View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6574_low_6 (Length: 400)

Name: NF6574_low_6
Description: NF6574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6574_low_6
NF6574_low_6
[»] chr6 (21 HSPs)
chr6 (13-373)||(9559144-9559504)
chr6 (245-312)||(9912145-9912212)
chr6 (241-313)||(31813209-31813281)
chr6 (227-284)||(10645321-10645378)
chr6 (250-311)||(30641795-30641856)
chr6 (245-326)||(34882375-34882456)
chr6 (332-380)||(9559344-9559392)
chr6 (233-289)||(30536575-30536631)
chr6 (244-313)||(2455039-2455105)
chr6 (329-372)||(4163261-4163304)
chr6 (329-372)||(4224882-4224925)
chr6 (243-313)||(848037-848107)
chr6 (227-289)||(6538586-6538648)
chr6 (213-326)||(13907620-13907731)
chr6 (227-284)||(1681863-1681920)
chr6 (253-314)||(2735116-2735177)
chr6 (228-313)||(33074893-33074978)
chr6 (238-287)||(34009447-34009496)
chr6 (252-313)||(34403903-34403963)
chr6 (233-300)||(9559483-9559548)
chr6 (233-289)||(23063476-23063532)
[»] chr3 (39 HSPs)
chr3 (214-376)||(31365111-31365275)
chr3 (213-313)||(21367715-21367815)
chr3 (236-290)||(22911-22965)
chr3 (227-289)||(39980801-39980863)
chr3 (244-313)||(402495-402564)
chr3 (213-289)||(24085260-24085336)
chr3 (227-290)||(584117-584180)
chr3 (333-380)||(31365111-31365158)
chr3 (214-289)||(31365232-31365307)
chr3 (227-313)||(46031038-46031124)
chr3 (244-313)||(45264319-45264388)
chr3 (234-289)||(34034170-34034225)
chr3 (330-380)||(24085258-24085308)
chr3 (252-326)||(45541606-45541679)
chr3 (244-301)||(28240377-28240434)
chr3 (244-288)||(43046738-43046782)
chr3 (227-306)||(5436127-5436206)
chr3 (329-380)||(20170633-20170684)
chr3 (227-326)||(38902101-38902199)
chr3 (329-380)||(39980829-39980880)
chr3 (227-313)||(42747718-42747805)
chr3 (208-282)||(47132397-47132469)
chr3 (227-265)||(3845499-3845537)
chr3 (227-289)||(9832691-9832753)
chr3 (227-285)||(18405767-18405825)
chr3 (227-289)||(30443965-30444027)
chr3 (227-305)||(34610742-34610820)
chr3 (250-296)||(34637944-34637990)
chr3 (227-305)||(46778127-46778205)
chr3 (331-380)||(18405752-18405801)
chr3 (248-313)||(26878165-26878230)
chr3 (244-301)||(37389243-37389300)
chr3 (327-364)||(41633474-41633511)
chr3 (331-380)||(49556964-49557013)
chr3 (329-377)||(1820051-1820098)
chr3 (233-313)||(26878248-26878328)
chr3 (332-380)||(46886614-46886662)
chr3 (329-380)||(47132418-47132467)
chr3 (253-313)||(53952096-53952155)
[»] chr1 (54 HSPs)
chr1 (227-307)||(2295150-2295230)
chr1 (243-313)||(11941310-11941380)
chr1 (227-313)||(27146191-27146277)
chr1 (208-289)||(38001667-38001748)
chr1 (233-281)||(2777971-2778019)
chr1 (237-312)||(3887578-3887653)
chr1 (208-283)||(33186384-33186459)
chr1 (327-380)||(27146172-27146225)
chr1 (227-288)||(37617401-37617462)
chr1 (241-326)||(49938782-49938867)
chr1 (233-289)||(38247399-38247455)
chr1 (208-288)||(43230689-43230769)
chr1 (329-380)||(2295196-2295247)
chr1 (227-326)||(3233951-3234050)
chr1 (250-313)||(27820156-27820218)
chr1 (248-326)||(7941641-7941719)
chr1 (329-383)||(14385712-14385766)
chr1 (329-375)||(14576573-14576619)
chr1 (227-289)||(29904823-29904885)
chr1 (329-383)||(34952299-34952353)
chr1 (227-313)||(36514612-36514698)
chr1 (331-380)||(2777991-2778040)
chr1 (252-313)||(4445756-4445816)
chr1 (244-289)||(9572054-9572099)
chr1 (244-305)||(10667316-10667377)
chr1 (327-368)||(35017694-35017735)
chr1 (233-302)||(38018306-38018375)
chr1 (213-289)||(5720997-5721073)
chr1 (227-307)||(15943014-15943094)
chr1 (227-279)||(33204330-33204382)
chr1 (245-313)||(45975738-45975806)
chr1 (329-380)||(33186406-33186457)
chr1 (241-288)||(34795396-34795443)
chr1 (227-282)||(39976146-39976201)
chr1 (330-377)||(42575389-42575436)
chr1 (227-290)||(50644191-50644254)
chr1 (329-383)||(2295288-2295342)
chr1 (227-313)||(6102202-6102287)
chr1 (329-383)||(28287896-28287950)
chr1 (260-326)||(38882881-38882947)
chr1 (244-305)||(1432571-1432632)
chr1 (331-380)||(1432615-1432664)
chr1 (329-378)||(15477655-15477704)
chr1 (228-309)||(17577647-17577728)
chr1 (241-326)||(27970244-27970329)
chr1 (252-289)||(36070252-36070289)
chr1 (234-279)||(41162993-41163038)
chr1 (277-313)||(489038-489074)
chr1 (227-279)||(14385729-14385781)
chr1 (327-367)||(21002268-21002308)
chr1 (331-367)||(22416832-22416868)
chr1 (249-313)||(24915009-24915073)
chr1 (233-312)||(38480516-38480596)
chr1 (327-367)||(41505787-41505827)
[»] chr7 (38 HSPs)
chr7 (227-313)||(33601346-33601432)
chr7 (233-313)||(33678828-33678908)
chr7 (250-313)||(21568454-21568517)
chr7 (233-288)||(48140276-48140331)
chr7 (251-308)||(17248605-17248662)
chr7 (227-312)||(20526495-20526580)
chr7 (243-312)||(44989629-44989698)
chr7 (227-312)||(48470093-48470178)
chr7 (227-279)||(18765366-18765418)
chr7 (227-326)||(36517614-36517711)
chr7 (208-303)||(5947299-5947394)
chr7 (329-380)||(5947341-5947392)
chr7 (227-326)||(19302499-19302598)
chr7 (327-380)||(22283563-22283616)
chr7 (227-288)||(27863661-27863722)
chr7 (233-326)||(39967955-39968048)
chr7 (208-289)||(46078171-46078252)
chr7 (328-380)||(20526546-20526598)
chr7 (243-287)||(21196342-21196386)
chr7 (226-306)||(33601962-33602042)
chr7 (243-286)||(19214358-19214401)
chr7 (332-367)||(32410653-32410688)
chr7 (329-380)||(38138411-38138462)
chr7 (227-289)||(4970728-4970790)
chr7 (212-289)||(32410611-32410689)
chr7 (346-380)||(33601346-33601380)
chr7 (227-284)||(420437-420494)
chr7 (331-380)||(18765384-18765433)
chr7 (233-326)||(19022527-19022620)
chr7 (252-313)||(20553151-20553211)
chr7 (248-305)||(27288003-27288060)
chr7 (330-383)||(27863645-27863698)
chr7 (256-313)||(37832106-37832163)
chr7 (244-313)||(45593576-45593645)
chr7 (327-367)||(1418532-1418572)
chr7 (233-289)||(17944285-17944341)
chr7 (233-281)||(18962525-18962573)
chr7 (329-373)||(46407340-46407384)
[»] chr4 (43 HSPs)
chr4 (208-326)||(54426078-54426196)
chr4 (227-312)||(17822801-17822886)
chr4 (227-307)||(1706676-1706756)
chr4 (233-313)||(49939893-49939973)
chr4 (329-380)||(54426143-54426194)
chr4 (236-289)||(39603115-39603168)
chr4 (327-383)||(24169360-24169416)
chr4 (244-312)||(54069370-54069438)
chr4 (329-376)||(1374495-1374542)
chr4 (329-380)||(8705041-8705092)
chr4 (234-289)||(21731599-21731654)
chr4 (243-326)||(49202680-49202763)
chr4 (227-285)||(8705017-8705075)
chr4 (227-289)||(22030275-22030337)
chr4 (208-289)||(23319925-23320004)
chr4 (227-313)||(25904159-25904245)
chr4 (208-289)||(26782-26863)
chr4 (267-312)||(2703076-2703121)
chr4 (244-313)||(13126529-13126598)
chr4 (248-289)||(29774312-29774353)
chr4 (327-380)||(39603088-39603140)
chr4 (244-289)||(49940120-49940165)
chr4 (233-289)||(15173245-15173301)
chr4 (233-313)||(20719751-20719831)
chr4 (246-326)||(50681044-50681124)
chr4 (329-380)||(18815123-18815174)
chr4 (329-380)||(40830949-40830999)
chr4 (227-282)||(55414349-55414404)
chr4 (329-383)||(437083-437137)
chr4 (208-250)||(24444105-24444147)
chr4 (254-296)||(25434450-25434492)
chr4 (227-289)||(27043766-27043828)
chr4 (329-375)||(35571550-35571596)
chr4 (227-289)||(39691085-39691147)
chr4 (227-285)||(40174633-40174691)
chr4 (252-313)||(1137760-1137820)
chr4 (252-313)||(21043197-21043257)
chr4 (233-326)||(24169298-24169391)
chr4 (208-313)||(25571308-25571412)
chr4 (327-367)||(29126180-29126220)
chr4 (213-313)||(35571553-35571653)
chr4 (227-290)||(40830966-40831029)
chr4 (207-303)||(55437134-55437230)
[»] scaffold0057 (1 HSPs)
scaffold0057 (234-326)||(24656-24748)
[»] chr8 (39 HSPs)
chr8 (244-312)||(28763417-28763485)
chr8 (227-313)||(31716163-31716249)
chr8 (208-326)||(43045642-43045760)
chr8 (228-289)||(26771337-26771398)
chr8 (327-383)||(9130236-9130292)
chr8 (331-383)||(43717855-43717907)
chr8 (213-285)||(43717856-43717928)
chr8 (208-307)||(30251371-30251470)
chr8 (227-313)||(27028879-27028965)
chr8 (247-313)||(32840942-32841008)
chr8 (224-313)||(18591909-18591998)
chr8 (224-313)||(35749503-35749592)
chr8 (230-287)||(38648425-38648482)
chr8 (327-380)||(44792756-44792809)
chr8 (233-313)||(1930083-1930163)
chr8 (210-313)||(12976260-12976363)
chr8 (329-380)||(36963273-36963324)
chr8 (213-288)||(36963276-36963351)
chr8 (233-326)||(35643930-35644023)
chr8 (329-373)||(13958005-13958049)
chr8 (227-302)||(1058013-1058088)
chr8 (277-312)||(1113107-1113142)
chr8 (244-287)||(6882001-6882044)
chr8 (329-380)||(18591895-18591946)
chr8 (329-380)||(30251373-30251424)
chr8 (329-380)||(35643907-35643958)
chr8 (227-289)||(35534549-35534611)
chr8 (208-250)||(35869904-35869946)
chr8 (258-311)||(7514628-7514681)
chr8 (244-289)||(10758210-10758255)
chr8 (257-314)||(12851223-12851279)
chr8 (244-285)||(27754479-27754520)
chr8 (244-317)||(40859736-40859808)
chr8 (252-312)||(2487970-2488029)
chr8 (213-261)||(9130241-9130289)
chr8 (245-313)||(18133704-18133772)
chr8 (329-377)||(38602430-38602478)
chr8 (329-369)||(40157622-40157662)
chr8 (227-307)||(41589640-41589720)
[»] chr5 (48 HSPs)
chr5 (208-307)||(10640007-10640106)
chr5 (238-313)||(39248147-39248221)
chr5 (227-313)||(7985017-7985103)
chr5 (208-305)||(12433090-12433187)
chr5 (213-304)||(11700219-11700310)
chr5 (329-380)||(42100411-42100462)
chr5 (255-313)||(7808553-7808611)
chr5 (247-313)||(16457935-16458001)
chr5 (207-289)||(16937799-16937881)
chr5 (234-311)||(19460330-19460407)
chr5 (227-311)||(9202684-9202768)
chr5 (252-295)||(18853076-18853119)
chr5 (249-312)||(42582354-42582417)
chr5 (233-310)||(6096598-6096675)
chr5 (227-289)||(9107162-9107224)
chr5 (227-326)||(12425606-12425707)
chr5 (227-289)||(34102249-34102311)
chr5 (227-312)||(39105513-39105599)
chr5 (247-289)||(39154960-39155002)
chr5 (329-378)||(16937802-16937851)
chr5 (227-312)||(31038333-31038418)
chr5 (227-312)||(31047557-31047642)
chr5 (233-286)||(41981645-41981698)
chr5 (213-286)||(43300953-43301026)
chr5 (227-295)||(35445780-35445848)
chr5 (244-312)||(42583295-42583363)
chr5 (329-380)||(11700262-11700313)
chr5 (227-282)||(15015922-15015977)
chr5 (247-302)||(29925900-29925955)
chr5 (244-307)||(32859673-32859736)
chr5 (244-307)||(32861845-32861908)
chr5 (244-307)||(32862629-32862692)
chr5 (329-380)||(43300978-43301029)
chr5 (243-313)||(1464972-1465042)
chr5 (245-307)||(3520631-3520693)
chr5 (235-313)||(41419367-41419445)
chr5 (328-378)||(41419421-41419471)
chr5 (328-378)||(41534540-41534590)
chr5 (227-313)||(42100359-42100445)
chr5 (327-376)||(12857255-12857304)
chr5 (244-305)||(32942650-32942711)
chr5 (227-312)||(40426814-40426899)
chr5 (327-367)||(5377114-5377154)
chr5 (331-367)||(10771809-10771845)
chr5 (244-300)||(11064727-11064783)
chr5 (332-380)||(22209746-22209794)
chr5 (233-265)||(32372708-32372740)
chr5 (233-285)||(32941545-32941597)
[»] chr2 (48 HSPs)
chr2 (227-289)||(42659147-42659209)
chr2 (244-313)||(36534816-36534885)
chr2 (231-313)||(42457996-42458078)
chr2 (240-313)||(16451166-16451239)
chr2 (233-313)||(18066176-18066256)
chr2 (329-380)||(7928217-7928268)
chr2 (329-376)||(15305778-15305825)
chr2 (233-284)||(21828039-21828090)
chr2 (233-313)||(43279469-43279551)
chr2 (208-313)||(7928215-7928321)
chr2 (227-289)||(15757594-15757656)
chr2 (244-326)||(40682348-40682430)
chr2 (227-312)||(449896-449981)
chr2 (227-312)||(750719-750804)
chr2 (327-380)||(3312177-3312230)
chr2 (244-313)||(7035520-7035589)
chr2 (233-282)||(30331830-30331879)
chr2 (213-265)||(9174911-9174963)
chr2 (244-312)||(24100977-24101045)
chr2 (227-307)||(41851589-41851669)
chr2 (260-312)||(43570462-43570514)
chr2 (245-308)||(4606978-4607041)
chr2 (252-295)||(32837388-32837431)
chr2 (329-380)||(42659130-42659181)
chr2 (213-288)||(44590097-44590172)
chr2 (241-307)||(32592640-32592706)
chr2 (274-312)||(36043953-36043991)
chr2 (247-313)||(41812048-41812114)
chr2 (227-289)||(42419865-42419927)
chr2 (243-284)||(2142731-2142772)
chr2 (250-307)||(5745744-5745801)
chr2 (252-313)||(5902511-5902571)
chr2 (331-380)||(9174915-9174964)
chr2 (208-265)||(15305770-15305827)
chr2 (227-312)||(18178998-18179083)
chr2 (227-312)||(19608569-19608654)
chr2 (257-314)||(28677626-28677682)
chr2 (327-380)||(30331851-30331904)
chr2 (243-312)||(38916261-38916330)
chr2 (327-368)||(40837354-40837395)
chr2 (248-313)||(41293120-41293185)
chr2 (329-366)||(42868400-42868437)
chr2 (245-284)||(389788-389828)
chr2 (328-380)||(15757576-15757628)
chr2 (329-373)||(26143561-26143605)
chr2 (329-361)||(40672750-40672782)
chr2 (227-279)||(42868417-42868469)
chr2 (331-379)||(44590125-44590173)
[»] scaffold0528 (1 HSPs)
scaffold0528 (227-312)||(918-1003)


Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 373
Target Start/End: Original strand, 9559144 - 9559504
Alignment:
Q  13 aatatcggcattgtcaattgagctaggtcttacggaccacttggttcacttaagcatggttgagtttcgtaattgtaaatataaaaataggctcgttgtt 112  Q
    |||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9559144 aatatcagtattgtcaattgagctaggccttacggaccacttggttcacttaagcatggttgagttttgtaattgtaaatataaaaataggctcgttgtt 9559243  T
Q  113 aactacgttttcaaattgtgatcgcagtaacagtgtgtgagattattttgttctacatataattgttgccaaatgcggcttatgtgatcgttgcacctgc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9559244 aactacgttttcaaattgtgatcgcagtaacagtgtgtgagatttttttgttgtacatataattgttgccaaatgcggcttatgtgatcgttgcacctgc 9559343  T
Q  213 ttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9559344 ttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 9559443  T
Q  313 cgatttattctcatcttgtttggattggcttaattgagcttatctattggcataaattttg 373  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  9559444 cgatttattctcatcttgtttggattggcttagttgcgcttatctattggcataaattttg 9559504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 9912145 - 9912212
Alignment:
Q  245 ataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    |||||||||| | |||||||| |||||| |||||||| |||||||  |||||||||||||||||||||    
T  9912145 ataagttttgggcgactgtttcggagaacttatgaaaccagcttatgacattgttcataagctgtttt 9912212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 31813281 - 31813209
Alignment:
Q  241 tggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||||||||||||||||| ||| |||||| |||||||||  |||||  | ||||||||||||| ||||||    
T  31813281 tggcataagttttgtgagactatttgggagaacttatgaaaattgcttatgagattgttcataagccgttttc 31813209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 10645321 - 10645378
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaaca 284  Q
    ||||| ||||||| || |||||||||||| ||||||||| |||||| |||||||||||    
T  10645321 ttgaggttatctaatgacataagttttgtaagactgtttgggagaacttatgaaaaca 10645378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 30641856 - 30641795
