 555  Q
    ||||||||||||||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||    
T  50297694 tccaatgcaaaattactcttttttggttgcttaacatgtgccctaagggcacaagttaacatgaccc 50297628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 392 - 553
Target Start/End: Complemental strand, 54997860 - 54997695
Alignment:
Q  392 taacttgtgccctcaa-ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattg-tatt 489  Q
    ||||||||||| |||| |||| |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| |||| ||||||   ||    
T  54997860 taacttgtgccatcaatggcacatgttaagatactcattatagaaataaacatatcaaaatgcgtgcattcaacttcttaaaagttgtaatattgcgttt 54997761  T
Q  490 ttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgac 553  Q
    ||||||||||||||| || ||||||||||| |||||||||| | ||| | ||||||||||||||||    
T  54997760 ttccaatgcaaaattgctctttttaggttgcttaacatgtgccctaatgacacaagttaacatgac 54997695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 413 - 558
Target Start/End: Complemental strand, 32895615 - 32895468
Alignment:
Q  413 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttt 511  Q
    ||||||| ||| |||||||||||||| |||||| ||||  |||| ||  ||||| |||||| |||||||||||||||||| |||||||||||| | ||||    
T  32895615 atgttaaaatattcattataaaaatacacatattaaaagacgtgtatttaactttttaaaagttgtcatattgtattttctaatgcaaaattattatttt 32895516  T
Q  512 taggttggttaacatgtgct-taagggcacaagttaacatgacccata 558  Q
    || |||| |||||||||||| ||||   |||||||||||| |||||||    
T  32895515 taagttgtttaacatgtgctctaagaatacaagttaacataacccata 32895468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 416 - 555
Target Start/End: Original strand, 31690582 - 31690722
Alignment:
Q  416 ttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttag 514  Q
    |||||||||| |||||| ||||| |||||| |||| | |||||| || |||||||||| |||||||||||| ||||  |||||||||||  | |||||||    
T  31690582 ttaagatacttattatagaaatacacatattaaaatgtgtgcattcagcttcttaaaagttgtcatattgtgtttt-taatgcaaaattgttctttttag 31690680  T
Q  515 gttggttaacatg-tgcttaagggcacaagttaacatgaccc 555  Q
     ||| |||||||| | ||||||||||||||||| ||||||||    
T  31690681 attgcttaacatgttccttaagggcacaagttagcatgaccc 31690722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 392 - 473
Target Start/End: Original strand, 36989837 - 36989919
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 473  Q
    ||||||||| |||||||| || || |||||| |||||||||||||||| |||||| ||||  ||||||| |||||||||||||    
T  36989837 taacttgtgtcctcaagggcacatattaagaaactcattataaaaatatacatattaaaagtcgtgcattcaacttcttaaaa 36989919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 408 - 555
Target Start/End: Complemental strand, 28675825 - 28675676
Alignment:
Q  408 ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact 507  Q
    |||| ||||||||  | |||||||| ||||| |||||||||||    ||||| |||||  |||||| | |  ||||| | ||||| ||||||||||| ||    
T  28675825 ggcacatgttaaggaagtcattatagaaatatacatatcaaaatttttgcattcaactgtttaaaagtcgatatattatgttttctaatgcaaaattgct 28675726  T
Q  508 ttt-ttaggttggttaacatgtgct-taagggcacaagttaacatgaccc 555  Q
     || |||||||| |||||||||||  ||||||||||||||||||||||||    
T  28675725 cttattaggttgcttaacatgtgccctaagggcacaagttaacatgaccc 28675676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 504
Target Start/End: Complemental strand, 27918493 - 27918380
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 490  Q
    |||||||||||||||||| || ||||||||  |||| ||||| ||||| |  ||||||||  |||||||  |||||||||||| ||   ||||| |||||    
T  27918493 taacttgtgccctcaaggacacatgttaaggaactcgttatagaaatatatgtatcaaaagtcgtgcattaaacttcttaaaagttaaaatattatattt 27918394  T
