View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6574_low_5 (Length: 416)

Name: NF6574_low_5
Description: NF6574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6574_low_5
NF6574_low_5
[»] chr6 (15 HSPs)
chr6 (1-265)||(13910038-13910302)
chr6 (13-220)||(14082991-14083199)
chr6 (13-176)||(13474415-13474580)
chr6 (35-167)||(13876522-13876656)
chr6 (13-169)||(13894610-13894768)
chr6 (57-219)||(14108697-14108861)
chr6 (13-143)||(13930747-13930878)
chr6 (33-169)||(13864003-13864141)
chr6 (13-159)||(14020967-14021117)
chr6 (13-142)||(14106013-14106143)
chr6 (81-184)||(14023763-14023864)
chr6 (283-358)||(13871783-13871858)
chr6 (92-162)||(14045746-14045817)
chr6 (1-114)||(14013600-14013713)
chr6 (306-339)||(13876668-13876701)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 13910302 - 13910038
Alignment:
Q  1 ctctttgtaatataatatatgattatgttatttatctcctatgtattagtctcttg-tgaattgagttgtaacttccattaccttttgtattctgtgtaa 99  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| |||||| || |||||||||||||||||| |  ||||||||||||||| | |||    
T  13910302 ctctttgtaatataatatatgattatgttatttatctctcatgtatcagtctcatgttgaattgagttgtaacttgcgataccttttgtattctctataa 13910203  T
Q  100 tttatttatgcaataaacattggtgaagtattctacaagtaaaaaatacatgtgtcatttttctcatgcagtctactaacaagttttttcttctatagaa 199  Q
    || |   || |||||||||||||||||||||||||||||||||||| | | |   |  ||||||| ||||||||| ||||||||||||||||||| ||||    
T  13910202 ttcaagcatacaataaacattggtgaagtattctacaagtaaaaaaaata-gacgctgttttctcctgcagtctattaacaagttttttcttctacagaa 13910104  T
Q  200 agaaattaaaactaataatttgaattttcaaaattacaccttcattttataatttattacattttg 265  Q
    || ||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  13910103 agcaattaaaactaataatttgaattttcaaaattaaaccttcatttgttaatttattacattttg 13910038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 14083199 - 14082991
Alignment:
Q  13 taatatatgattatgttatttatctcctatgtattagtctcttgt-gaattgagttgtaacttccattaccttttgtattctgtgtaatttatttatgca 111  Q
    |||||| || ||||||  |||||||  |||||| ||||||||||| ||||||||||| ||| | || ||||||||||||||| |||||||||||||||||    
T  14083199 taatatgtggttatgtcttttatcttttatgtaatagtctcttgttgaattgagttgcaacatgcagtaccttttgtattctctgtaatttatttatgca 14083100  T
Q  112 ataaacattggtgaagtattctacaagtaaaaaatacatgtgtcatttttctcatgcagtctactaacaagttttttcttctatagaaagaaattaaaac 211  Q
    ||||||| || |||||||||||||||||||||| |||||||||||||||| ||||||| |||||| | |||| | ||| |||||| |||  |||||| ||    
T  14083099 ataaacaatgatgaagtattctacaagtaaaaattacatgtgtcatttttttcatgcattctacttagaagtatattcgtctataaaaatcaattaagac 14083000  T
Q  212 taataattt 220  Q
    |||||||||    
T  14082999 taataattt 14082991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 13474415 - 13474580
Alignment:
Q  13 taatatatgattatgttatttatctcctatgtattagtctcttgt-gaattgagttgtaacttccattaccttttgtattctgtgtaatttatt--tatg 109  Q
    |||||| ||||||||| ||||||||| |||||  ||||||||||| |||| |||||| ||||| || ||  ||||||||||| |||||||||||  ||||    
T  13474415 taatatgtgattatgtcatttatctcttatgttatagtctcttgttgaatcgagttg-aacttgcaatagattttgtattctctgtaatttattcatatg 13474513  T
Q  110 caataaacattggtgaagtattctacaagtaaaaaatacatgtgtcatttttctcatgcagtctact 176  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13474514 caataaacattggtggtgtattctacaagtaaaaaatacatgtgtcatttttctcatgcattctact 13474580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 35 - 167