Alignment:
Q  250 ttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttt 311  Q
    |||||||||| ||| |  ||||| |||||||||||| |||||||||| ||||||||||||||    
T  30641856 ttttgtgagattgtgtgagagaacttatgaaaacagtttacaacatttttcataagctgttt 30641795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 34882375 - 34882456
Alignment:
Q  245 ataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    |||||||||||  ||||||||||||||| ||||||||| |  |||  |||||||||||||| ||||||| | ||||| ||||    
T  34882375 ataagttttgttggactgtttaggagaatttatgaaaataagttatgacattgttcataagttgttttccacttattttcat 34882456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 9559344 - 9559392
Alignment:
Q  332 ttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    ||||||| || |||||||| |||||||||||||||| ||||||||||||    
T  9559344 ttggatttgcctaattgagattatctattggcataagttttgtgagact 9559392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 30536631 - 30536575
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||||| |||| |||||||||||||||||||| |||| | ||||||||| ||||||    
T  30536631 ttatctactggcgtaagttttgtgagactgtttgggaggacttatgaaaatagctta 30536575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 2455105 - 2455039
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||||||||||||||||| |||||| || ||||||   ||||  ||||||||||||| ||||||||    
T  2455105 cataagttttgtgagactgtttgggagaacttctgaaaa---cttatgacattgttcataacctgttttc 2455039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 4163304 - 4163261
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaatttt 372  Q
    |||||||||||||||| ||||||||||||| |||||||| ||||    
T  4163304 tgtttggattggcttatttgagcttatctactggcataagtttt 4163261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 4224925 - 4224882
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaatttt 372  Q
    |||||||||||||||| ||||||||||||| |||||||| ||||    
T  4224925 tgtttggattggcttatttgagcttatctactggcataagtttt 4224882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 848107 - 848037
Alignment:
Q  243 gcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||||||||||||||||||| | |||| |||| ||||| |||||  ||||| ||| |||||| |||||    
T  848107 gcataagttttgtgagactgtttggaagaacttataaaaactgcttatgacatttttcttaagcttttttc 848037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 6538648 - 6538586
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| |||| || |||||||||||| |||||||||||  |||||| | ||||||||||||||    
T  6538648 ttgagtttatgtagtggcataagtttggtgagactgttcgggagaattgatgaaaacagctta 6538586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 326
Target Start/End: Complemental strand, 13907731 - 13907620
Alignment:
Q  213 ttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||||| || || ||||| ||||||| ||||||||||||  |||||| ||||  ||||| |||||||||||||||   |||||||||| ||| | ||||    
T  13907731 ttggattcgcttatttgagtttatctagtggcataagttt--tgagacggtttgagagaatttatgaaaacagcttctgacattgttcacaagttatttt 13907634  T
Q  313 cgatttattctcat 326  Q
    |  |||||| ||||    
T  13907633 cagtttattttcat 13907620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 1681863 - 1681920
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaaca 284  Q
    ||||| ||||||||||| |||||||||||||||| ||| | ||| | |||||||||||    
T  1681863 ttgagtttatctattggtataagttttgtgagaccgttcaagagtacttatgaaaaca 1681920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 314
Target Start/End: Complemental strand, 2735177 - 2735116
Alignment:
Q  253 tgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcg 314  Q
    |||||||||||||  || || |||||||||| |||||  ||||| |||||||||||||||||    
T  2735177 tgtgagactgtttgagataacttatgaaaacggcttatgacatttttcataagctgttttcg 2735116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 33074893 - 33074978
Alignment:
Q  228 tgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||| |||||||||| ||| |||||||||||||||||  ||||||   ||||||||| ||   ||||||| ||||||| |||||||    
T  33074893 tgagcttatctattgccatgagttttgtgagactgttggggagaatggatgaaaacatctattaacattggtcataagttgttttc 33074978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 34009447 - 34009496
Alignment:
Q  238 tattggcataagttttgtgagactgtttaggagaagttatgaaaacagct 287  Q
    |||||||||| | |||||||||| |||| |||||| ||||||||||||||    
T  34009447 tattggcatatgatttgtgagacagtttgggagaatttatgaaaacagct 34009496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 34403963 - 34403903
Alignment:
Q  252 ttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||| |||||||||||||||||||| ||||||| ||||  ||| |||||||||| |||||||    
T  34403963 ttgttagactgtttaggagaagttaagaaaacaacttatgaca-tgttcataaggtgttttc 34403903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 9559483 - 9559548
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttc 300  Q
    |||||||||||||||| |||||  ||||| ||| |||||| ||||||||||| ||||  |||||||||    
T  9559483 ttatctattggcataaattttg--agactatttgggagaacttatgaaaacaacttatgacattgttc 9559548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 23063476 - 23063532
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||||| ||||||||||||||  | ||||||||| |||| ||||||||| ||||||    
T  23063476 ttatctactggcataagttttgatacactgtttagaagaacttatgaaaatagctta 23063532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 376
Target Start/End: Original strand, 31365111 - 31365275
Alignment:
Q  214 tggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||| || || ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||  ||| | |||||||||| |||||    
T  31365111 tggattggcttatttgagcttatctattggcataagttttgtgagactgtttgggagaacttatgaaagcagcttatgacaattttcataagcttttttc 31365210  T
Q  314 gatttattctcat--cttgtttggattggcttaattgagcttatctattggcataaattttgtga 376  Q
     | | ||| ||||   |  | |||||||||||| ||||| |||||||||||||||| ||||||||    
T  31365211 aactcattttcataaatattatggattggcttatttgagtttatctattggcataatttttgtga 31365275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 313
Target Start/End: Complemental strand, 21367815 - 21367715
Alignment:
Q  213 ttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||||| || || |||||||||||||   |||||||||||||| |||||||| |||||| ||||||||||||||||  |||||||||| ||||||||||    
T  21367815 ttggattggcttatttgagattatctaccagcataagttttgtgggactgtttgggagaacttatgaaaacagcttatgacattgttcacaagctgtttt 21367716  T
Q  313 c 313  Q
    |    
T  21367715 c 21367715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 22911 - 22965
Alignment:
Q  236 tctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttac 290  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22911 tctactggcataagttttgtgagattgtttaggagaagttatgaaaacagcttac 22965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 39980863 - 39980801
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| ||||||| | |||||||||||||||||||||||| ||||| ||||||||||||||||    
T  39980863 ttgagcttatctactagcataagttttgtgagactgtttaagagaacttatgaaaacagctta 39980801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 402495 - 402564
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||||||  ||||||||| ||||||  |||||||||||||||  ||||||||||||||||||||||    
T  402495 cataagttttgcaagactgtttgggagaacgtatgaaaacagcttatgacattgttcataagctgttttc 402564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 24085260 - 24085336
Alignment:
Q  213 ttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||||| || || ||||| |||||||  ||||||||||||||||||||| || |||||| ||||||||||||||||    
T  24085260 ttggattggcttatttgagcttatctaccggcataagttttgtgagactggtttggagaacttatgaaaacagctta 24085336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 584180 - 584117
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttac 290  Q
    ||||| ||||||| | ||||||||| ||||||||||||| |||||| |||||||||||||||||    
T  584180 ttgagcttatctactagcataagttctgtgagactgttttggagaatttatgaaaacagcttac 584117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 380
Target Start/End: Original strand, 31365111 - 31365158
Alignment:
Q  333 tggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||    
T  31365111 tggattggcttatttgagcttatctattggcataagttttgtgagact 31365158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 289
Target Start/End: Original strand, 31365232 - 31365307
Alignment:
Q  214 tggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    |||||| || || ||||| |||||||||||||||| |||||||| ||||||| |||||| ||||||| ||||||||    
T  31365232 tggattggcttatttgagtttatctattggcataatttttgtgacactgtttgggagaacttatgaatacagctta 31365307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 46031124 - 46031038
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||| ||||||||||  ||||||||| |||||||||||  ||||| ||| ||||||||| ||  ||||| ||||||||||||||||    
T  46031124 ttgagtttatctattgttataagttttatgagactgtttcagagaacttacgaaaacagcctatgacattattcataagctgttttc 46031038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 45264319 - 45264388
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||||| ||||||||| ||  ||||| ||||||||||| |||||  |||||||||||||||||||||    
T  45264319 cataagtttagtgagactggttgagagaacttatgaaaacaacttacggcattgttcataagctgttttc 45264388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 34034225 - 34034170
Alignment:
Q  234 tatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    |||||| ||||| | ||||||||||||| |||||||||| ||||||||||||||||    
T  34034225 tatctactggcacacgttttgtgagactctttaggagaacttatgaaaacagctta 34034170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 24085258 - 24085308
Alignment:
Q  330 gtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    ||||||||||||||| |||||||||||||  ||||||| ||||||||||||    
T  24085258 gtttggattggcttatttgagcttatctaccggcataagttttgtgagact 24085308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 326
Target Start/End: Complemental strand, 45541679 - 45541606
Alignment:
Q  252 ttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    |||| ||||||||||| |||| ||||||||||||||||  ||| ||||||||||||||||||   ||||||||||    
T  45541679 ttgtaagactgtttagaagaacttatgaaaacagcttatgaca-tgttcataagctgttttcaggttattctcat 45541606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 28240434 - 28240377
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttca 301  Q
    ||||||||||||||||| ||||| ||||| ||| ||||||||||||  ||||||||||    
T  28240434 cataagttttgtgagacagtttaagagaacttaggaaaacagcttatgacattgttca 28240377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 43046782 - 43046738
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagctt 288  Q
    |||| ||||||||||||||||| |||||| |||||||||||||||    
T  43046782 catatgttttgtgagactgtttgggagaacttatgaaaacagctt 43046738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 5436206 - 5436127
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagc 306  Q
    ||||| ||||| | || |||||||||||||| ||||||| | |||| || |||||||| ||||  |||||||||||||||    
T  5436206 ttgagtttatcaactgtcataagttttgtgacactgttttgaagaacttctgaaaacaacttatgacattgttcataagc 5436127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 20170633 - 20170684
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||||| ||||||||||||| || ||||| ||| ||||||||    
T  20170633 tgtttggattggcttatttgagcttatctagtgacataagtttagtgagact 20170684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 326
Target Start/End: Complemental strand, 38902199 - 38902101
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    ||||| ||||||| ||||||||||||||  | ||||||| | |||| ||||||||||||| ||  |||||||||||| | ||||||| | ||||| ||||    
T  38902199 ttgagcttatctactggcataagttttgcaa-actgtttggaagaatttatgaaaacagcatatgacattgttcatacgttgttttcaacttattttcat 38902101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 39980880 - 39980829
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||||  ||||||||||||| | |||||| ||||||||||||    
T  39980880 tgtttggattggcttgtttgagcttatctactagcataagttttgtgagact 39980829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 313
Target Start/End: Original strand, 42747718 - 42747805
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagc-ttacaacattgttcataagctgttttc 313  Q
    ||||| ||||||| |  ||||||| ||||||||||||||  ||||| ||||||||||| | |||  |||||||| |||||||||||||    
T  42747718 ttgagtttatctacttccataagtattgtgagactgtttttgagaacttatgaaaacaactttatgacattgtttataagctgttttc 42747805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 47132469 - 47132397
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaa 282  Q
    |||| ||||||| || || ||||| ||||||| |||||  |||||||||||||||||| |||||| |||||||||    
T  47132469 cctgtttggattggcttatttgagcttatctactggca--agttttgtgagactgttttggagaacttatgaaaa 47132397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 3845499 - 3845537
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgttt 265  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  3845499 ttgagcttatctactggcataagttttgtgagactgttt 3845537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 9832691 - 9832753
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| |||| ||||| |||||||||||| | ||||||| |||||| || |||||||||||||    
T  9832691 ttgagcttatttattgacataagttttgtcaaactgtttgggagaacttttgaaaacagctta 9832753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 18405767 - 18405825
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacag 285  Q
    ||||| ||||||| || ||||||||||||||||||||||   |||| ||||||||||||    
T  18405767 ttgagcttatctactgacataagttttgtgagactgtttgcaagaacttatgaaaacag 18405825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 30444027 - 30443965
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| ||||||| |||||||| ||| |||||||||||| | |||  ||||||||||||||||    
T  30444027 ttgagcttatctactggcataaatttggtgagactgtttggtagagcttatgaaaacagctta 30443965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 305
Target Start/End: Original strand, 34610742 - 34610820
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataag 305  Q
    ||||| ||||||| || ||||||||||||   ||| ||| |||||| |||||||||| |||||  ||||||||||||||    
T  34610742 ttgagcttatctactgacataagttttgtacaactatttgggagaacttatgaaaactgcttatgacattgttcataag 34610820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 34637944 - 34637990
Alignment:
Q  250 ttttgtgagactgtttaggagaagttatgaaaacagcttacaacatt 296  Q
    |||||||||| ||||| |||||| |||||||||||||||| ||||||    
T  34637944 ttttgtgagattgtttgggagaacttatgaaaacagcttataacatt 34637990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 305
Target Start/End: Original strand, 46778127 - 46778205
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataag 305  Q