Q  491 tccaatgcaaaatt 504  Q
    | ||||||||||||    
T  27918393 ttcaatgcaaaatt 27918380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 554
Target Start/End: Original strand, 14138979 - 14139144
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 490  Q
    ||||||||||| |||||| || |||||||   || | ||||| ||||| || ||||||||| |||| |  ||| ||||||||| ||   ||||| |||||    
T  14138979 taacttgtgccttcaagggcacatgttaatgaaccctttatagaaatatacgtatcaaaaatcgtgtagtcaatttcttaaaagttaaaatattatattt 14139078  T
Q  491 tccaatgcaaaattactttttta-ggttggttaacatgtg--cttaagggcacaagttaacatgacc 554  Q
    |||||| || ||||||||||||| ||||  ||||||||||  ||||| | |||||||||||||||||    
T  14139079 tccaatacataattacttttttagggttccttaacatgtgcccttaa-gacacaagttaacatgacc 14139144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 563
Target Start/End: Original strand, 22019393 - 22019567
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 490  Q
    |||||||||||||||||| || |||||||   |||||||||| ||||| |   || ||||| ||| ||| |||||||| ||||||     |||  |||||    
T  22019393 taacttgtgccctcaaggacacatgttaaagaactcattatagaaatatatgcattaaaaatcgtacattcaacttctaaaaaatgaaactatcatattt 22019492  T
Q  491 tccaatgcaaaattacttttttagg-ttggttaacatgtgct-taagggcacaagttaacatgacccatattttt 563  Q
    ||||||| |||||| |  |||| || ||  |||||||||||  | ||||||||||||||||||||||||||||||    
T  22019493 tccaatgtaaaattgcccttttcgggtttcttaacatgtgcccttagggcacaagttaacatgacccatattttt 22019567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 443 - 555
Target Start/End: Original strand, 29508720 - 29508834
Alignment:
Q  443 tatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcac 540  Q
    ||||||||  |||| || ||||||||||||| ||   ||||| | ||||||||||||||||| || ||||| ||||  |||||||||| | | |||||||    
T  29508720 tatcaaaagtcgtgtattcaacttcttaaaagtttaaatattatgttttccaatgcaaaattgctctttttgggttccttaacatgtgcccttagggcac 29508819  T
Q  541 aagttaacatgaccc 555  Q
    ||||||||| |||||    
T  29508820 aagttaacacgaccc 29508834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 555
Target Start/End: Complemental strand, 14603101 - 14603008
Alignment:
Q  464 cttcttaaaaattgtcatattgtattttccaatgcaaaattac-ttttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 555  Q
    ||||||||||||||  ||||| |||||| |||| ||||||| | |||||||| ||| |||||||||| | |||| |||||| ||||||| ||||    
T  14603101 cttcttaaaaattgatatattatatttttcaatacaaaattgctttttttagattgtttaacatgtgccataagagcacaaattaacataaccc 14603008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 555
Target Start/End: Complemental strand, 41460565 - 41460529
Alignment:
Q  520 ttaacatgtgct-taagggcacaagttaacatgaccc 555  Q
    |||||||||||| ||||||||||||||||||||||||    
T  41460565 ttaacatgtgctctaagggcacaagttaacatgaccc 41460529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 392 - 555
Target Start/End: Original strand, 4519 - 4684
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 490  Q
    |||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||| | |||    
T  4519 taacttgtgccctcaaggacacatgttaagatactcattatagaaatatacatatcaaaatgcgtgcattcaacttcttaaaaattgtcatattat-ttt 4617  T
Q  491 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 555  Q
    | |||||  ||||| || ||||||||||| |||| ||||| ||| | | ||||||||||||||||||    
T  4618 ttcaatgtgaaattgctctttttaggttgcttaatatgtgcctttatgacacaagttaacatgaccc 4684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 392 - 504
Target Start/End: Original strand, 4658677 - 4658789
Alignment:
Q  392 taacttgtgccctcaaggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtatttt 491  Q
    ||||||| ||| |||||||| ||||||||||||| |||||||||||| |||||| |||| | |||||| |||||||||||||||||||||||||| ||||    
T  4658677 taacttgagccttcaaggcacatgttaagatacttattataaaaatacacatattaaaaggtgtgcattcaacttcttaaaaattgtcatattgtgtttt 4658776  T
Q  492 ccaatgcaaaatt 504  Q
    || ||| ||||||    
T  4658777 ccgatgtaaaatt 4658789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 392 - 554
Target Start/End: Complemental strand, 5799896 - 5799731
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 490  Q
    |||||||||||||||||| || ||||||||  | | |||||||||||| |||||||||||   |||||| ||||||||||||  ||| ||||||   |||    
T  5799896 taacttgtgccctcaaggacatatgttaaggaagttattataaaaatatacatatcaaaagttgtgcattcaacttcttaaaggttgacatattacgttt 5799797  T
Q  491 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgacc 554  Q
    | |||||||||| | || ||||||||||| |||||||||| | ||||||||||||||| |||||||    
T  5799796 ttcaatgcaaaactgctctttttaggttgtttaacatgtgccataagggcacaagttagcatgacc 5799731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 392 - 529
Target Start/End: Original strand, 31262562 - 31262702
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaataga-catatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtatt 489  Q
    |||||||| ||||||||| || || |||||| |||||||||| ||||| | |||||||||||  |||||| ||||||||||||| ||| |||||| | ||    
T  31262562 taacttgtaccctcaagggcatatattaagaaactcattatagaaatataacatatcaaaaattgtgcattcaacttcttaaaagttgacatattatgtt 31262661  T
Q  490 ttccaatgcaaaatt-acttttttaggttggttaacatgtg 529  Q
    |||||||||||||||   |||||||||||| ||||||||||    
T  31262662 ttccaatgcaaaattgttttttttaggttgtttaacatgtg 31262702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 392 - 558
Target Start/End: Complemental strand, 41884776 - 41884607
Alignment:
Q  392 taacttgtgccctcaa-ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 490  Q
    |||||||||||||||| |||| ||||||||  |||||||||| ||| | |||||||||||  | |||||   ||||||||||| ||   ||||| |||||    
T  41884776 taacttgtgccctcaatggcacatgttaagtaactcattatagaaacatacatatcaaaagtcatgcatttgacttcttaaaagttaaaatattttattt 41884677  T
Q  491 tccaatgcaaaattactttt-ttaggttggttaacatgtgc-ttaagggcacaagttaacatgacccata 558  Q
    ||||||||||| ||  |||| |||||||  ||||||||||| || | ||||||||||||||| |||||||    
T  41884676 tccaatgcaaagttgtttttgttaggttccttaacatgtgcctttaaggcacaagttaacattacccata 41884607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 473
Target Start/End: Original strand, 1035572 - 1035654
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 473  Q
    |||||||||||||||||| || ||||||||  |||||||||| ||||| |||||||||||  | ||||| |||||| ||||||    
T  1035572 taacttgtgccctcaagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcttgcattcaacttattaaaa 1035654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 553
Target Start/End: Complemental strand, 8644773 - 8644680
Alignment:
Q  461 caacttcttaaaaattgtcatattgtattttccaatgcaaaattacttttttaggttggttaacatgtgct-taagggcacaagttaacatgac 553  Q
    ||||||||||||||||   || || |||||||||||||||| || ||||||| | ||  |||||||  ||| | ||||||||||||||||||||    
T  8644773 caacttcttaaaaattaaaatgttatattttccaatgcaaagttgcttttttggatttcttaacatacgctcttagggcacaagttaacatgac 8644680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 484
Target Start/End: Complemental strand, 48149311 - 48149250
Alignment:
Q  423 actcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatatt 484  Q
    |||||| ||| ||||| ||||||||||| |||||||| |||||| |||||| ||||| ||||    