Target Start/End: Original strand, 13876522 - 13876656
Alignment:
Q  35 tctcctatgtattagtctcttgt-gaattgagtt-gtaacttccattaccttttgtattctgtgtaatttatttatgcaataaacattggtgaagtattc 132  Q
    |||| |||||| ||||||||||| |||||||||| | ||||| || |  ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13876522 tctcttatgtagtagtctcttgttgaattgagtttgcaacttgcaatttcttttgtattctgtgtaatttatttatgccataaacattggtgaagtattc 13876621  T
Q  133 tacaagtaaaaaatacatgtgtcatttttctcatg 167  Q
    |||||||| ||||||||||||||||||||||||||    
T  13876622 tacaagtagaaaatacatgtgtcatttttctcatg 13876656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 13894610 - 13894768
Alignment:
Q  13 taatatatgattatgttatttatctcctatgtattagtctcttgt-gaattgagtt-gtaacttccattaccttttgtattctgtgtaatttatttatgc 110  Q
    ||||||||| | |||| |||| |||  |||||| ||||||||||| |||| ||||| | ||||| || | ||||||||||||| ||||||||||||||||    
T  13894610 taatatatggtcatgtcatttctcttttatgtactagtctcttgttgaatggagtttgcaacttgcaattccttttgtattctctgtaatttatttatgc 13894709  T
Q  111 aataaacattggtgaagtattctacaagtaaaaaatacatgtgtcatttttctcatgca 169  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  13894710 aataaacattggtgaagtattctacaagtacaaaatacatgtgtcattttcctcatgca 13894768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 57 - 219
Target Start/End: Complemental strand, 14108861 - 14108697
Alignment:
Q  57 tgaattgagttgtaacttccattaccttttgtatt-ctgtgtaatttatttatgcaataaacattggtgaagtattctacaagtaa-aaaatacatgtgt 154  Q
    |||||||||||| ||||| || ||||||||||||| || ||||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||| |||    
T  14108861 tgaattgagttgcaacttgcaataccttttgtatttctctgtaatttattcatgcaataaacttcggtgaagtattctacaagtaaaaaaatacatttgt 14108762  T
Q  155 catttttctcatgcagtctactaacaagttttttcttctatagaaagaaattaaaactaataatt 219  Q
    ||||||||||||||| |||||| | |||| |  || |||||| ||| ||||||| ||||||||||    
T  14108761 catttttctcatgcattctacttagaagtatcatcgtctataaaaataaattaagactaataatt 14108697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 13930878 - 13930747
Alignment:
Q  13 taatatatgattatgttatttatctcctatgtattagtctcttgt-gaattgagttgtaacttccattaccttttgtattctgtgtaatttatttatgca 111  Q
    |||||| || |||||| |||| |||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||||| ||| |||||||||||||    
T  13930878 taatatgtggttatgtcatttttctcttatgtattagtctcttgttgaattgagttgtaacttgcactaccttttgtattctctgtcatttatttatgca 13930779  T
Q  112 ataaacattggtgaagtattctacaagtaaaa 143  Q
    ||||||||| ||||||||||| || |||||||    
T  13930778 ataaacatttgtgaagtattcaacgagtaaaa 13930747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 13864003 - 13864141
Alignment:
Q  33 tatctcctatgtattagtctcttgt-gaattgagtt-gtaacttccattaccttttgtattctgtgtaatttatttatgcaataaacattggtgaagtat 130  Q
    |||||| |||||| ||||||||||| |||||||||| | ||||| ||    ||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  13864003 tatctcttatgtagtagtctcttgttgaattgagtttgcaacttgcaagttcttttctattctgtgtaatttatttatgccataaacattggtgaagtat 13864102  T
Q  131 tctacaagtaaaaaatacatgtgtcatttttctcatgca 169  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  13864103 tctacaagtagaaaatacatgtgtcattttcctcatgca 13864141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 14021117 - 14020967