    ||||| |||| || |||||||| |||||||| || |||| |||||| ||||||||||| ||||  ||||| ||||||||    
T  46778127 ttgagcttatttagtggcataaattttgtgaaaccgtttgggagaacttatgaaaacaacttatgacatttttcataag 46778205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 380
Target Start/End: Original strand, 18405752 - 18405801
Alignment:
Q  331 tttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||| ||| ||||||||||||| || ||||| ||||||||||||    
T  18405752 tttggattggtttatttgagcttatctactgacataagttttgtgagact 18405801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 26878230 - 26878165
Alignment:
Q  248 agttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||||||||||||| |||||| || |||||| || | |  ||||||||||||| ||||||||    
T  26878230 agttttgtgagactgtttgggagaatttgtgaaaatagttaatgacattgttcataaactgttttc 26878165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 37389300 - 37389243
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttca 301  Q
    |||||||||||||||||| ||  |||||| ||||||||||| ||||  ||||||||||    
T  37389300 cataagttttgtgagactcttcgggagaacttatgaaaacaacttatgacattgttca 37389243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 41633511 - 41633474
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggca 364  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  41633511 cttgtttggattggtttatttgagcttatctattggca 41633474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 49557013 - 49556964
Alignment:
Q  331 tttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    ||||||||||||||  |||||||||| | |||||||| ||||||||||||    
T  49557013 tttggattggcttatctgagcttatcaagtggcataagttttgtgagact 49556964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 1820051 - 1820098
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgag 377  Q
    |||||||||||||||| ||||||||||||  |||||| |||||||||||    
T  1820051 tgtttggattggcttatttgagcttatcttatggcat-aattttgtgag 1820098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 26878328 - 26878248
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||| || ||||||||  |||| |||||||  ||||| || |||||| ||||||  ||||||||||||| ||||||||    
T  26878328 ttatctactgacataagttgcgtgaaactgtttgagagaacttgtgaaaatagcttatgacattgttcataaactgttttc 26878248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 46886614 - 46886662
Alignment:
Q  332 ttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    ||||||||| ||| ||||||||||||  |||||||||||||| ||||||    
T  46886614 ttggattggtttatttgagcttatctgctggcataaattttgagagact 46886662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 47132467 - 47132418
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||||| ||||||||||||| ||||  || ||||||||||||    
T  47132467 tgtttggattggcttatttgagcttatctactggc--aagttttgtgagact 47132418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 53952155 - 53952096
Alignment:
Q  253 tgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||| |||||||| ||||| |||||||||||||| | |||| ||||||| ||||||||||    
T  53952155 tgtgaaactgtttaagagaacttatgaaaacagctgataaca-tgttcatgagctgttttc 53952096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 54)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 2295230 - 2295150
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||  ||| | ||||||||||    
T  2295230 ttgagcttatctactggcataagttttgtgagactgtttgggagaacttatgaaaacagcttatgacaattttcataagct 2295150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 11941380 - 11941310
Alignment:
Q  243 gcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||| ||| ||||||||||||| |||||  ||||||||| |||||| |||||||||||||||||||||||    
T  11941380 gcatatgttatgtgagactgtttgggagagcttatgaaaatagcttataacattgttcataagctgttttc 11941310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 313
Target Start/End: Original strand, 27146191 - 27146277
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||| |||||||||||||||||||||||||||||  || | |||| ||| | ||||| ||||  ||||||||||||||||||||||    
T  27146191 ttgagcttatctattggcataagttttgtgagacttgttggaagaacttaaggaaacaacttatgacattgttcataagctgttttc 27146277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 38001748 - 38001667
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    |||||||||||  || || ||||| ||||| | || |||||||||||||||||||||| |||||| ||||||||||||||||    
T  38001748 cctgcttggataagcttatttgagtttatcaactgacataagttttgtgagactgtttgggagaacttatgaaaacagctta 38001667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 2778019 - 2777971
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaa 281  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  2778019 ttatctatttgcataagttttgtgagactgtttaggagaacttatgaaa 2777971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 3887578 - 3887653
Alignment:
Q  237 ctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||||| ||||||||||| || |||||| | |||| ||||||||||| ||||  |||||||||||||||||||||    
T  3887578 ctattggtataagttttgtaaggctgtttggaagaacttatgaaaacatcttatgacattgttcataagctgtttt 3887653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 33186459 - 33186384
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaac 283  Q
    |||| ||||||| || || ||||| |||||  |||||||||||||||||||||||| |||||||| ||||||||||    
T  33186459 cctgtttggattggcttatttgagtttatccgttggcataagttttgtgagactgtctaggagaacttatgaaaac 33186384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 27146172 - 27146225
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    ||||||||||||| || | |||||||||||||||||||||| ||||||||||||    
T  27146172 cttgtttggattgactgatttgagcttatctattggcataagttttgtgagact 27146225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 37617401 - 37617462
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctt 288  Q
    ||||| |||||||||| | ||||||||||||||||||||  ||||| |||||||||||||||    
T  37617401 ttgagtttatctattgccgtaagttttgtgagactgtttgcgagaatttatgaaaacagctt 37617462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 326
Target Start/End: Complemental strand, 49938867 - 49938782
Alignment:
Q  241 tggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    ||||||||||||||||||| ||||| |||||| ||||||||||||||||  ||| | |||| ||||| ||||| | ||||| ||||    
T  49938867 tggcataagttttgtgagattgtttgggagaacttatgaaaacagcttatgacaattttcaaaagcttttttcaacttattttcat 49938782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 38247455 - 38247399
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||||| ||||||||||||||||  ||||||| |||||| ||||||||||||||||    
T  38247455 ttatctactggcataagttttgtgtcactgtttgggagaacttatgaaaacagctta 38247399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 43230689 - 43230769
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctt 288  Q
    |||| ||||||| || || ||||| || |||| |||||||||||||  |||| |||||||||||| |||||||||||||||    
T  43230689 cctgtttggattggcatatttgagcttctctactggcataagttttacgagattgtttaggagaatttatgaaaacagctt 43230769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 2295247 - 2295196
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||| ||||||||| ||||||||||||| |||||||| ||||||||||||    
T  2295247 tgtttgaattggcttatttgagcttatctactggcataagttttgtgagact 2295196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 326
Target Start/End: Original strand, 3233951 - 3234050
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    ||||| ||||||| || | |||||||||||||||||||  |||||| ||||||||||| |||| |||| | |||||||| | ||||| | ||||| ||||    
T  3233951 ttgagcttatctagtgccgtaagttttgtgagactgttagggagaacttatgaaaacaacttataacagttttcataagtttttttctacttattttcat 3234050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 27820156 - 27820218
Alignment:
Q  250 ttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||||||||||| |||||| ||||||||| ||||||  |||||||||||||||| |||||    
T  27820156 ttttgtgagactgttttggagaatttatgaaaa-agcttattacattgttcataagctattttc 27820218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 326
Target Start/End: Complemental strand, 7941719 - 7941641
Alignment:
Q  248 agttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    |||||||||||||||||| | |||| ||||||||||||||||  |||||||||  ||||| ||||| | ||||| ||||    
T  7941719 agttttgtgagactgtttggaagaatttatgaaaacagcttatgacattgttccgaagctattttcaacttattttcat 7941641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 14385712 - 14385766
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagactatt 383  Q
    |||| ||||||||||| ||||||||||||| |||||||| ||| |||||||||||    
T  14385712 tgttcggattggcttatttgagcttatctactggcataagtttcgtgagactatt 14385766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 14576573 - 14576619
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtg 375  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||    
T  14576573 tgtttggattggcttatttgagcttatctactggcttaaattttgtg 14576619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 29904885 - 29904823
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| ||||||| | |||||||||||||||||||||||  ||||| |||| |||||||||||    
T  29904885 ttgagcttatctacttgcataagttttgtgagactgtttgagagaacttataaaaacagctta 29904823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 34952353 - 34952299
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagactatt 383  Q
    |||||||||||||||| ||||||||||||||||| ||||  ||||||||| ||||    
T  34952353 tgtttggattggcttatttgagcttatctattgggataagatttgtgagattatt 34952299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 313
Target Start/End: Original strand, 36514612 - 36514698
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||| ||||||| || |||||||||| ||||||||||  |||||| ||||||||| | ||||  |||||||| | |||||||||||    
T  36514612 ttgagtttatctactgccataagttttttgagactgttagggagaacttatgaaaataacttatgacattgtttagaagctgttttc 36514698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 2778040 - 2777991
Alignment:
Q  331 tttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||| || |||||||||||| |||||| ||||||||||||    
T  2778040 tttggattggcttattttagcttatctatttgcataagttttgtgagact 2777991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 4445816 - 4445756
Alignment:
Q  252 ttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||||||||| |||||| |||||||| ||||||| |||| |||||| |||||||||||    
T  4445816 ttgtgagactgtttgggagaatttatgaaagcagcttataaca-tgttcagaagctgttttc 4445756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 9572054 - 9572099
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    |||||| ||||||||||||||| |||||| ||||||||||||||||    
T  9572054 cataagatttgtgagactgtttgggagaacttatgaaaacagctta 9572099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 10667377 - 10667316
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataag 305  Q
    |||||||||||||||||| || || |||| ||| |||||||||| | |||||||||||||||    
T  10667377 cataagttttgtgagacttttcagaagaacttaggaaaacagctcagaacattgttcataag 10667316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 35017735 - 35017694
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataaa 368  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  35017735 cttgtttagattggcttatttgagcttatctattggcataaa 35017694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 38018306 - 38018375
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcat 302  Q
    ||||||| |||||||||||||||||||||| || ||| || |||||||| ||| |||  |||||||||||    
T  38018306 ttatctactggcataagttttgtgagactggttgggaaaacttatgaaagcagattaggacattgttcat 38018375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 5721073 - 5720997
Alignment:
Q  213 ttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||||| || || ||||| ||| ||| | |||||||||||||  |||||||| |||||| ||||||||||||||||    
T  5721073 ttggattggcttatttgagcttaactacttgcataagttttgttggactgtttgggagaacttatgaaaacagctta 5720997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 15943094 - 15943014
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    ||||| |||| |||||||||||  ||||||||||||||||||||||  |||  ||||| || |  ||||||||||||||||    
T  15943094 ttgagtttatatattggcataaactttgtgagactgtttaggagaacatatagaaacaactgatgacattgttcataagct 15943014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 33204330 - 33204382
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatga 279  Q
    ||||| ||||||| || |||||||||||||||||||||| |||||| ||||||    
T  33204330 ttgagcttatctactgacataagttttgtgagactgtttgggagaacttatga 33204382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 45975806 - 45975738
Alignment:
Q  245 ataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||| |||| |||||||||| |||||||  |||||||||||  || |||||| ||||||||||||||||    
T  45975806 ataaattttctgagactgttcaggagaacatatgaaaacagtgtataacattattcataagctgttttc 45975738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 33186457 - 33186406
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||||| ||||| |||||  ||||||||| ||||||||||||    
T  33186457 tgtttggattggcttatttgagtttatccgttggcataagttttgtgagact 33186406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 34795396 - 34795443
Alignment:
Q  241 tggcataagttttgtgagactgtttaggagaagttatgaaaacagctt 288  Q
    |||||||| ||||| |||||||||| |||||| |||||||||||||||    
T  34795396 tggcataaattttgcgagactgtttgggagaacttatgaaaacagctt 34795443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 39976146 - 39976201
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaa 282  Q
    ||||||||||||| || |||||||||||||| |||||||  ||||| |||||||||    
T  39976146 ttgagattatctactgacataagttttgtgaaactgtttgagagaacttatgaaaa 39976201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 377
Target Start/End: Original strand, 42575389 - 42575436
Alignment:
Q  330 gtttggattggcttaattgagcttatctattggcataaattttgtgag 377  Q
    |||||||||| |||| ||||||||||||| | ||||||||||||||||    
T  42575389 gtttggattgccttatttgagcttatctactagcataaattttgtgag 42575436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 50644191 - 50644254
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttac 290  Q
    ||||| ||||||| |  |||| ||||||||||||||||| |||||| ||||||||||| |||||    
T  50644191 ttgagcttatctactaacatatgttttgtgagactgtttgggagaacttatgaaaacaacttac 50644254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 2295342 - 2295288
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagactatt 383  Q
    |||||||||||||||| ||||||||||||| || | ||| |||| ||||||||||    
T  2295342 tgtttggattggcttatttgagcttatctactgacttaagttttctgagactatt 2295288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 6102287 - 6102202
