View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6574_low_4 (Length: 418)
Name: NF6574_low_4
Description: NF6574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6574_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 237 - 406
Target Start/End: Original strand, 42375542 - 42375711
Alignment:
| Q |
237 |
taacgacttcaaattcgtgtgttgaggtaaacgacattgacatgtcagcgtttgtgtgttcatgtggtggggtccatcattagatctaggactaatctta |
336 |
Q |
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| T |
42375542 |
taacgacttcaaattcgtgtgttgaggtaaacgacattgacatgtcagcgtttgtgtgttcatgtggtggggtccatcattagatctaggactaatatta |
42375641 |
T |
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| Q |
337 |
cgttatgtagcagagctaccgatacacgctttcaaaatttgtctaaatcctatgatatggttttgatttt |
406 |
Q |
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| T |
42375642 |
cgttatgtagcagagctaccgatacacgctttcaaaatttgtctaaatcctatgatatggttttgatttt |
42375711 |
T |
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Target: chr2; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 42375296 - 42375445
Alignment:
| Q |
1 |
ccaaggtgcacgtactgctttggcgtttgttactctacgcgccgatggagagcgtgagtttatgttttatagaaatccaagtgctgacatgcttcttaaa |
100 |
Q |
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| T |
42375296 |
ccaaggtgcacgtactgctttggcgtttgttactctacgcgccgatggagagcgtgagtttatgttttatagaaatccaagtgctgacatgcttcttaaa |
42375395 |
T |
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| Q |
101 |
cctgaagaactcaatctcgaactcatcagatctgtacgtaacataacaac |
150 |
Q |
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| T |
42375396 |
cctgaagaactcaatctcgaactcatcagatctgtacgtaacataacaac |
42375445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 25408345 - 25408458
Alignment:
| Q |
23 |
gcgtttgttactctacgcgccgatggagagcgtgagtttatgttttatagaaatccaagtgctgacatgcttcttaaacctgaagaactcaatctcgaac |
122 |
Q |
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| T |
25408345 |
gcgtttgttactctacgcgccgatggagagcgtgagttcatgttttacagaaatccgagtgctgacatgcttcttactcctgaagatctcaatcttgaac |
25408444 |
T |
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| Q |
123 |
tcatcagatctgta |
136 |
Q |
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| T |
25408445 |
tcatcagatctgta |
25408458 |
T |
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