T  48149311 actcataatagaaatacacatatcaaaatgcgtgcattcaactttttaaaagttgtcctatt 48149250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 392 - 546
Target Start/End: Complemental strand, 20061212 - 20061055
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 490  Q
    |||||||||||||||||| || ||| ||||  |||||||||| ||||| || ||||||||   |||||| ||||||||||||| ||| |||||| | |||    
T  20061212 taacttgtgccctcaagggcacatgctaaggaactcattatagaaatatacgtatcaaaagttgtgcattcaacttcttaaaagttgacatattatgttt 20061113  T
Q  491 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagtta 546  Q
    | ||||||||| || || ||||||||||| |||||||||| | |||||| ||||||||    
T  20061112 ttcaatgcaaagttgctctttttaggttgcttaacatgtgccctaagggaacaagtta 20061055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 549
Target Start/End: Original strand, 1705047 - 1705130
Alignment:
Q  468 ttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaaca 549  Q
    |||||| |||||||||||| ||||||||| ||||||| || ||||||||||| |||||||||| | ||||||||||||||||||    
T  1705047 ttaaaagttgtcatattgtgttttccaatccaaaattgctctttttaggttgcttaacatgtgccctaagggcacaagttaaca 1705130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 392 - 555
Target Start/End: Original strand, 14275760 - 14275925
Alignment:
Q  392 taacttgtgccctcaaggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtatttt 491  Q
    ||||||||||||  | |||| || |||||  |||||||||| ||||| || ||||||||  | ||||| ||||||||||||| ||   ||||| | ||||    
T  14275760 taacttgtgccccaagggcacatattaaggaactcattatagaaatatacgtatcaaaagtcatgcattcaacttcttaaaagttaatatattatgtttt 14275859  T
Q  492 ccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 555  Q
    ||||||||||||| || ||||| ||||| |||| ||||| ||| |||| |||||||| ||||||||    
T  14275860 ccaatgcaaaattgctctttttgggttgcttaatatgtgcctttagggaacaagttagcatgaccc 14275925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 392 - 546
Target Start/End: Complemental strand, 39420350 - 39420193
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 490  Q
    |||||||| | ||||||| || ||||||||  |||||||||| ||||| |||||| |||   ||||||| ||||||||| ||| ||   ||||| | |||    
T  39420350 taacttgttcgctcaagggcacatgttaaggaactcattatagaaatatacatattaaatgtcgtgcattcaacttcttgaaagttaaaatattatgttt 39420251  T
Q  491 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagtta 546  Q
    ||||||||||| || || ||||||||||  |||||||||| |||||||||||||||||    
T  39420250 tccaatgcaaagttgctctttttaggttccttaacatgtgccttaagggcacaagtta 39420193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 454 - 529
Target Start/End: Original strand, 42184863 - 42184939
Alignment:
Q  454 gtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgtg 529  Q
    |||||| |||||||| |||| |||||||||||| ||||| ||||||||||| || |||||| |||| ||||||||||    
T  42184863 gtgcattcaacttctaaaaagttgtcatattgtgttttcaaatgcaaaattgctctttttaagttgtttaacatgtg 42184939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 473
Target Start/End: Original strand, 2889110 - 2889192
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 473  Q
    |||||||||||||||||| || |||||||   ||| |||||||||||| |||||||||||  ||| ||| |||||||||||||    
T  2889110 taacttgtgccctcaagggcacatgttaatgaacttattataaaaatacacatatcaaaattcgtacattcaacttcttaaaa 2889192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 555
Target Start/End: Original strand, 13242226 - 13242295
Alignment:
Q  488 ttttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 555  Q
    |||||||||||||||||||| |||||| |||  |||||||||| | |||| |||||||||||||||||||    