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||| |||||||  ||||||| |||||||||| ||||| |||||| | ||||||||||||||  | |||||||||||  |||||||    
T  6102287 ttgagtttatctaccggcataaattttgtgagattgtttgggagaact-atgaaaacagcttatgatattgttcataaattgttttc 6102202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 28287950 - 28287896
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagactatt 383  Q
    |||||||||||||||| | ||| |||| |||||||||||  ||||||||||||||    
T  28287950 tgtttggattggcttattagagtttatatattggcataagctttgtgagactatt 28287896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 38882881 - 38882947
Alignment:
Q  260 ctgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    ||||||| |||||||||||||||||| |||  | |||||||||||| ||||||| | ||||| ||||    
T  38882881 ctgtttatgagaagttatgaaaacagattatcaaattgttcataaggtgttttcaacttattttcat 38882947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 1432632 - 1432571
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataag 305  Q
    ||||| |||||||||||||||| | |||| ||||||||| ||| ||  ||||||||||||||    
T  1432632 cataaattttgtgagactgtttggaagaacttatgaaaatagcgtatgacattgttcataag 1432571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 1432664 - 1432615
Alignment:
Q  331 tttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||| ||||||||||| |  | ||||||||||||||||||    
T  1432664 tttggattggcttatttgagcttatccaccgacataaattttgtgagact 1432615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 15477704 - 15477655
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgaga 378  Q
    |||||||||||||||| | ||||||||||| | |||||| ||||||||||    
T  15477704 tgtttggattggcttattagagcttatctacttgcataagttttgtgaga 15477655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 17577647 - 17577728
Alignment:
Q  228 tgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgt 309  Q
    |||| ||| |||||| |||||||||||||  | | ||| |  ||| |||||||||||||| | |||||||||||||||||||    
T  17577647 tgagcttacctattgacataagttttgtggtaatctttggttgaacttatgaaaacagctgataacattgttcataagctgt 17577728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 326
Target Start/End: Original strand, 27970244 - 27970329
Alignment:
Q  241 tggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    ||||||||||||||||| ||| ||| |||||| |||| ||||| | |||  ||||| |||||||||| |||||  |||||| ||||    
T  27970244 tggcataagttttgtgatactctttgggagaacttataaaaacggtttatgacatttttcataagcttttttcagtttattttcat 27970329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 36070289 - 36070252
Alignment:
Q  252 ttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  36070289 ttgtgagactgtttaggagaacttatgaaaacaactta 36070252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 41162993 - 41163038
Alignment:
Q  234 tatctattggcataagttttgtgagactgtttaggagaagttatga 279  Q
    |||||||||||||||||||| ||||||||||| ||| || ||||||    
T  41162993 tatctattggcataagttttttgagactgtttgggataacttatga 41163038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 489074 - 489038
Alignment:
Q  277 tgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  489074 tgaaaacagcttacgacattattcataagctgttttc 489038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 14385729 - 14385781
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatga 279  Q
    ||||| ||||||| |||||||||||| |||||||| ||| |||||| ||||||    
T  14385729 ttgagcttatctactggcataagtttcgtgagactattttggagaacttatga 14385781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 21002308 - 21002268
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataa 367  Q
    |||||||||||||||||| ||||||||||||| | ||||||    
T  21002308 cttgtttggattggcttatttgagcttatctacttgcataa 21002268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 367
Target Start/End: Original strand, 22416832 - 22416868
Alignment:
Q  331 tttggattggcttaattgagcttatctattggcataa 367  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  22416832 tttggattggcttatttgagcttatctactggcataa 22416868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 24915009 - 24915073
Alignment:
Q  249 gttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||||| |||||| ||| || ||||||||||| ||||  ||||| |||||||||| |||||    
T  24915009 gttttgtgaggctgtttgggacaatttatgaaaacaacttatgacatttttcataagcttttttc 24915073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 38480516 - 38480596
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatg-aaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||||| | ||||||||||||||||||| ||| |||||| | ||| |||| ||||||  |||||| |||||| |||||||    
T  38480516 ttatctagtagcataagttttgtgagactatttgggagaactaatgaaaaatagcttatgacattgctcataaactgtttt 38480596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 41505827 - 41505787
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataa 367  Q
    |||||||||||||||||| ||||||||||||| || |||||    
T  41505827 cttgtttggattggcttatttgagcttatctactgacataa 41505787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 313
Target Start/End: Original strand, 33601346 - 33601432
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||| ||||||||||||||||||||||||||||| |||  ||||| ||||||||||||||||  ||| | |||||||||| |||||    
T  33601346 ttgagcttatctattggcataagttttgtgagactcttttcgagaacttatgaaaacagcttatgacacttttcataagcttttttc 33601432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 33678908 - 33678828
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||| | ||||||||||||||||||  ||| |||||| ||||||||||| |||| |||||||||||| || |||||||    
T  33678908 ttatctacttgcataagttttgtgagacaatttgggagaacttatgaaaacaacttataacattgttcatgagatgttttc 33678828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 21568454 - 21568517
Alignment:
Q  250 ttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||||||||||| |||||| |||||||||||||||| |||| | |||||||||| |||||    
T  21568454 ttttgtgagactgtttgggagaacttatgaaaacagcttataacaattttcataagctcttttc 21568517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 48140331 - 48140276
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctt 288  Q
    ||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||    
T  48140331 ttatctattggcataagttatgtgagactgtttgggagaatgtatgaaaacagctt 48140276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 17248662 - 17248605
Alignment:
Q  251 tttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctg 308  Q
    ||||| ||||||||| |||||| |||| ||||||||||| ||||||||||||||||||    
T  17248662 tttgtaagactgtttgggagaacttataaaaacagcttataacattgttcataagctg 17248605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 20526580 - 20526495
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||| ||||||||||| | || ||||||||||||||||  ||||| |||||||||||| |||  ||||| ||| |||||||||||    
T  20526580 ttgagtttatctattggtagaaattttgtgagactgtttgagagaacttatgaaaacagtttatcacatttttcgtaagctgtttt 20526495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 44989629 - 44989698
Alignment:
Q  243 gcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||||||||||||||||||||| ||| || ||||||||||| |||   |||||||||| ||||||||||    
T  44989629 gcataagttttgtgagactgtttgggaaaacttatgaaaacaacttctgacattgttcacaagctgtttt 44989698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 48470178 - 48470093
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||| |||||||| | |||||||||| ||||| ||||| |||||| ||||||||||||||||   |||| |||||||||| ||||    
T  48470178 ttgagcttatctatagacataagttttatgagattgtttgggagaacttatgaaaacagcttatggcatttttcataagctttttt 48470093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 18765418 - 18765366
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatga 279  Q
    ||||| |||||||||| |||||||||||||||||||||| |||||| ||||||    
T  18765418 ttgagcttatctattgacataagttttgtgagactgtttgggagaacttatga 18765366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 326
Target Start/End: Complemental strand, 36517711 - 36517614
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    ||||| ||| ||| ||||||||||||| | ||||||||| |||||| |||| ||||||||||   |||||||||||||||| |||||  |||||| ||||    
T  36517711 ttgagcttagctactggcataagttttctaagactgtttgggagaacttattaaaacagctt--gacattgttcataagctattttcagtttattttcat 36517614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 303
Target Start/End: Complemental strand, 5947394 - 5947299
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcata 303  Q
    |||| ||||||| || || ||||| ||||||||||| ||||||||| ||||||||||| | |||| || ||||| |||||||  ||||| ||||||    
T  5947394 cctgtttggattggcttatttgagcttatctattggtataagttttatgagactgtttggaagaacttttgaaaccagcttatgacatttttcata 5947299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 5947392 - 5947341
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||||| ||||||||||||||||| |||| |||| |||||||    
T  5947392 tgtttggattggcttatttgagcttatctattggtataagttttatgagact 5947341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 326
Target Start/End: Original strand, 19302499 - 19302598
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    ||||| ||||||| || |||||||||||||||| | ||| |||||| ||||||||||||||||  ||| | ||||||| || ||||| | ||||| ||||    
T  19302499 ttgagcttatctactgacataagttttgtgagaatatttgggagaatttatgaaaacagcttatgacaattttcataaacttttttcaacttattttcat 19302598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 22283563 - 22283616
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    ||||||||||||| |||| |||| |||||||| || ||||||||||||||||||    
T  22283563 cttgtttggattgacttatttgaacttatctactgtcataaattttgtgagact 22283616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 27863661 - 27863722
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctt 288  Q
    ||||| ||||| | ||||||||||||||||||||| |||  ||||| |||||||||||||||    
T  27863661 ttgagcttatccactggcataagttttgtgagactatttgagagaacttatgaaaacagctt 27863722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 326
Target Start/End: Complemental strand, 39968048 - 39967955
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    ||||||||||  || ||||||||||  ||| ||  ||||| ||||||||||||||||   ||||||||||||||||||||| | ||||| ||||    
T  39968048 ttatctattgatatgagttttgtgattctggttgcgagaacttatgaaaacagcttatggcattgttcataagctgttttcaacttattttcat 39967955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 46078252 - 46078171
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    |||| ||||||| || || || || |||||||||| ||||||||||||| |  ||||  |||||||||||||||||||||||    
T  46078252 cctggttggattggcttattttagcttatctattgacataagttttgtgggtttgttcgggagaagttatgaaaacagctta 46078171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 20526598 - 20526546
Alignment:
Q  328 ttgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||| |||| ||||| ||||||||||| | |||||||||||||||    
T  20526598 ttgtttggattgacttatttgagtttatctattggtagaaattttgtgagact 20526546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 21196386 - 21196342
Alignment:
Q  243 gcataagttttgtgagactgtttaggagaagttatgaaaacagct 287  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||    
T  21196386 gcataagttttgtgagactgtttagaagaatttatgcaaacagct 21196342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 33601962 - 33602042
Alignment:
Q  226 attgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagc 306  Q
    |||||| ||||||| ||||||||||||| ||||||| |||  || || ||||||||||||||||  ||| | |||||||||    
T  33601962 attgagcttatctactggcataagttttatgagactcttttcgaaaacttatgaaaacagcttatgacacttttcataagc 33602042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 19214358 - 19214401
Alignment:
Q  243 gcataagttttgtgagactgtttaggagaagttatgaaaacagc 286  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||    
T  19214358 gcataagttttgtgagattgtttgggagaacttatgaaaacagc 19214401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 367
Target Start/End: Complemental strand, 32410688 - 32410653
Alignment:
Q  332 ttggattggcttaattgagcttatctattggcataa 367  Q
    ||||||||||||| ||||||||||||||||||||||    
T  32410688 ttggattggcttatttgagcttatctattggcataa 32410653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 38138411 - 38138462
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||| || |||| ||||||||||||||||| ||||||| |||||||||    
T  38138411 tgtttggaatgacttatttgagcttatctattggaataaattctgtgagact 38138462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 4970728 - 4970790
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| ||||||  || ||||||| |||||||||||||| |||||| ||||||||||| ||||    
T  4970728 ttgagcttatctcgtgacataagtcttgtgagactgtttgggagaacttatgaaaacaactta 4970790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 32410689 - 32410611
Alignment:
Q  212 cttggatttgcctaattgagattatctattggcataag-ttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    |||||||| || || ||||| |||||||||||||||||  ||||||| ||||||| | | || ||||||||||||||||    
T  32410689 cttggattggcttatttgagcttatctattggcataagcatttgtgaaactgttttgaataacttatgaaaacagctta 32410611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 33601346 - 33601380
Alignment:
Q  346 ttgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||||||||||| ||||||||||||    
T  33601346 ttgagcttatctattggcataagttttgtgagact 33601380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 420494 - 420437
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaaca 284  Q
    ||||| || |||| |||| |||| ||||||||||||||| |||||| |||||||||||    
T  420494 ttgagcttgtctactggcttaagctttgtgagactgtttgggagaacttatgaaaaca 420437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 18765433 - 18765384
Alignment:
Q  331 tttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||  ||| |||||||||||||||| ||||| ||||||||||||    
T  18765433 tttggattgctttatttgagcttatctattgacataagttttgtgagact 18765384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 326
Target Start/End: Original strand, 19022527 - 19022620
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    ||||||| || ||| |||||||||||| ||||| |||||| ||||||||||| ||||  ||| | |||||||| ||| ||| | ||||| ||||    
T  19022527 ttatctactgacatgagttttgtgagattgtttgggagaatttatgaaaacaacttatgacaattttcataagttgtcttcaacttattttcat 19022620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 20553211 - 20553151
Alignment:
Q  252 ttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||||||||| ||||||  ||||| ||||||||||| ||| |||||||||| |||||||    
T  20553211 ttgtgagactgttcaggagagcttatggaaacagcttacgaca-tgttcataagttgttttc 20553151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 27288060 - 27288003
Alignment:
Q  248 agttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataag 305  Q
