View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6574_low_7 (Length: 397)

Name: NF6574_low_7
Description: NF6574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6574_low_7
NF6574_low_7
[»] chr5 (19 HSPs)
chr5 (1-332)||(8338734-8339063)
chr5 (345-397)||(36732990-36733042)
chr5 (341-397)||(33149686-33149742)
chr5 (346-397)||(36875651-36875702)
chr5 (343-397)||(14831812-14831866)
chr5 (348-397)||(18520932-18520981)
chr5 (344-397)||(35785198-35785251)
chr5 (345-397)||(2740274-2740326)
chr5 (342-397)||(40145404-40145459)
chr5 (343-397)||(28177773-28177827)
chr5 (343-397)||(42414350-42414404)
chr5 (345-397)||(3921313-3921365)
chr5 (345-397)||(13811652-13811704)
chr5 (345-397)||(35943940-35943992)
chr5 (344-393)||(26720515-26720564)
chr5 (344-393)||(26990264-26990313)
chr5 (345-397)||(2252216-2252268)
chr5 (345-397)||(6679698-6679750)
chr5 (345-397)||(20073564-20073616)
[»] chr2 (23 HSPs)
chr2 (345-397)||(7465783-7465835)
chr2 (345-397)||(17473020-17473072)
chr2 (345-397)||(9058480-9058532)
chr2 (345-397)||(33436148-33436200)
chr2 (348-397)||(28863458-28863507)
chr2 (344-397)||(40701477-40701530)
chr2 (345-397)||(5574536-5574588)
chr2 (341-397)||(28381703-28381759)
chr2 (345-397)||(30915463-30915515)
chr2 (345-397)||(33436211-33436263)
chr2 (343-397)||(13438341-13438395)
chr2 (343-397)||(19930868-19930922)
chr2 (343-397)||(27864702-27864756)
chr2 (343-397)||(40613950-40614004)
chr2 (345-397)||(10249430-10249482)
chr2 (345-397)||(32505696-32505748)
chr2 (344-397)||(4060684-4060737)
chr2 (346-391)||(41575138-41575183)
chr2 (345-397)||(38273190-38273242)
chr2 (345-397)||(38882862-38882913)
chr2 (343-397)||(43490119-43490173)
chr2 (345-390)||(20700815-20700860)
chr2 (345-397)||(26891552-26891604)
[»] chr3 (24 HSPs)
chr3 (342-397)||(53982008-53982063)
chr3 (345-397)||(11095401-11095453)
chr3 (345-397)||(49607414-49607466)
chr3 (344-397)||(33644199-33644252)
chr3 (345-397)||(54868943-54868995)
chr3 (350-397)||(52629305-52629352)
chr3 (345-397)||(8076393-8076445)
chr3 (345-397)||(14623887-14623939)
chr3 (345-397)||(24700002-24700054)
chr3 (341-397)||(26141580-26141636)
chr3 (345-397)||(27714939-27714991)
chr3 (345-397)||(33118899-33118951)
chr3 (346-397)||(31456690-31456741)
chr3 (345-396)||(41080709-41080759)
chr3 (345-397)||(8956762-8956814)
chr3 (345-397)||(17470405-17470457)
chr3 (345-397)||(35536626-35536678)
chr3 (345-397)||(36707472-36707524)
chr3 (349-393)||(48587143-48587187)
chr3 (344-397)||(30801781-30801834)
chr3 (344-397)||(45058601-45058653)
chr3 (345-397)||(36331426-36331478)
chr3 (345-397)||(47531865-47531917)
chr3 (345-397)||(51419408-51419460)
[»] chr4 (18 HSPs)
chr4 (344-397)||(6034043-6034096)
chr4 (344-397)||(11511510-11511563)
chr4 (345-397)||(480495-480547)
chr4 (345-397)||(24995155-24995207)
chr4 (345-389)||(29234301-29234345)
chr4 (345-397)||(48183097-48183149)
chr4 (345-397)||(50052476-50052528)
chr4 (343-397)||(3481652-3481706)
chr4 (344-397)||(50526219-50526272)
chr4 (344-397)||(54473581-54473634)
chr4 (345-397)||(23608235-23608287)
chr4 (345-397)||(29239886-29239938)
chr4 (345-397)||(41236347-41236399)
chr4 (343-397)||(40574777-40574831)
chr4 (345-397)||(42044415-42044467)
chr4 (345-397)||(55475191-55475243)
chr4 (344-397)||(31910191-31910244)
chr4 (345-397)||(19670764-19670816)
[»] chr1 (16 HSPs)
chr1 (344-397)||(9474924-9474977)
chr1 (345-397)||(2581915-2581967)
chr1 (343-397)||(47452368-47452422)
chr1 (345-397)||(3000319-3000371)
chr1 (342-397)||(27564783-27564838)
chr1 (344-397)||(48716330-48716383)
chr1 (345-397)||(38595154-38595206)
chr1 (345-397)||(41758805-41758857)
chr1 (345-397)||(51898731-51898783)
chr1 (343-397)||(37649196-37649250)
chr1 (344-397)||(50591048-50591101)
chr1 (345-397)||(8346436-8346488)
chr1 (345-397)||(32813247-32813299)
chr1 (345-397)||(38632369-38632421)
chr1 (345-397)||(23597139-23597191)
chr1 (345-397)||(50630458-50630510)
[»] chr8 (23 HSPs)
chr8 (341-397)||(34012344-34012400)
chr8 (343-397)||(504169-504223)
chr8 (343-397)||(15197331-15197385)
chr8 (345-397)||(1179988-1180040)
chr8 (345-397)||(12831047-12831099)
chr8 (341-397)||(20074982-20075038)
chr8 (342-397)||(23122645-23122700)
chr8 (343-397)||(43414629-43414683)
chr8 (344-397)||(40423991-40424044)
chr8 (345-397)||(14547922-14547974)
chr8 (345-397)||(37038479-37038531)
chr8 (346-397)||(5957831-5957882)
chr8 (344-393)||(15048233-15048282)
chr8 (345-393)||(4854915-4854963)
chr8 (345-397)||(16383377-16383429)
chr8 (345-397)||(30479522-30479574)
chr8 (345-397)||(34307216-34307268)
chr8 (345-397)||(44507135-44507187)
chr8 (350-397)||(10621135-10621182)
chr8 (346-384)||(9122196-9122234)
chr8 (345-397)||(10284679-10284731)
chr8 (345-397)||(24307629-24307681)
chr8 (345-397)||(24307841-24307893)
[»] chr7 (23 HSPs)
chr7 (345-397)||(4999562-4999614)
chr7 (343-397)||(35137531-35137585)
chr7 (345-397)||(3434562-3434614)