T  13242226 ttttccaatgcaaaattactctttttaagttctttaacatgtgccataagtgcacaagttaacatgaccc 13242295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 552
Target Start/End: Original strand, 36528403 - 36528514
Alignment:
Q  443 tatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgt-gcttaagggcac 540  Q
    ||||||||  ||||||| ||||||||||||| ||| ||| || | ||||||||||||||  | || |||||| |||| |||||||||  | ||||| |||    
T  36528403 tatcaaaagtcgtgcattcaacttcttaaaagttgacatgttatgttttccaatgcaaagctgctctttttaagttgcttaacatgtaccctaaggacac 36528502  T
Q  541 aagttaacatga 552  Q
    ||||||||||||    
T  36528503 aagttaacatga 36528514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 557
Target Start/End: Complemental strand, 44721380 - 44721342
Alignment:
Q  520 ttaacatgtgct-taagggcacaagttaacatgacccat 557  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  44721380 ttaacatgtgctctaagggcacaagttaacatgacccat 44721342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 530
Target Start/End: Original strand, 36285005 - 36285109
Alignment:
Q  427 attataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaaca 525  Q
    |||||||||||| |||||| ||||   || ||| ||||||||||||| ||   ||||| | |||| |||||||||||| || |||||| |||| ||||||    
T  36285005 attataaaaatatacatattaaaagttgtacattcaacttcttaaaagttaaaatattatttttttcaatgcaaaattgctctttttatgttgtttaaca 36285104  T
Q  526 tgtgc 530  Q
    |||||    
T  36285105 tgtgc 36285109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 392 - 529
Target Start/End: Original strand, 31313311 - 31313450
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 490  Q
    |||||||||||||||||| || ||||||||  | |||||||| ||||| || ||||||||  | ||||| |||||| |||||| ||| |||||| | |||    
T  31313311 taacttgtgccctcaagggcacatgttaaggaagtcattatagaaatatacgtatcaaaagtcatgcattcaactttttaaaagttgacatattatgttt 31313410  T
Q  491 tccaatgcaaaattact-tttttaggttggttaacatgtg 529  Q
    ||||||||||| || || ||||||| ||| ||||||||||    
T  31313411 tccaatgcaaagttgctctttttagattgcttaacatgtg 31313450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 555
Target Start/End: Complemental strand, 40505411 - 40505246
Alignment:
Q  392 taacttgtgccctcaa-ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 490  Q
    ||||||||| |||||| || | ||||||||  ||||||||| |||||| | |||||||||  ||||||| ||||||||||||| ||   ||||  |||||    
T  40505411 taacttgtgtcctcaaaggtacatgttaaggaactcattatgaaaatatatatatcaaaagtcgtgcattcaacttcttaaaagttaaaatatcatattt 40505312  T
Q  491 tccaatgcaaaattac-ttttttaggttggttaacatgtgcttaagggcacaagttaacatgaccc 555  Q
    |  |||||||| ||||  |||| | |||  ||||||||||| |   ||||||||||||||||||||    
T  40505311 tttaatgcaaagttacacttttgaagttatttaacatgtgcctttaggcacaagttaacatgaccc 40505246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 558
Target Start/End: Original strand, 38869903 - 38869942
Alignment:
Q  520 ttaacatgtgc-ttaagggcacaagttaacatgacccata 558  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  38869903 ttaacatgtgccttaagggcacaagttaacatgacccata 38869942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 555
Target Start/End: Original strand, 6530310 - 6530476
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 490  Q
    |||||||||||||||||| || ||||||||  ||| |||| | ||||| |   || ||||  ||||||| ||||||||||||| |    ||||| | |||    
T  6530310 taacttgtgccctcaagggcacatgttaaggaacttattaaagaaatataagcataaaaagtcgtgcattcaacttcttaaaagtcaatatattatgttt 6530409  T
Q  491 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 555  Q
    ||||||||||| || || ||||| ||||| |||||||||| | | ||| ||||||||||||||||||    