    |||||||||||||| ||| | |||| |||||||||||||||| |||| | ||||||||    
T  27288060 agttttgtgagactatttggaagaacttatgaaaacagcttataacaattttcataag 27288003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 27863645 - 27863698
Alignment:
Q  330 gtttggattggcttaattgagcttatctattggcataaattttgtgagactatt 383  Q
    |||| ||| |||||| ||||||||||| | |||||||| |||||||||||||||    
T  27863645 gtttagataggcttatttgagcttatccactggcataagttttgtgagactatt 27863698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 37832106 - 37832163
Alignment:
Q  256 gagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||||| | |||| ||||  |||||| ||||||||||||||||||||| |||||    
T  37832106 gagactgtttggaagaacttatataaacagtttacaacattgttcataagctattttc 37832163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 45593645 - 45593576
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||| ||||||||||||||| |||||| |||| |||||| || |  ||||| |||||||||| |||||    
T  45593645 cataagctttgtgagactgtttgggagaacttataaaaacatctgatgacatttttcataagcttttttc 45593576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 1418572 - 1418532
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataa 367  Q
    ||||||||||||| |||| ||||||||||||| ||||||||    
T  1418572 cttgtttggattgacttatttgagcttatctactggcataa 1418532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 17944285 - 17944341
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||||| ||||||||| |||||||||||||||  || || |||| |||||||||||    
T  17944285 ttatctactggcataagctttgtgagactgtttcagacaacttataaaaacagctta 17944341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 18962525 - 18962573
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaa 281  Q
    ||||||| || |||||||||||| ||||||||| |||||| ||||||||    
T  18962525 ttatctactgacataagttttgttagactgttttggagaacttatgaaa 18962573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 46407384 - 46407340
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttg 373  Q
    |||| ||||||||||||||||||||||||| || ||||| |||||    
T  46407384 tgttaggattggcttaattgagcttatctactgccataagttttg 46407340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 326
Target Start/End: Complemental strand, 54426196 - 54426078
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    |||| ||||||| || || ||||| ||||||| |||||||||||||||||||||| || |||||| ||| ||||||||||||  ||| | ||||||||||    
T  54426196 cctgtttggattggcttatttgagcttatctactggcataagttttgtgagactgcttgggagaacttaggaaaacagcttatgacaattttcataagct 54426097  T
Q  308 gttttcgatttattctcat 326  Q
     ||||| | ||||| ||||    
T  54426096 tttttcaagttattttcat 54426078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 17822801 - 17822886
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||| ||||||| || |||||||| ||||||||| ||||||||||  |||||||||||||||  ||||| |||||||||| ||||    
T  17822801 ttgagcttatctactgacataagttctgtgagactatttaggagaacatatgaaaacagcttatgacatttttcataagctttttt 17822886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 1706756 - 1706676
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    ||||| ||||||| || ||||||||||||||||| ||||  ||||| ||||||||||||||||   |||||||||||||||    
T  1706756 ttgagtttatctactgacataagttttgtgagacggtttgagagaaattatgaaaacagcttatggcattgttcataagct 1706676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 49939893 - 49939973
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||| | ||||||| ||||||||||| ||| | |||| ||||||||| ||||||  ||||||||||||||||||||||    
T  49939893 ttatctactagcataagctttgtgagactatttggaagaacttatgaaaagagcttatgacattgttcataagctgttttc 49939973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 54426194 - 54426143
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||||| ||||||||||||| |||||||| ||||||||||||    
T  54426194 tgtttggattggcttatttgagcttatctactggcataagttttgtgagact 54426143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 39603115 - 39603168
Alignment:
Q  236 tctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    |||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||    
T  39603115 tctattggtataagttttgtgagactgtttgggagaacttaggaaaacagctta 39603168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 383
Target Start/End: Complemental strand, 24169416 - 24169360
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataaattttgtgagactatt 383  Q
    |||||||||||||||||| | ||| ||||||| |||||||| |||||||||||||||    
T  24169416 cttgtttggattggcttattagagtttatctactggcataagttttgtgagactatt 24169360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 54069370 - 54069438
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||||||||||| |||||||| | || | || |||||||||||||||||| | |||||||||||||||    
T  54069370 cataagttttgtgggactgtttggtaggatttttgaaaacagcttacaacaattttcataagctgtttt 54069438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 1374495 - 1374542
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtga 376  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||    
T  1374495 tgttaggattggcttaattgagcttatctactagcataaattttgtga 1374542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 8705092 - 8705041
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||| | |||||||||||||||| ||||| ||||||||||||    
T  8705092 tgtttggattggctcatttgagcttatctattgacataagttttgtgagact 8705041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 21731599 - 21731654
Alignment:
Q  234 tatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    |||||| || |||||||||||||||| ||||| |||||| ||||||||||||||||    
T  21731599 tatctactgacataagttttgtgagattgtttgggagaacttatgaaaacagctta 21731654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 326
Target Start/End: Complemental strand, 49202763 - 49202680
Alignment:
Q  243 gcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    ||||||||||||||||||||||| | |||| |||| ||| ||| |||  |||||||||||||| ||||||| | ||||| ||||    
T  49202763 gcataagttttgtgagactgtttggaagaacttataaaaccagattatcacattgttcataagttgttttcaacttattttcat 49202680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 8705075 - 8705017
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacag 285  Q
    ||||| |||||||||| ||||||||||||||||||| || |||||| |||| |||||||    
T  8705075 ttgagcttatctattgacataagttttgtgagactgattgggagaacttataaaaacag 8705017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 22030337 - 22030275
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| || |||||| |||||||||||||||| || ||| |||||| ||||||||||||||||    
T  22030337 ttgagcttgtctattagcataagttttgtgagcctatttgggagaacttatgaaaacagctta 22030275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 23320004 - 23319925
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    |||| ||||||| || || ||||||||||||| | |||||  |||||  ||||||||| |||||||||||||||||||||||    
T  23320004 cctgtttggattggcttatttgagattatctactagcatacattttg--agactgtttgggagaagttatgaaaacagctta 23319925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 313
Target Start/End: Original strand, 25904159 - 25904245
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||| ||||| | || ||||| |||||||||||||||| |||||  ||||||||||||||||   |||| |||||||||| |||||    
T  25904159 ttgagcttatccaatgacataaattttgtgagactgtttgggagagcttatgaaaacagcttatgccatttttcataagcttttttc 25904245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 289
Target Start/End: Original strand, 26782 - 26863
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    |||| ||||||| || || ||||| ||||| | ||||||||| ||||| |||||||||  ||||| ||||||||||||||||    
T  26782 cctgtttggattggcttatttgagcttatcaactggcataagctttgttagactgtttccgagaaattatgaaaacagctta 26863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 2703121 - 2703076
Alignment:
Q  267 ggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    |||||| ||| ||||||||||| |||||||||||||||||||||||    
T  2703121 ggagaacttacgaaaacagcttgcaacattgttcataagctgtttt 2703076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 13126529 - 13126598
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||||||||||||||||| | |||| |||| |||||||||||  |||||  ||||||||| |||||    
T  13126529 cataagttttgtgagactgtttggaagaacttataaaaacagcttatgacatttatcataagcttttttc 13126598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 29774353 - 29774312
Alignment:
Q  248 agttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  29774353 agttttgtgagactgtttaggagaacttatgaaaatagctta 29774312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 39603088 - 39603140
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||||||| |||||||| |||||||| |||| ||||||||||||    
T  39603088 cttgtttggattggcttatttgagctt-tctattggtataagttttgtgagact 39603140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 49940120 - 49940165
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||    
T  49940120 cataagttttgtgagactgtttgagagaacttatgaaaacagctta 49940165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 15173245 - 15173301
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||||| || |||||||||||||||||||||| |||||  ||||||||| ||||||    
T  15173245 ttatctactgacataagttttgtgagactgtttgggagactttatgaaaatagctta 15173301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 20719831 - 20719751
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||| | |||||||||||||| |||| ||| | |||| ||| ||||||||||||  ||||||||  ||||||||||||    
T  20719831 ttatctactagcataagttttgtgcgactatttggaagaacttaagaaaacagcttatgacattgtttgtaagctgttttc 20719751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 326
Target Start/End: Original strand, 50681044 - 50681124
Alignment:
Q  246 taagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    ||||||||||||||||||||  ||||| |||||||||||| | |  ||| | |||||||||| ||||| ||||||| ||||    
T  50681044 taagttttgtgagactgtttgagagaacttatgaaaacagttaatgacaattttcataagcttttttcaatttattttcat 50681124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 18815174 - 18815123
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||||| ||||||||| ||| | |||||| ||||||||||||    
T  18815174 tgtttggattggcttatttgagcttacctactagcataagttttgtgagact 18815123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 40830949 - 40830999
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||| | ||||||||||||||| |||||| ||||||||||||    
T  40830949 tgtttggattggctaatttgagcttatctatt-gcataagttttgtgagact 40830999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 55414349 - 55414404
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaa 282  Q
    |||||| |||||| |||||||| ||||||||  ||||||||||||| |||||||||    
T  55414349 ttgagagtatctactggcataatttttgtgatgctgtttaggagaatttatgaaaa 55414404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 437083 - 437137
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagactatt 383  Q
    |||||||||||| ||| |||||| |||||| | |||||| |||||||||||||||    
T  437083 tgtttggattggtttatttgagcatatctagtagcataacttttgtgagactatt 437137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 24444147 - 24444105
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagt 250  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||    
T  24444147 cctgtttggatttgactatttgagattatctattggcataagt 24444105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 25434450 - 25434492
Alignment:
Q  254 gtgagactgtttaggagaagttatgaaaacagcttacaacatt 296  Q
    ||||||||||||||||||  |||||||||||||||| ||||||    
T  25434450 gtgagactgtttaggagagcttatgaaaacagcttataacatt 25434492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 27043766 - 27043828
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| ||||||| || |||||||||||||| ||||||| | |||||||||| ||| ||||||    
T  27043766 ttgagcttatctactgacataagttttgtgaaactgtttggaagaagttatgcaaatagctta 27043828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 35571550 - 35571596
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtg 375  Q
    |||||||||||||||| ||||||||||||| | |||||| |||||||    
T  35571550 tgtttggattggcttatttgagcttatctactagcataagttttgtg 35571596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 39691085 - 39691147
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| ||||||| | |||||||||||||||||||||||  ||||| |||||  |||||||||    
T  39691085 ttgagcttatctactagcataagttttgtgagactgtttgagagaatttatgggaacagctta 39691147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 40174691 - 40174633
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacag 285  Q
    ||||| ||||||| |  |||||||||||||||||||||| ||| || ||||||||||||    
T  40174691 ttgagtttatctactaacataagttttgtgagactgtttgggataacttatgaaaacag 40174633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 1137820 - 1137760
Alignment:
Q  252 ttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||| |||||||||||||| ||||||||||| ||||  ||| |||||||||| |||||||    
T  1137820 ttgtgacactgtttaggagaacttatgaaaacatcttatgaca-tgttcataagttgttttc 1137760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 21043197 - 21043257
Alignment:
Q  252 ttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||||||||| ||||| |||||| ||||||||||  |||  |||||||||||||||||    
T  21043197 ttgtgagactgtttgggagaggttatggaaacagcttatgaca-cgttcataagctgttttc 21043257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 326
Target Start/End: Complemental strand, 24169391 - 24169298
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    ||||||| ||||||||||||||||||||| |||  ||||| || | |||| ||||||  ||||| |||||||| | ||||| | ||||| ||||    
T  24169391 ttatctactggcataagttttgtgagactatttgagagaacttttaaaaatagcttatgacatttttcataagattttttcaacttattttcat 24169298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 313
Target Start/End: Complemental strand, 25571412 - 25571308
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    |||| ||||||| || || ||||| ||||||| || ||||||||   ||| |||||||||||||| ||||| |||||| |||  | | ||||||||||||    
T  25571412 cctgtttggattggcttatttgagtttatctactgacataagttacatgaaactgtttaggagaacttatggaaacagtttatgata-tgttcataagct 25571314  T
Q  308 gttttc 313  Q
    ||||||    
T  25571313 gttttc 25571308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 29126180 - 29126220
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataa 367  Q
    |||||||||||||||||| |||||||||||||  |||||||    
T  29126180 cttgtttggattggcttatttgagcttatctaccggcataa 29126220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 35571553 - 35571653
Alignment:
Q  213 ttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||||| || || ||||| ||||||| | |||||||||||||| ||  |||| |||||| || | |||||||||||  ||| ||||||| ||||| |||    