chr7 (345-397)||(7389389-7389441)
chr7 (345-393)||(8080435-8080483)
chr7 (345-397)||(36361961-36362013)
chr7 (343-397)||(19329840-19329894)
chr7 (345-394)||(11044188-11044237)
chr7 (344-397)||(38267039-38267092)
chr7 (345-397)||(35468903-35468955)
chr7 (345-397)||(36362026-36362078)
chr7 (348-397)||(3783998-3784047)
chr7 (345-386)||(38837217-38837258)
chr7 (345-397)||(19436235-19436287)
chr7 (345-397)||(22343361-22343413)
chr7 (345-397)||(40957707-40957759)
chr7 (343-397)||(8238210-8238265)
chr7 (343-397)||(21234399-21234453)
chr7 (343-397)||(31735882-31735936)
chr7 (345-397)||(10343611-10343663)
chr7 (345-397)||(38044197-38044249)
chr7 (345-393)||(41915741-41915789)
chr7 (345-397)||(46374850-46374902)
[»] chr6 (13 HSPs)
chr6 (341-397)||(32869674-32869730)
chr6 (348-397)||(22880706-22880755)
chr6 (343-397)||(17598552-17598606)
chr6 (345-397)||(29857827-29857879)
chr6 (343-397)||(31953078-31953132)
chr6 (344-397)||(15508072-15508125)
chr6 (344-397)||(31109448-31109501)
chr6 (345-397)||(6209513-6209565)
chr6 (345-397)||(15990090-15990142)
chr6 (345-397)||(30341408-30341460)
chr6 (345-397)||(31110807-31110859)
chr6 (345-397)||(11427616-11427670)
chr6 (345-397)||(31976248-31976300)
[»] scaffold0237 (1 HSPs)
scaffold0237 (345-397)||(4029-4081)
[»] scaffold1268 (1 HSPs)
scaffold1268 (343-397)||(977-1031)
[»] scaffold1267 (1 HSPs)
scaffold1267 (343-397)||(977-1031)
[»] scaffold0321 (1 HSPs)
scaffold0321 (345-397)||(10157-10209)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 8339063 - 8338734
Alignment:
Q  1 gaggaatgagaggatatggttcaaaacaccgtccggtaagtagctgattctgtcttcgttttcttcttcacccgttaccagttttcttcgtttggatgat 100  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8339063 gaggaatgaaaggatatggttcaaaacaccgtcgggtaagtagctgattctgtcttcgttttcttcttcacccgttaccagttttcttcgtttggatgat 8338964  T
Q  101 accaccattgtttctgcttgcttagttttggatctgttttggtcgttgccggttttctcagcaaagctacttgttttcaggcaagctagtgagttaagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||||||||||||||||||    
T  8338963 accaccattgtttctgcttgcttagttttggatctgttttggtcgttgccggtt---------------------ttcaggcaagctagtgagttaagtt 8338885  T
Q  201 tctctcacagactgtatctcccttaacaagagaaagagggaaaacaagctact-------------aagcttcttcaagagcagagtgagcagcccttac 287  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||| |||||||||    
T  8338884 tctctcacagacggtatctcccttaacaagagaaagagggaaaacaagctactaagcttcttcaagaagcttcttcaagagcagagtgagtagcccttac 8338785  T
Q  288 ctt------tctataccttcttttttccatttcttactagtttttcgtgcc 332  Q
    |||      ||||||||||||||||||||||||||||||||||||||||||    
T  8338784 ctttctatgtctataccttcttttttccatttcttactagtttttcgtgcc 8338734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 36733042 - 36732990
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36733042 gagtaatgatacatagacacccttaggtagcaatacaccctttgacacccaca 36732990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 397
Target Start/End: Complemental strand, 33149742 - 33149686
Alignment:
Q  341 ttatgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||||||| | | ||||||||||||||||||||||    
T  33149742 ttatgagtaatgatacatagacacccttaggtggtaatacaccctttgacacccaca 33149686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 346 - 397
Target Start/End: Complemental strand, 36875702 - 36875651
Alignment:
Q  346 agtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  36875702 agtaatgatacatagacacccttaggtggcaatacaccctttgacacccaca 36875651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 14831812 - 14831866
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  14831812 atgagtaatgatacatagacactcttaggtggcaatacaccctttgacacccaca 14831866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 18520981 - 18520932
Alignment:
Q  348 taatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  18520981 taatgatacatagacacccttaggtggcaatacaccctttgacacccaca 18520932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 35785198 - 35785251
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||||||| | |||||||||| |||||||||||||    
T  35785198 tgagtaatgatacatagacacccttaggtggcaatacaccttttgacacccaca 35785251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 2740274 - 2740326
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  2740274 gagtaatgatacatagacatccttaggtggcaatacaccctttgacacccaca 2740326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 342 - 397
Target Start/End: Original strand, 40145404 - 40145459
Alignment:
Q  342 tatgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||||||||| | |||||||||||||| ||| |||||    
T  40145404 tatgagtaatgatacatagacacccttaggtggcaatacaccctttaacatccaca 40145459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 28177773 - 28177827
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||| |||||||||||||| |||||| | ||||||||||||||||||||||||    