T  6530410 tccaatgcaaagttgctctttttgggttgcttaacatgtgtccttaggacacaagttaacatgaccc 6530476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 472
Target Start/End: Complemental strand, 5493443 - 5493362
Alignment:
Q  392 taacttgtgccctcaa-ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaa 472  Q
    |||||||||||||||| |||| ||||||||| | |||||||| ||||| ||  |||||||  ||||||| |||||| |||||    
T  5493443 taacttgtgccctcaagggcacatgttaagaaagtcattatagaaatacacgcatcaaaagtcgtgcattcaactttttaaa 5493362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 555
Target Start/End: Original strand, 15067673 - 15067742
Alignment:
Q  488 ttttccaatgcaaaattactt-ttttaggttggttaacatgtgc-ttaagggcacaagttaacatgaccc 555  Q
    |||||||||||||| || ||| |||||||||  ||||||||||| || | ||||||||||||||||||||    
T  15067673 ttttccaatgcaaagttgcttattttaggttccttaacatgtgcctttacggcacaagttaacatgaccc 15067742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 413 - 496
Target Start/End: Original strand, 10960554 - 10960637
Alignment:
Q  413 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaat 496  Q
    |||||||||| ||||||||| ||||| |||||| ||||| ||||||| ||||||||||| | |||| ||||||| |||||||||    
T  10960554 atgttaagatcctcattatagaaatacacatattaaaaaacgtgcattcaacttcttaatagttgttatattgtgttttccaat 10960637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 555
Target Start/End: Original strand, 154333 - 154369
Alignment:
Q  520 ttaacatgtg-cttaagggcacaagttaacatgaccc 555  Q
    |||||||||| ||||||||||||||||||||||||||    
T  154333 ttaacatgtgtcttaagggcacaagttaacatgaccc 154369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 413 - 528
Target Start/End: Original strand, 37919184 - 37919299
Alignment:
Q  413 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattactttttt 512  Q
    ||||||||| |||||||||| ||||| || |||||||||  |||||| ||||||||||||| ||| |||||| | |||||||||| ||| ||  | ||||    
T  37919184 atgttaagaaactcattatataaatatacgtatcaaaaattgtgcattcaacttcttaaaagttgacatattatgttttccaatgtaaagttgttctttt 37919283  T
Q  513 aggttggttaacatgt 528  Q
    | |||| |||||||||    
T  37919284 atgttgcttaacatgt 37919299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 425 - 562
Target Start/End: Complemental strand, 54787922 - 54787783
Alignment:
Q  425 tcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaatta-cttttttaggttggttaa 523  Q
    |||||||||||||| |||||||||||| ||| ||| |||| |||||||| ||   || || |||||| ||||| ||| ||| ||||||||||||  |||     
T  54787922 tcattataaaaatatacatatcaaaaatcgtacattcaacatcttaaaagttaaaatgttatatttttcaatgaaaagttatcttttttaggttccttat 54787823  T
Q  524 catgtg-cttaagggcacaagttaacatgacccatatttt 562  Q
    |||||| ||||||| |||||||||||||| ||| ||||||    
T  54787822 catgtgccttaaggacacaagttaacatgtcccttatttt 54787783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 413 - 525
Target Start/End: Complemental strand, 48192702 - 48192590
Alignment:
Q  413 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattactttttt 512  Q
    ||||||||| ||| |||||| ||||| || ||| ||||| || |||| ||||||||||||| ||| |||||| | ||||| | ||||||||| |||||||    
T  48192702 atgttaagaaacttattatagaaatatacttattaaaaatcgcgcattcaacttcttaaaagttgacatattatgttttcaattgcaaaattgctttttt 48192603  T
Q  513 aggttggttaaca 525  Q
    || ||| ||||||    
T  48192602 agattgcttaaca 48192590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 473
Target Start/End: Original strand, 4539875 - 4539942
Alignment:
Q  406 aaggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 473  Q
    |||||| ||||||||| |||||||||||||||| |  ||| ||||| ||||||  |||||||||||||    