T  35571553 ttggattggcttatttgagcttatctactagcataagttttgtgggatagtttgggagaacttttaaaaacagcttattacactgttcatgagctggttt 35571652  T
Q  313 c 313  Q
    |    
T  35571653 c 35571653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 40830966 - 40831029
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatga-aaacagcttac 290  Q
    ||||| |||||||||| |||||||||||||||||||||  | |||| |||||| |||||||||||    
T  40830966 ttgagcttatctattg-cataagttttgtgagactgttcggaagaaattatgagaaacagcttac 40831029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 303
Target Start/End: Complemental strand, 55437230 - 55437134
Alignment:
Q  207 acctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcata 303  Q
    ||||| ||||||| || || ||||| ||||||| || |||||||||||||| | |||||   |||| ||||||||||| ||||  || |||||||||    
T  55437230 acctgtttggattggcttatttgagtttatctactgccataagttttgtgaaattgtttgaaagaacttatgaaaacaacttatgacgttgttcata 55437134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 326
Target Start/End: Complemental strand, 24748 - 24656
Alignment:
Q  234 tatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    |||||||||||||| ||||||||||||||||| |||||| |||| |||||||||||  ||||| |||| |||||| ||||  ||||| |||||    
T  24748 tatctattggcatatgttttgtgagactgtttgggagaacttatcaaaacagcttatgacattcttcaaaagctgctttcagtttatgctcat 24656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 28763485 - 28763417
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    |||||||||||||||||||||| |||||| |||||||||||||||| |||| | |||||||||| ||||    
T  28763485 cataagttttgtgagactgtttgggagaacttatgaaaacagcttataacaattttcataagctttttt 28763417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 313
Target Start/End: Original strand, 31716163 - 31716249
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||| |||||||||||||||  |||| ||||||||||| |||||| || |||||||||||||  ||||| |||||||||| |||||    
T  31716163 ttgagcttatctattggcatattttttttgagactgtttcggagaacttttgaaaacagcttatgacattcttcataagcttttttc 31716249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 326
Target Start/End: Original strand, 43045642 - 43045760
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    |||| ||||||| || || || || ||||||| | ||||||| ||||||||||||||| |||||  ||||||||||||||||||||| | || |||||||    
T  43045642 cctgtttggattggcttatttaagcttatctactagcataagatttgtgagactgttttggagatcttatgaaaacagcttacaacaattttaataagct 43045741  T
Q  308 gttttcgatttattctcat 326  Q
     ||||| | ||||| ||||    
T  43045742 tttttcaacttattttcat 43045760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 26771398 - 26771337
Alignment:
Q  228 tgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    |||| |||||||  |||||||||||||||||||||||| |||||| ||||||||||||||||    
T  26771398 tgagcttatctacgggcataagttttgtgagactgtttgggagaacttatgaaaacagctta 26771337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 9130236 - 9130292
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataaattttgtgagactatt 383  Q
    |||||||||||| ||||| ||||||||||||| |||||||| |||||||||||||||    
T  9130236 cttgtttggattagcttatttgagcttatctactggcataagttttgtgagactatt 9130292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 43717855 - 43717907
Alignment:
Q  331 tttggattggcttaattgagcttatctattggcataaattttgtgagactatt 383  Q
    |||||||||||||| |||||||||||||||| ||||| |||||||||||||||    
T  43717855 tttggattggcttatttgagcttatctattgacataagttttgtgagactatt 43717907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 43717856 - 43717928
Alignment:
Q  213 ttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacag 285  Q
    ||||||| || || ||||| |||||||||| |||||||||||||||||| ||| |||||| ||||||||||||    
T  43717856 ttggattggcttatttgagcttatctattgacataagttttgtgagactatttgggagaacttatgaaaacag 43717928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 30251371 - 30251470
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    |||| ||||||| || || ||||| ||||||| || ||||||||| |||||||||||| |||||| ||| ||||||||||||   |||| ||||||||||    
T  30251371 cctgtttggattggcttatttgagcttatctactgacataagtttcgtgagactgtttgggagaacttacgaaaacagcttattgcatttttcataagct 30251470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 27028965 - 27028879
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||| ||||| | |||||||||||| |||||| ||||| |||||| || |||||||||||||  ||||| |||||||||| |||||    
T  27028965 ttgagtttatccactggcataagtttagtgagattgtttgggagaaattctgaaaacagcttaggacatttttcataagctattttc 27028879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 32840942 - 32841008
Alignment:
Q  247 aagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||| |||||||||| |||||| ||||||||||| ||||  |||||||||||||| |||||||    
T  32840942 aagttttgcgagactgtttgggagaacttatgaaaacaacttatgacattgttcataagttgttttc 32841008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 18591909 - 18591998
Alignment:
Q  224 taattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||| ||||||||||| ||||||||| ||||||||||| |||||| |||| | |||| ||||| | |||||| |||| || |||||    
T  18591909 taattgagcttatctattggtataagttttatgagactgtttgggagaacttattataacaacttacgaaattgtttataaactattttc 18591998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 35749503 - 35749592
Alignment:
Q  224 taattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||| |||||||||| ||||||||||| ||| ||||||  ||||| |||||||||||||||  | |||| ||||||| || |||||    
T  35749503 taattgagcttatctattgacataagttttgcgaggctgtttgagagaacttatgaaaacagcttgtagcatttttcataaacttttttc 35749592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 38648482 - 38648425
Alignment:
Q  230 agattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagct 287  Q
    |||||||||| || |||||||||||||||||||||| |||||  ||||||||||||||    
T  38648482 agattatctactgacataagttttgtgagactgtttgggagaccttatgaaaacagct 38648425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 44792809 - 44792756
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||    
T  44792809 cttgtttggattggcttatttgagcttatctactgggataaattatgtgagact 44792756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 1930163 - 1930083
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||| || |||||||||||||| | | ||| |||||| || ||||||||| |||  ||||||||||||||||||||||    
T  1930163 ttatctactgacataagttttgtgacattatttgggagaacttgtgaaaacagtttatgacattgttcataagctgttttc 1930083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 12976363 - 12976260
Alignment:
Q  210 tgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgt 309  Q
    ||||||| || || || ||||| ||||||| | ||||||| ||||||||||||||||| |||| |||||| ||||||||  |||| | |||| ||||| |    
T  12976363 tgcttggtttggcttatttgagcttatctactagcataaggtttgtgagactgtttagtagaacttatgagaacagcttctaacaattttcaaaagcttt 12976264  T
Q  310 tttc 313  Q
    ||||    
T  12976263 tttc 12976260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 36963273 - 36963324
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||||| ||||||| ||||| |||||||| ||||||||||||    
T  36963273 tgtttggattggcttatttgagctaatctactggcataagttttgtgagact 36963324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 36963276 - 36963351
Alignment:
Q  213 ttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctt 288  Q
    ||||||| || || ||||| | ||||| ||||||||||||||||||||||||| |||||| |||  ||||||||||    
T  36963276 ttggattggcttatttgagctaatctactggcataagttttgtgagactgtttgggagaacttacaaaaacagctt 36963351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 326
Target Start/End: Original strand, 35643930 - 35644023
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    ||||||| |||||||| |||||||||||||||| ||| || ||||||||| || |||  ||| | |||||||||| ||||| | ||||| ||||    
T  35643930 ttatctactggcataatttttgtgagactgtttgggataacttatgaaaatagtttatgacaattttcataagcttttttcaacttattttcat 35644023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 13958005 - 13958049
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttg 373  Q
    |||||||||||||||| ||||| |||||||||||||||| |||||    
T  13958005 tgtttggattggcttacttgagtttatctattggcataagttttg 13958049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 1058013 - 1058088
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcat 302  Q
    ||||| ||||||| |  |||||||||||||||||||||| |||||| || ||||||| |||||  ||||| |||||    
T  1058013 ttgagcttatctacttacataagttttgtgagactgtttgggagaacttttgaaaactgcttatgacatttttcat 1058088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 1113142 - 1113107
Alignment:
Q  277 tgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||||||||||| ||||||||||||||||||||||    
T  1113142 tgaaaacagcttaaaacattgttcataagctgtttt 1113107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 6882044 - 6882001
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagct 287  Q
    |||||||||||||||||||||| ||||||  |||||||||||||    
T  6882044 cataagttttgtgagactgtttgggagaacctatgaaaacagct 6882001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 18591895 - 18591946
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||| ||||| ||||||||||||||||||||| |||| |||| |||||||    
T  18591895 tgtttgaattggtttaattgagcttatctattggtataagttttatgagact 18591946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 30251373 - 30251424
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||||| ||||||||||||| || ||||| ||| ||||||||    
T  30251373 tgtttggattggcttatttgagcttatctactgacataagtttcgtgagact 30251424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 35643907 - 35643958
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||| ||||||||||| ||| ||||||||| |||||||| ||||||||||||    
T  35643907 tgttgggattggcttatttgggcttatctactggcataatttttgtgagact 35643958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 35534549 - 35534611
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| ||||||| |  ||||||||||||||||||||||  ||||| || |||||||||||||    
T  35534549 ttgagcttatctactaacataagttttgtgagactgtttgagagaacttgtgaaaacagctta 35534611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 35869946 - 35869904
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagt 250  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||    
T  35869946 cctgtttggatttgactatttgagattatctattggcataagt 35869904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 7514681 - 7514628
Alignment:
Q  258 gactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttt 311  Q
    |||||||| |||||| || ||||| ||||| | |||||||||||||||||||||    
T  7514681 gactgtttgggagaacttgtgaaagcagctgataacattgttcataagctgttt 7514628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 10758210 - 10758255
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||    
T  10758210 cataagttttgtgagactgtttgatagaatttatgaaaacagctta 10758255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 12851279 - 12851223
Alignment:
Q  257 agactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcg 314  Q
    ||||||||| ||| || |||||||||||||||| |||| |||||||||| ||||||||    
T  12851279 agactgtttgggaaaacttatgaaaacagcttataaca-tgttcataagatgttttcg 12851223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 27754520 - 27754479
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacag 285  Q
    |||||||||||||||||| ||| |||||| ||||||||||||    
T  27754520 cataagttttgtgagactatttgggagaacttatgaaaacag 27754479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 40859736 - 40859808
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatt 317  Q
    ||||||||||||||| |||||| |||| | ||||||||||||||||  ||| | |||||||| |||||| ||||    
T  40859736 cataagttttgtgaggctgttttggag-acttatgaaaacagcttatgacaattttcataaggtgttttggatt 40859808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 2487970 - 2488029
Alignment:
Q  252 ttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    |||||||||||||| |||||| ||||||||||| |||| |||| |||||| || |||||||    
T  2487970 ttgtgagactgtttgggagaacttatgaaaacaacttataaca-tgttcaaaaactgtttt 2488029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 9130241 - 9130289
Alignment:
Q  213 ttggatttgcctaattgagattatctattggcataagttttgtgagact 261  Q
    ||||||| || || ||||| ||||||| |||||||||||||||||||||    
T  9130241 ttggattagcttatttgagcttatctactggcataagttttgtgagact 9130289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 18133772 - 18133704
Alignment:
Q  245 ataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||||||||||||||||| |||||  || ||||| ||||||| |||| | |||| ||||| |||||    
T  18133772 ataagttttgtgagactgtttgggagagcttgtgaaatcagcttataacaattttcacaagcttttttc 18133704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 38602478 - 38602430
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgag 377  Q
    ||||||||||| |||| ||||||||||||| || ||||| |||||||||    
T  38602478 tgtttggattgacttatttgagcttatctactgacataagttttgtgag 38602430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 40157662 - 40157622
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaat 369  Q
    |||||||||| ||||||||||| |||||||| |||||||||    
T  40157662 tgtttggattagcttaattgagtttatctataggcataaat 40157622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 41589720 - 41589640
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    ||||| || |||| || |||||| ||| ||||||||||| |||||| ||||||||||| |||| |||| | |||| |||||    
T  41589720 ttgagcttgtctactgacataagctttttgagactgttttggagaacttatgaaaacaacttataacaattttcaaaagct 41589640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 48)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 10640106 - 10640007
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    |||| ||||||| || || ||||| ||||||| || |||||||||||||| | ||||| |||||| ||||||||||||||||  ||||| ||||||||||    
T  10640106 cctgtttggattagcttatttgagtttatctactgacataagttttgtgatattgtttgggagaacttatgaaaacagcttatgacatttttcataagct 10640007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 238 - 313
Target Start/End: Complemental strand, 39248221 - 39248147
Alignment:
Q  238 tattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||| ||||||||||||||||||||||| |||||| |||| |||||||||||  || |||||||||||||||||||    
T  39248221 tattagcataagttttgtgagactgtttgggagaacttataaaaacagcttatgac-ttgttcataagctgttttc 39248147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 7985103 - 7985017
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||||||||| ||||||||| ||||||||||| ||| |||||  ||| |||||||||||   || |||||||||||||||||||    
T  7985103 ttgagattatctactggcataagctttgtgagactatttgggagagcttaagaaaacagcttgtgacgttgttcataagctgttttc 7985017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 305