T  28177773 atgagttatgatacatagacatccttaggtggcaatacaccctttgacacccaca 28177827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 42414404 - 42414350
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||  ||| | ||||||||||||||||||||||||    
T  42414404 atgagtaatgatacatagacaccagtaggtggcaatacaccctttgacacccaca 42414350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 3921365 - 3921313
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||| |||||||||| | ||||||||||| ||||||||||||    
T  3921365 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccaca 3921313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 13811652 - 13811704
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||| ||||||||||||||||||| | |||||||| | |||||||||||||    
T  13811652 gagtaaagatacatagacacccttaggtggcaatacatcatttgacacccaca 13811704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 35943992 - 35943940
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| ||||||||||||||||||||| | |||||||| | |||||||||||||    
T  35943992 gagttatgatacatagacacccttaggtggcaatacatcatttgacacccaca 35943940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 26720515 - 26720564
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacc 393  Q
    ||||| |||||||||||||| |||||| | |||||||||||||| |||||    
T  26720515 tgagttatgatacatagacatccttaggtggcaatacaccctttaacacc 26720564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 26990264 - 26990313
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacc 393  Q
    ||||| |||||||||||||| |||||| | |||||||||||||| |||||    
T  26990264 tgagttatgatacatagacatccttaggtggcaatacaccctttaacacc 26990313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 2252268 - 2252216
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||| ||| |||||| | ||||||||||| ||||||||||||    
T  2252268 gagttatgatacataaacatccttaggtggcaatacaccccttgacacccaca 2252216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 6679698 - 6679750
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||||||| | |||| | |||||||||| |||||||||||||    
T  6679698 gagttatgatacatagacatctttaggtggcaatacaccttttgacacccaca 6679750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 20073616 - 20073564
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||| ||||||| | ||||||  |||||||||||||||||| ||||    
T  20073616 gagtaatgatatatagacatcattagatgacaatacaccctttgacactcaca 20073564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 7465835 - 7465783
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7465835 gagtaatgatacatagacacccttagatggcaatacaccctttgacacccaca 7465783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 17473020 - 17473072
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17473020 gagtaatgatacatagacacccttagatggcaatacaccctttgacacccaca 17473072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 9058480 - 9058532
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  9058480 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccaca 9058532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 33436200 - 33436148
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  33436200 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccaca 33436148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 28863458 - 28863507
Alignment:
Q  348 taatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  28863458 taatgatacatagacacccttaggtggcaatacaccctttgacacccaca 28863507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 40701477 - 40701530
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||||||| | |||||||||| |||||||||||||    
T  40701477 tgagtaatgatacatagacacccttaggtggcaatacaccttttgacacccaca 40701530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 5574588 - 5574536
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  5574588 gagtaatgatacatagacactcttaggtggcaatacaccctttgacacccaca 5574536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 397
Target Start/End: Complemental strand, 28381759 - 28381703
Alignment:
Q  341 ttatgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||||||| | |||||||||| || ||||||||||    
T  28381759 ttatgagtaatgatacatagacacccttaggtggcaatacacctttcgacacccaca 28381703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 30915463 - 30915515
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | ||||||||||||||||| ||||||    
T  30915463 gagtaatgatacatagacacccttaggtggcaatacaccctttgacccccaca 30915515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 33436211 - 33436263
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||||||||||    
T  33436211 gagtaatgatacatagacatccttagatggcaatacaccttttgacacccaca 33436263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 13438341 - 13438395
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||||| |  ||||||| |||||||||||||||    
T  13438341 atgagtaatgatacatagacacccttaggtgacaatacatcctttgacacccaca 13438395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 19930922 - 19930868