T  4539875 aaggcacatgttaagaaactcattataaaaatatatgtattaaaaatcgtgcaatcaacttcttaaaa 4539942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 413 - 554
Target Start/End: Original strand, 13637916 - 13638059
Alignment:
Q  413 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaatt-acttttt 511  Q
    ||||||||| | |||||||||||||| ||  |||||||  ||||||| ||| ||||||||||||   || || | |||||||| | ||||||   |||||    
T  13637916 atgttaagaaagtcattataaaaatatacgcatcaaaattcgtgcattcaaattcttaaaaattaaaatgttatgttttccaacgtaaaattgttttttt 13638015  T
Q  512 taggttggttaacatgtg-cttaagggcacaagttaacatgacc 554  Q
    ||||||  |||||||||| | | |||| ||||||||||||||||    
T  13638016 taggttctttaacatgtgccctcagggtacaagttaacatgacc 13638059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 558
Target Start/End: Original strand, 33791483 - 33791652
Alignment:
Q  392 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 490  Q
    ||||||||| |||||| | || ||||||||  | ||||| |||||||| || |||||||   ||| ||| |||||| |||||| ||   ||||| | |||    
T  33791483 taacttgtgtcctcaacgacatatgttaaggaattcattgtaaaaatatacgtatcaaatgtcgtacattcaactttttaaaagttaaaatattatgttt 33791582  T
Q  491 tccaatgcaaaattact-tttttaggttggttaacatgtgc-ttaagggcacaagttaacatgacccata 558  Q
    ||||||| ||| ||||| ||||| | ||  ||||||| ||| || |||||||||||||||||||||||||    
T  33791583 tccaatgtaaagttactctttttcgattctttaacatatgcctttagggcacaagttaacatgacccata 33791652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 555
Target Start/End: Complemental strand, 24355484 - 24355448
Alignment:
Q  520 ttaacatgtgc-ttaagggcacaagttaacatgaccc 555  Q
    ||||||||||| |||||||||||||||||||||||||    
T  24355484 ttaacatgtgccttaagggcacaagttaacatgaccc 24355448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 558
Target Start/End: Original strand, 28945977 - 28946005
Alignment:
Q  530 cttaagggcacaagttaacatgacccata 558  Q
    |||||||||||||||||||||||||||||    
T  28945977 cttaagggcacaagttaacatgacccata 28946005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 473
Target Start/End: Complemental strand, 41144735 - 41144656
Alignment:
Q  395 cttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 473  Q
    |||||| |||||||| || ||||||||  |||||||||| ||||| |||||||||||  ||||||| |||||| ||||||    
T  41144735 cttgtgtcctcaagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcgtgcattcaactttttaaaa 41144656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 556
Target Start/End: Original strand, 29429729 - 29429777
Alignment:
Q  509 ttttaggttggttaacatgtgct-taagggcacaagttaacatgaccca 556  Q
    |||| ||||| |||||||||||  |||||||||||||||||||||||||    
T  29429729 ttttgggttgcttaacatgtgccctaagggcacaagttaacatgaccca 29429777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 559
Target Start/End: Complemental strand, 42655932 - 42655892
Alignment:
Q  520 ttaacatgtg-cttaagggcacaagttaacatgacccatat 559  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  42655932 ttaacatgtgtcttaagggcacaagttaacatgacctatat 42655892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 555
Target Start/End: Original strand, 214277 - 214370
Alignment:
Q  464 cttcttaaaaattgtcatattgtattttccaatgcaaaattac-ttttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 555  Q
    ||||||||||||||  ||||| |||||| |||| ||||||| | |||||||| ||| |||||||||| | |||| |||||| ||||||| ||||    
T  214277 cttcttaaaaattgatatattatatttttcaatacaaaattgctttttttagattgtttaacatgtgccataagagcacaaattaacataaccc 214370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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