Target Start/End: Original strand, 12433090 - 12433187
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataag 305  Q
    |||| ||||||| || || ||||  |||| || ||||||| ||||||||||| ||||| |||||||||||||||| ||||||| |||||| |||||||    
T  12433090 cctgtttggattggcttatttgaacttatttactggcataggttttgtgagattgtttgggagaagttatgaaaatagcttacgacattgatcataag 12433187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 304
Target Start/End: Complemental strand, 11700310 - 11700219
Alignment:
Q  213 ttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataa 304  Q
    |||||||||| || ||||| ||||| | |||||||||||||||||||||||||   |||| ||||| ||||| ||||  |||||||||||||    
T  11700310 ttggatttgcttatttgagcttatccactggcataagttttgtgagactgtttcacagaacttatggaaacaacttatgacattgttcataa 11700219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 42100462 - 42100411
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||| ||||    
T  42100462 tgtttggatgggcttatttgagcttatctattggcataaattttgtgtgact 42100411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 7808611 - 7808553
Alignment:
Q  255 tgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||||||| |||||  ||||||||| |||||| |||||||||||||||||||||||    
T  7808611 tgagactgtttgggagagcttatgaaaatagcttataacattgttcataagctgttttc 7808553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 16457935 - 16458001
Alignment:
Q  247 aagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||||||||||||||| |||||| ||||||||||||||||  ||| | |||||||||| |||||    
T  16457935 aagttttgtgagactgtttgggagaacttatgaaaacagcttatgacagttttcataagctcttttc 16458001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 16937799 - 16937881
Alignment:
Q  207 acctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| ||||||| || || ||||| ||||||| | ||||||||||||||||| ||||| | |||| ||||||||||||||||    
T  16937799 acctgtttggattggcttatttgagcttatctactagcataagttttgtgagagtgtttggaagaacttatgaaaacagctta 16937881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 19460330 - 19460407
Alignment:
Q  234 tatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttt 311  Q
    |||||| |||||||||||| ||||||||||||||||||| || || ||||| ||||  | ||| ||||||||||||||    
T  19460330 tatctactggcataagtttagtgagactgtttaggagaacttttggaaacaacttatgatatttttcataagctgttt 19460407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 9202684 - 9202768
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttt 311  Q
    ||||| ||||||  ||||||||||||||| ||||| ||| ||| || | ||| ||||||||||  ||||||||||||||||||||    
T  9202684 ttgagcttatctcctggcataagttttgtaagactatttcggaaaactaatggaaacagcttatgacattgttcataagctgttt 9202768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 18853119 - 18853076
Alignment:
Q  252 ttgtgagactgtttaggagaagttatgaaaacagcttacaacat 295  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  18853119 ttgtgagactttttaggagaagttatgaaaacagcttacgacat 18853076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 42582354 - 42582417
Alignment:
Q  249 gttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    |||||||||  |||||| |||||| |||||| ||||||||| |||||||||||||| |||||||    
T  42582354 gttttgtgatgctgttttggagaacttatgagaacagcttataacattgttcataaactgtttt 42582417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 6096675 - 6096598
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttagga-gaagttatgaaaacagcttacaacattgttcataagctgtt 310  Q
    ||||||| ||||||||||||||||||||| ||||||| ||| ||| | |||||||||   |||||||||||||||||||    
T  6096675 ttatctactggcataagttttgtgagact-tttaggaagaacttacgtaaacagcttgtgacattgttcataagctgtt 6096598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 9107224 - 9107162
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| ||||||| || |||||||||||||||| ||||| |||||| | ||||||||||||||    
T  9107224 ttgagtttatctagtgacataagttttgtgagaatgtttgggagaactcatgaaaacagctta 9107162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 326
Target Start/End: Complemental strand, 12425707 - 12425606
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagt--tatgaaaacagcttacaacattgttcataagctgttttcgatttattctc 324  Q
    ||||| ||||||| || |||||||||||||||||||||| |||||| |  |||||||||| | || ||||||||  ||||| ||||||| | ||||| ||    
T  12425707 ttgagcttatctactgtcataagttttgtgagactgtttgggagaacttatatgaaaacaacctaaaacattgtcaataagttgttttcaacttattttc 12425608  T
Q  325 at 326  Q
    ||    
T  12425607 at 12425606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 34102249 - 34102311
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| ||| ||||||||||||||||||||| ||||||| || ||| ||||||||| ||||||    
T  34102249 ttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagctta 34102311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 39105599 - 39105513
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttagg-agaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||| |||||||  || ||||||||| ||||||| ||| || |||| ||||||||||||||||  |||||||||||||||| ||||    
T  39105599 ttgagtttatctaggggtataagttttatgagacttttttgggagaatttatgaaaacagcttatgacattgttcataagctatttt 39105513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 39154960 - 39155002
Alignment:
Q  247 aagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  39154960 aagttttgtgagacagtttgggagaagttatgaaaacagctta 39155002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 16937802 - 16937851
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgaga 378  Q
    |||||||||||||||| ||||||||||||| | |||||| ||||||||||    
T  16937802 tgtttggattggcttatttgagcttatctactagcataagttttgtgaga 16937851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 31038418 - 31038333
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||| |||||||  |||||||||||||||| ||||||| ||| || |||| |||| ||||||  ||||| |||||||||| ||||    
T  31038418 ttgagcttatctaccggcataagttttgtgatactgttttggacaacttataaaaatagcttatgacatttttcataagctttttt 31038333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 31047642 - 31047557
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||| |||||||  |||||||||||||||| ||||||| ||| || |||| |||| ||||||  ||||| |||||||||| ||||    
T  31047642 ttgagcttatctaccggcataagttttgtgatactgttttggacaacttataaaaatagcttatgacatttttcataagctttttt 31047557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 41981645 - 41981698
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagc 286  Q
    ||||||| | |||| |||||||||||||||||| |||||| |||||||||||||    
T  41981645 ttatctactagcattagttttgtgagactgtttgggagaacttatgaaaacagc 41981698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 43301026 - 43300953
Alignment:
Q  213 ttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagc 286  Q
    ||||||| || || ||||| |||| || ||||||||||||| ||||||||||  ||||||||||| ||||||||    
T  43301026 ttggattggcttatttgagcttatataatggcataagttttatgagactgttggggagaagttataaaaacagc 43300953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 35445780 - 35445848
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacat 295  Q
    ||||| ||||||| || |||||||||||||||||| |||   |||| |||||||||||||||| |||||    
T  35445780 ttgagtttatctactgacataagttttgtgagactctttgacagaatttatgaaaacagcttataacat 35445848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 42583295 - 42583363
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||| ||||| ||| |||||| |||||| | |||||||||| ||| ||||||||||||||| ||||||    
T  42583295 cataaattttgcgaggctgtttgggagaactaatgaaaacagtttataacattgttcataagttgtttt 42583363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 11700313 - 11700262
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||| ||||| ||||||||||| | |||||||| ||||||||||||    
T  11700313 tgtttggatttgcttatttgagcttatccactggcataagttttgtgagact 11700262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 15015977 - 15015922
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaa 282  Q
    ||||| ||||||| || |||||| ||||||||||||||| |||||| |||||||||    
T  15015977 ttgagcttatctactgacataagctttgtgagactgtttgggagaacttatgaaaa 15015922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 29925955 - 29925900
Alignment:
Q  247 aagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcat 302  Q
    |||||||||||||| |||| |||||| ||||||||||||||||  ||| |||||||    
T  29925955 aagttttgtgagaccgtttgggagaacttatgaaaacagcttatgacaatgttcat 29925900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 32859673 - 32859736
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    ||||| |||||||| ||||||| | |||| ||||||||||| ||||| ||||| ||||||||||    
T  32859673 cataaattttgtgacactgtttggaagaatttatgaaaacaacttacgacatttttcataagct 32859736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 32861845 - 32861908
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    ||||| |||||||| ||||||| | |||| ||||||||||| ||||| ||||| ||||||||||    
T  32861845 cataaattttgtgacactgtttggaagaatttatgaaaacaacttacgacatttttcataagct 32861908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 32862629 - 32862692
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    ||||| |||||||| ||||||| | |||| ||||||||||| ||||| ||||| ||||||||||    
T  32862629 cataaattttgtgacactgtttggaagaatttatgaaaacaacttacgacatttttcataagct 32862692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 43301029 - 43300978
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||||| |||||||||| || |||||||| |||| |||||||    
T  43301029 tgtttggattggcttatttgagcttatataatggcataagttttatgagact 43300978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 1464972 - 1465042
Alignment:
Q  243 gcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||||| || |||||||||  |||||| ||||||||||||||||   ||||| ||||||| |||||||    
T  1464972 gcataagttctgcgagactgttcgggagaacttatgaaaacagcttatggcattgctcataagttgttttc 1465042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 3520693 - 3520631
Alignment:
Q  245 ataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    ||||||| ||||||||||||| |||||| ||||||||||| ||||  || || ||||||||||    
T  3520693 ataagttgtgtgagactgtttgggagaacttatgaaaacatcttatgacttttttcataagct 3520631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 41419445 - 41419367
Alignment:
Q  235 atctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||| || ||||| |||||||||| ||||| ||| || || |||||||||||||  ||||||||||| |||| |||||    
T  41419445 atctactgacataaattttgtgagattgtttgggataacttgtgaaaacagcttatgacattgttcatgagctattttc 41419367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 41419471 - 41419421
Alignment:
Q  328 ttgtttggattggcttaattgagcttatctattggcataaattttgtgaga 378  Q
    |||||||||||| |||| ||||||| ||||| || ||||||||||||||||    
T  41419471 ttgtttggattgacttatttgagctaatctactgacataaattttgtgaga 41419421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 41534590 - 41534540
Alignment:
Q  328 ttgtttggattggcttaattgagcttatctattggcataaattttgtgaga 378  Q
    |||||||||||| |||| ||||||| ||||| || ||||||||||||||||    
T  41534590 ttgtttggattgacttatttgagctaatctactgacataaattttgtgaga 41534540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 42100445 - 42100359
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||| |||||||||||||||| ||||||| |||||| |  ||||| || |||||| ||||||  |||| ||||| ||| |||||||    
T  42100445 ttgagcttatctattggcataaattttgtgtgactgtgtgagagaacttgtgaaaatagcttatgacatagttcaaaaggtgttttc 42100359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 12857255 - 12857304
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataaattttgtga 376  Q
    |||||||||||||| ||| |||||||||||||||| | ||| ||||||||    
T  12857255 cttgtttggattggtttatttgagcttatctattgacgtaagttttgtga 12857304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 32942711 - 32942650
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataag 305  Q
    ||||||||||||  |||||||| |||||| ||||||| ||||||||  ||||| ||||||||    
T  32942711 cataagttttgtttgactgtttgggagaatttatgaatacagcttatgacatttttcataag 32942650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 40426899 - 40426814
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||| ||||||| || ||||| |||||||||||||||| || |   ||||||||||||||||   |||| |||||||||| ||||    
T  40426899 ttgagcttatctaatgacataaattttgtgagactgtttgggggtgcttatgaaaacagcttatgccatttttcataagctttttt 40426814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 5377114 - 5377154
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataa 367  Q
    |||||| ||||||||||| |||||||||||||||| |||||    
T  5377114 cttgttcggattggcttatttgagcttatctattgacataa 5377154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 367
Target Start/End: Original strand, 10771809 - 10771845
Alignment:
Q  331 tttggattggcttaattgagcttatctattggcataa 367  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  10771809 tttggattggcttatttgagcttatctactggcataa 10771845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 11064783 - 11064727
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttc 300  Q
    |||||||||||||||| |||||  ||||| ||||||||| ||||||  |||||||||    
T  11064783 cataagttttgtgagattgtttgagagaacttatgaaaatagcttatgacattgttc 11064727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 22209746 - 22209794
Alignment:
Q  332 ttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||| |||| ||||||||||||| |||||||| |||| |||||||    
T  22209746 ttggattgacttatttgagcttatctactggcataagttttctgagact 22209794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 32372740 - 32372708
Alignment:
Q  233 ttatctattggcataagttttgtgagactgttt 265  Q
    ||||||| |||||||||||||||||||||||||    
T  32372740 ttatctactggcataagttttgtgagactgttt 32372708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 32941597 - 32941545
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacag 285  Q
    ||||||| || |||||||| |||||||| |||| |||||| ||||||||||||    
T  32941597 ttatctactgacataagttctgtgagaccgtttgggagaacttatgaaaacag 32941545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 48)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 42659147 - 42659209
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| |||| || ||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  42659147 ttgagcttatttactggcataagttttgtgagactgtttgggagaagttttgaaaacagctta 42659209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 36534885 - 36534816
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||||||||||||||||| ||| || |||||||||||||||| || ||||||||||| || |||||    
T  36534885 cataagttttgtgagactgtttgggataacttatgaaaacagcttataaaattgttcataatctattttc 36534816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 313