Alignment:
Q  13 taatatatgattatgttatttatctcctatgtattagtctcttgt-gaattgagttgtaacttccattaccttttgtatt----ctgtgtaatttattta 107  Q
    |||||| || |||||| ||||||||| |||||| ||||||||||| ||||||||||| ||||| || |||||||||||||    || ||||||||||| |    
T  14021117 taatatgtggttatgtcatttatctcttatgtaatagtctcttgttgaattgagttgcaacttgcaataccttttgtattaattctctgtaatttattca 14021018  T
Q  108 tgcaataaacattggtgaagtattctacaagtaaaaaatacatgtgtcattt 159  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  14021017 tgcaataaacattgttgaagtattctacaagta-aaaatacatgtgtcattt 14020967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 14106143 - 14106013
Alignment:
Q  13 taatatatgattatgttatttatctcctatgtattagtctcttgt-gaattgagttgtaacttccattaccttttgtattctgtgtaatttatttatgca 111  Q
    ||||||||| ||||||  |||||||| |||||| |||||| | || ||||||||||| ||||| || | ||||||||||||| ||||||||||| |||||    
T  14106143 taatatatggttatgtcgtttatctcttatgtactagtctgtcgttgaattgagttgcaacttgcaatgccttttgtattctctgtaatttattcatgca 14106044  T
Q  112 ataaacattggtgaagtattctacaagtaaa 142  Q
    ||||||||||||| |||||| ||||||||||    
T  14106043 ataaacattggtggagtattttacaagtaaa 14106013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 14023864 - 14023763
Alignment:
Q  81 ccttttgtattctgtgtaatttatttatgcaataaacattggtgaagtattctacaagtaaaaaatacatgtgtcatttttctcatgcagtctactaaca 180  Q
    ||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |||||||||| |  ||| ||||||||||||||||| | |||||| |||    
T  14023864 ccttttgtattctctgtaatttattcatgcaataaacattgatgaagtattatacaagtaaaca--acacgtgtcatttttctcatgtattctactcaca 14023767  T
Q  181 agtt 184  Q
    ||||    
T  14023766 agtt 14023763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 13871783 - 13871858
Alignment:
Q  283 ttttttagtattttactattctacatgatactaactacatgaaaagcaactgaaaatgaaaaggtacttatactta 358  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||    
T  13871783 ttttttagtattttattattctacatgatactaactacatgaaaaccaactcaaaaagaaaaggtactaatactta 13871858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 14045817 - 14045746
Alignment:
Q  92 ctgtgtaatttatttatgcaataaacattggtgaagtattctacaagt-aaaaaatacatgtgtcatttttc 162  Q
    ||||||||  |||||||||||||||||||  |||||||||||| |||| ||||||||||| | |||||||||    
T  14045817 ctgtgtaacatatttatgcaataaacattaatgaagtattctaaaagtaaaaaaatacatttctcatttttc 14045746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 14013713 - 14013600
Alignment:
Q  1 ctctttgtaatataatatatgattatgttatttatctcctatgtattagtctcttgt-gaattgagttgtaacttccattaccttttgtattctgtgtaa 99  Q
    |||||| ||||||| |||||| |||||| ||||||| | ||||||||||| |||  | ||||||||||| | | | || |||| |||||||||| ||||     
T  14013713 ctctttctaatata-tatatggttatgtcatttatcacatatgtattagtttctacttgaattgagttgcagcatgcaataccatttgtattctctgtat 14013615  T
Q  100 tttatttatgcaata 114  Q
    |||||||||||||||    
T  14013614 tttatttatgcaata 14013600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 13876668 - 13876701
Alignment:
Q  306 catgatactaactacatgaaaagcaactgaaaat 339  Q
    |||||||||||||||||||||| |||||||||||    
T  13876668 catgatactaactacatgaaaaccaactgaaaat 13876701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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