View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6574_low_3 (Length: 502)
Name: NF6574_low_3
Description: NF6574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6574_low_3 |
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| [»] scaffold0940 (2 HSPs) |
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Alignment Details
Target: scaffold0940 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: scaffold0940
Description:
Target: scaffold0940; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 2673 - 2199
Alignment:
| Q |
18 |
atatgccgtaattggggggttcaactttgactcctttaattatacgtgtgaactttcgataactactatgatgattttggtattatacaaacaca--gaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |
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| T |
2673 |
atatgccgtaattggggggttcaactttgactccattaatgatacgtgtgaactttcgataactactatgatgattttggttttatacaaacagaaagaa |
2574 |
T |
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| Q |
116 |
aggaatgaaaaaccctcccaacttttctcataacacaccttcagttctttcgttgcccaaacttaccaatcatatcaaacaaggatggtccgtattatct |
215 |
Q |
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| T |
2573 |
aggaatgaaaa-ccctcccaacttttctcataacatgcct-cagttctttcgtcgcccaaacttaccaatcatatcaaacaaggatggtccgtattatct |
2476 |
T |
|
| Q |
216 |
aagttctccttcctcaaacgacgtcgttttcggaaacgtttattgagttaggtttgtatcgctcaactgaattttggaacataaccctagtattacatgg |
315 |
Q |
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| T |
2475 |
atgttctccttcctcaaacgacgtcgtttgaggaaacgtttattaagttaggtttgtatcgctcgactgaattttggaacataaccctagtaatacatgg |
2376 |
T |
|
| Q |
316 |
ttagtgtaatttaattgaattgattttgtagttgttactttt--ttggtttgtgataatttcaagagacatttattgagttagtatcattacagatcttg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2375 |
ttagtgtaatttaattgaattgattttgtagttgttactttttattggtttgttataatttccagagacatttattgagttagtatcattacagatcttg |
2276 |
T |
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| Q |
414 |
ccgtattgccagggaatgacaaatttccagatcgtcggccgcaggtgtgtgatttttattttctttggtcatatctg |
490 |
Q |
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| T |
2275 |
ccgtattgccagggaatgacaaatttccagatcgtcgtccacaggtgtgtgatttttattttctttggtcatatctg |
2199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0940; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 3210 - 2813
Alignment:
| Q |
18 |
atatgccgtaattggggggttcaactttgactcctttaattatacgtgtgaactttcgataactactatgatgattttggtattatacaaacaca--gaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |
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| T |
3210 |
atatgccgtaattggggggttcaactttgactccattaatgatacgtgtgaactttcgataactactatgatgattttggttttatacaaacagaaagaa |
3111 |
T |
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| Q |
116 |
aggaatgaaaaaccctcccaacttttctcataacacaccttcagttctttcgttgcccaaacttaccaatcatatcaaacaaggatggtccgtattatct |
215 |
Q |
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| T |
3110 |
aggaatgaaaa-ccctcccaacttttctcataacatgcct-cagttctttcgtcgcccaaacttaccaatcatatcaaacaaggatggtccgtattatct |
3013 |
T |
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| Q |
216 |
aagttctccttcctcaaacgacgtcgttttcggaaacgtttattgagttaggtttgtatcgctcaactgaattttggaacataaccctagtattacatgg |
315 |
Q |
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| T |
3012 |
atgttctccttcctcaaacgacgtcgtttgaggaaacgtttattaagttaggtttgtatcgctcgactgaattttggaacataaccctagtaatacatgg |
2913 |
T |
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| Q |
316 |
ttagtgtaatttaattgaattgattttgtag-ttgttactttt-ttggtttgtgataatttcaagagacatttattgagttagtatcattacagatcttg |
413 |
Q |
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| T |
2912 |
ttagtgtaatttaattgaattggttttgtagttttttacttttattggtttgtgatgatttcaggagacatctatt-agttggtataattacagatcttg |
2814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 394
Target Start/End: Complemental strand, 43802647 - 43802536
Alignment:
| Q |
285 |
aattttggaacataa-ccctagtattacatggttagtgtaatttaattgaattgattttgtagttgttact-tttttggtttgtgataatttcaagagac |
382 |
Q |
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||||||||||| ||| ||||| || || ||| |||||||||||||||||||||| || |||| || ||||| || |||||||||||| |||||| ||||| |
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| T |
43802647 |
aattttggaacctaaaccctattaataaatgcttagtgtaatttaattgaattggttatgtaatttttactgttattggtttgtgatgatttcaggagac |
43802548 |
T |
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| Q |
383 |
atttattgagtt |
394 |
Q |
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|| ||| ||||| |
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| T |
43802547 |
atctatagagtt |
43802536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 439
Target Start/End: Complemental strand, 43802479 - 43802436
Alignment:
| Q |
396 |
gtatcattacagatcttgccgtattgccagggaatgacaaattt |
439 |
Q |
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| T |
43802479 |
gtatcattaaagatcttgctgtattgccatggaatgacaaattt |
43802436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 43802727 - 43802697
Alignment:
| Q |
218 |
gttctccttcctcaaacgacgtcgttttcgg |
248 |
Q |
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| T |
43802727 |
gttctccttcctcaaacgacgtcgttttcgg |
43802697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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