Target Start/End: Complemental strand, 42458078 - 42457996
Alignment:
Q  231 gattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||| || ||||||||||||||||||| |||||||||||  ||||||||||| |||| |||||| |  ||||| |||||||    
T  42458078 gattatttactggcataagttttgtgagagtgtttaggagagtttatgaaaacaacttaaaacattttcaataagttgttttc 42457996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 16451239 - 16451166
Alignment:
Q  240 ttggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||| ||||||| |||||||| |||| |||||| ||||||||||| ||||  ||||||||||| ||||||||||    
T  16451239 ttggaataagttctgtgagaccgtttgggagaacttatgaaaacaacttatgacattgttcatgagctgttttc 16451166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 18066256 - 18066176
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||| || |||||||||||||| ||||||| | | || ||||||||||||||||  |||||| ||||||||| |||||    
T  18066256 ttatctactgacataagttttgtgaaactgttttgtacaacttatgaaaacagcttatgacattgctcataagctattttc 18066176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 7928217 - 7928268
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||||| |||||||||||||||| ||||| || |||||||||    
T  7928217 tgtttggattggcttatttgagcttatctattgacataagttgtgtgagact 7928268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 15305825 - 15305778
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtga 376  Q
    |||||||||||||||| |||||||||||||||| ||||| ||||||||    
T  15305825 tgtttggattggcttatttgagcttatctattgacataagttttgtga 15305778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 21828090 - 21828039
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaaca 284  Q
    ||||||| ||||||||||||||||||||||||||| |||| || ||||||||    
T  21828090 ttatctactggcataagttttgtgagactgtttagaagaacttttgaaaaca 21828039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 43279469 - 43279551
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttag--gagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    ||||||| | ||||||||||||||||||||||| |  ||||| ||||||||||||||||  ||| | |||||||||| |||||    
T  43279469 ttatctactagcataagttttgtgagactgtttgggagagaatttatgaaaacagcttatgacaattttcataagcttttttc 43279551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 313
Target Start/End: Original strand, 7928215 - 7928321
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta-caacattgttcataagc 306  Q
    |||| ||||||| || || ||||| |||||||||| |||||||| ||||||||||||    |||| || |||||||||||||   ||||||||||||||     
T  7928215 cctgtttggattggcttatttgagcttatctattgacataagttgtgtgagactgttagaaagaacttttgaaaacagcttatggacattgttcataagt 7928314  T
Q  307 tgttttc 313  Q
    |||||||    
T  7928315 tgttttc 7928321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 15757594 - 15757656
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| |||| || |||||||||||||||||||||| || |||||| |||||||||| |||||    
T  15757594 ttgagcttatttactggcataagttttgtgagactgcttgggagaatttatgaaaactgctta 15757656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 326
Target Start/End: Original strand, 40682348 - 40682430
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcgatttattctcat 326  Q
    |||||||||||||||| ||||| |||||| || | |||| ||||||  |||||||||||||| ||||||| | ||||| ||||    
T  40682348 cataagttttgtgagattgtttgggagaacttgttaaaatagcttatgacattgttcataagttgttttcaacttattttcat 40682430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 449981 - 449896
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||| ||||||| | ||||||||||| ||||| ||||| |||| | || |||||||||||||  ||||| |||||||||| ||||    
T  449981 ttgagcttatctactagcataagttttatgagattgtttgggaggacttttgaaaacagcttatgacatttttcataagctatttt 449896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 750804 - 750719
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||| ||||||  ||||||| ||||||||||| |||||   |||| ||||||||| |||| |  |||||||||||||||||||||    
T  750804 ttgagtttatctcctggcatatgttttgtgagagtgtttgcaagaacttatgaaaagagctaatgacattgttcataagctgtttt 750719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 3312230 - 3312177
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    |||||||||||||||||| ||||||||||||| || | ||| ||||||||||||    
T  3312230 cttgtttggattggcttatttgagcttatctactgacgtaagttttgtgagact 3312177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 7035520 - 7035589
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||||||||||||||||| | |||| ||||| ||||||||||  |||  ||||||||| |||||||    
T  7035520 cataagttttgtgagactgttttgaagaacttatggaaacagcttatgacacagttcataaggtgttttc 7035589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 30331879 - 30331830
Alignment:
Q  233 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaa 282  Q
    ||||||| || |||||||||||||||||||||| |||||| |||||||||    
T  30331879 ttatctactgacataagttttgtgagactgtttgggagaacttatgaaaa 30331830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 9174963 - 9174911
Alignment:
Q  213 ttggatttgcctaattgagattatctattggcataagttttgtgagactgttt 265  Q
    |||||||| | || ||||| ||||||||||||||||||| |||||||||||||    
T  9174963 ttggatttacttatttgagcttatctattggcataagttatgtgagactgttt 9174911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 24101045 - 24100977
Alignment:
Q  244 cataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    |||||||||||||||||||||| |||||| ||||| ||||| ||||  ||| | |||||||||| ||||    
T  24101045 cataagttttgtgagactgtttgggagaacttatggaaacaccttatgacaatattcataagctttttt 24100977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 41851669 - 41851589
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    ||||| |||||||||| || |||||||||||||||| || |||||| ||||| ||||| ||||  ||| | ||||||||||    
T  41851669 ttgagcttatctattgacaaaagttttgtgagactgattgggagaatttatggaaacaacttatgacacttttcataagct 41851589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 43570514 - 43570462
Alignment:
Q  260 ctgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||| ||||||| ||||||||||||||||  |||||||||||||||| ||||    
T  43570514 ctgttaaggagaacttatgaaaacagcttatgacattgttcataagctttttt 43570462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 4607041 - 4606978
Alignment:
Q  245 ataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctg 308  Q
    ||||||||||||||||| ||| |||||| || |||||||| ||||  ||||||||||| |||||    
T  4607041 ataagttttgtgagactatttgggagaacttgtgaaaacaacttatgacattgttcatgagctg 4606978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 32837431 - 32837388
Alignment:
Q  252 ttgtgagactgtttaggagaagttatgaaaacagcttacaacat 295  Q
    |||||||||||||| |||||| |||||||||||||||| |||||    
T  32837431 ttgtgagactgtttgggagaacttatgaaaacagcttataacat 32837388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 42659130 - 42659181
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    ||||||| |||||||| |||||||||| || |||||||| ||||||||||||    
T  42659130 tgtttgggttggcttatttgagcttatttactggcataagttttgtgagact 42659181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 44590172 - 44590097
Alignment:
Q  213 ttggatttgcctaattgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctt 288  Q
    ||||||| || || ||||| |||||||| | ||||||||||||||||| ||||   |||| |||||||||||||||    
T  44590172 ttggattggcttatttgagtttatctatagacataagttttgtgagaccgtttgaaagaacttatgaaaacagctt 44590097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 32592706 - 32592640
Alignment:
Q  241 tggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    |||||||||||||| ||| || ||| |||||| ||||||||| ||||||| ||| | ||||||||||    
T  32592706 tggcataagttttgggagtctatttgggagaacttatgaaaatagcttacgacaattttcataagct 32592640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 312
Target Start/End: Complemental strand, 36043991 - 36043953
Alignment:
Q  274 ttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  36043991 ttatgaaaacaacttacgacattgttcataagctgtttt 36043953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 41812048 - 41812114
Alignment:
Q  247 aagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||| ||||| |||||| |||||| || |||||||||||||  ||||| |||||||||| |||||    
T  41812048 aagtttagtgaggctgtttgggagaacttttgaaaacagcttatgacatttttcataagcttttttc 41812114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 42419927 - 42419865
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 289  Q
    ||||| ||||||  || |||||||||| ||||||||||| |||||| ||| ||||||||||||    
T  42419927 ttgagtttatcttctgacataagttttttgagactgtttgggagaacttacgaaaacagctta 42419865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 2142772 - 2142731
Alignment:
Q  243 gcataagttttgtgagactgtttaggagaagttatgaaaaca 284  Q
    ||||||||||| ||||||||||| |||||| |||||||||||    
T  2142772 gcataagttttatgagactgtttgggagaacttatgaaaaca 2142731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 5745744 - 5745801
Alignment:
Q  250 ttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagct 307  Q
    ||||| |||||||||||| |||| ||||||||||||||||  ||| | ||||||||||    
T  5745744 ttttgagagactgtttagaagaatttatgaaaacagcttatgacaattttcataagct 5745801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 5902511 - 5902571
Alignment:
Q  252 ttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||||||||| | |||| ||||||||||||||||  ||| ||||||||| ||||||||    
T  5902511 ttgtgagactgtttggaagaacttatgaaaacagcttatgaca-tgttcataaactgttttc 5902571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 9174964 - 9174915
Alignment:
Q  331 tttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    ||||||||  |||| |||||||||||||||||||||| || |||||||||    
T  9174964 tttggatttacttatttgagcttatctattggcataagttatgtgagact 9174915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 15305827 - 15305770
Alignment:
Q  208 cctgcttggatttgcctaattgagattatctattggcataagttttgtgagactgttt 265  Q
    |||| ||||||| || || ||||| |||||||||| |||||||||||||| |||||||    
T  15305827 cctgtttggattggcttatttgagcttatctattgacataagttttgtgaaactgttt 15305770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 18179083 - 18178998
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||| ||||||| |  ||||||||||||||||| | | | ||||| ||| ||||||| ||||| ||||  |||||||||||||||    
T  18179083 ttgagcttatctactaacataagttttgtgagaccgctcaagagaacttacgaaaacaacttacgacatcattcataagctgtttt 18178998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 19608569 - 19608654
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||| ||||||| || |||| ||||| |||||||||||  ||||| |||| || ||||||||  ||||| |||||||||| ||||    
T  19608569 ttgagtttatctactgacataggttttatgagactgtttgcgagaacttataaacacagcttatgacattcttcataagctatttt 19608654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 28677626 - 28677682
Alignment:
Q  257 agactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttcg 314  Q
    ||||||||| |||||| ||||||||||||||||  ||||| |||||||| ||||||||    
T  28677626 agactgtttgggagaacttatgaaaacagcttatgacatt-ttcataagttgttttcg 28677682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 30331904 - 30331851
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    ||||||||||||| |||| || |||||||||| || ||||| ||||||||||||    
T  30331904 cttgtttggattgacttatttcagcttatctactgacataagttttgtgagact 30331851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 38916261 - 38916330
Alignment:
Q  243 gcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||| ||||||||||  |||||||||||| ||||||||| |||||||  || | |||||||||| ||||    
T  38916261 gcataggttttgtgaggttgtttaggagaacttatgaaaaaagcttacgccacttttcataagctttttt 38916330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 368
Target Start/End: Original strand, 40837354 - 40837395
Alignment:
Q  327 cttgtttggattggcttaattgagcttatctattggcataaa 368  Q
    |||||||||||||||||| ||||||||||||| || ||||||    
T  40837354 cttgtttggattggcttatttgagcttatctactgacataaa 40837395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 41293120 - 41293185
Alignment:
Q  248 agttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc 313  Q
    |||||||||||||| ||| |||||| |||| |||||||||||  |||||   ||||||||||||||    
T  41293120 agttttgtgagactatttgggagaacttataaaaacagcttatgacatttcgcataagctgttttc 41293185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 366
Target Start/End: Original strand, 42868400 - 42868437
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcata 366  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  42868400 tgtttggattgccttatttgagcttatctattggcata 42868437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 389828 - 389788
Alignment:
Q  245 ataagttttgtgagactgtttag-gagaagttatgaaaaca 284  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  389828 ataagttttgtgagactgtttagagagaaattatgaaaaca 389788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 15757576 - 15757628
Alignment:
Q  328 ttgtttggattggcttaattgagcttatctattggcataaattttgtgagact 380  Q
    ||||||||| ||| ||| |||||||||| || |||||||| ||||||||||||    
T  15757576 ttgtttggaatggtttatttgagcttatttactggcataagttttgtgagact 15757628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 26143561 - 26143605
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattggcataaattttg 373  Q
    |||||||||||||||  ||||||||||||| || |||||||||||    
T  26143561 tgtttggattggcttgtttgagcttatctactgacataaattttg 26143605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 361
Target Start/End: Original strand, 40672750 - 40672782
Alignment:
Q  329 tgtttggattggcttaattgagcttatctattg 361  Q
    ||||||||||| |||||||||||||||||||||    
T  40672750 tgtttggattgacttaattgagcttatctattg 40672782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 42868417 - 42868469
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatga 279  Q
    ||||| ||||||||||||||| |||| |||| ||||||| |||||| ||||||    
T  42868417 ttgagcttatctattggcatacgtttcgtgacactgtttgggagaacttatga 42868469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 44590173 - 44590125
Alignment:
Q  331 tttggattggcttaattgagcttatctattggcataaattttgtgagac 379  Q
    |||||||||||||| ||||| |||||||| | ||||| |||||||||||    
T  44590173 tttggattggcttatttgagtttatctatagacataagttttgtgagac 44590125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 918 - 1003
Alignment:
Q  227 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagcttacaacattgttcataagctgtttt 312  Q
    ||||| |||||||  |||||||||||||||| ||||||| ||| || |||| |||| ||||||  ||||| |||||||||| ||||    
T  918 ttgagcttatctaccggcataagttttgtgatactgttttggacaacttataaaaatagcttatgacatttttcataagctttttt 1003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University