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| ||||||||||||||||||||||| | |||||||||||||||||| |||||    
T  19930922 atgaataatgatacatagacacccttaggtggcaatacaccctttgacatccaca 19930868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 27864702 - 27864756
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||||  | |||||||||||||||||| |||||    
T  27864702 atgagtaatgatacatagacacccttatgtggcaatacaccctttgacatccaca 27864756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 40614004 - 40613950
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||| |||||||||||||| |||||| | ||||||||||||||||||||||||    
T  40614004 atgagttatgatacatagacatccttaggtggcaatacaccctttgacacccaca 40613950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 10249482 - 10249430
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| |  ||||||||| |||||||||||||    
T  10249482 gagtaatgatacatagacacccttaggtgacaatacaccttttgacacccaca 10249430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 32505748 - 32505696
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| |  ||||||||| |||||||||||||    
T  32505748 gagtaatgatacatagacacccttaggtgacaatacaccttttgacacccaca 32505696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 4060684 - 4060737
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||||||| |  ||||||||| ||||||| |||||    
T  4060684 tgagtaatgatacatagacacccttaggtgacaatacaccttttgacatccaca 4060737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 41575138 - 41575183
Alignment:
Q  346 agtaatgatacatagacacccttagatagcaatacaccctttgaca 391  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||    
T  41575138 agtaatgatacatagacatccttagatggtaatacaccctttgaca 41575183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 38273242 - 38273190
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| ||||||||||||||  ||||||| |||||||||||||| |||||||||    
T  38273242 gagttatgatacatagacattcttagatggcaatacaccctttaacacccaca 38273190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 38882913 - 38882862
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | |||||| ||||||||||| |||||    
T  38882913 gagtaatgatacatagacacccttaggtggcaata-accctttgacatccaca 38882862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 43490119 - 43490173
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||| |||||||||| |||||||||| |  |||||||||| ||||||||||||    
T  43490119 atgagttatgatacataaacacccttaggtgacaatacaccccttgacacccaca 43490173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 20700815 - 20700860
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgac 390  Q
    ||||||||||||||||||| |||||  | |||||||||||||||||    
T  20700815 gagtaatgatacatagacatccttatgtggcaatacaccctttgac 20700860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 26891604 - 26891552
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| ||||||||||| ||||||||| | ||||||||||| | ||||||||||    
T  26891604 gagttatgatacatagccacccttaggtggcaatacacccctagacacccaca 26891552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 397
Target Start/End: Original strand, 53982008 - 53982063
Alignment:
Q  342 tatgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  53982008 tatgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccaca 53982063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 11095453 - 11095401
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  11095453 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccaca 11095401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 49607414 - 49607466
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  49607414 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccaca 49607466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 33644199 - 33644252
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||||| | | ||||||||||||||||||||||||    
T  33644199 tgagtaatgatacatagacacccttgggtggcaatacaccctttgacacccaca 33644252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 54868995 - 54868943
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | |||||||||| |||||||||||||    
T  54868995 gagtaatgatacatagacacccttaggtggcaatacaccttttgacacccaca 54868943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 350 - 397
Target Start/End: Original strand, 52629305 - 52629352
Alignment:
Q  350 atgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  52629305 atgatacatagacacccttaggtggcaatacaccctttgacacccaca 52629352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 8076393 - 8076445
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||| |||||||||| | ||| ||||||||||||||||||||    
T  8076393 gagtaatgatacataaacacccttaggtggcagtacaccctttgacacccaca 8076445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 14623939 - 14623887
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||| |||||| | ||||||||||| ||||||||||||    
T  14623939 gagtaatgatacatagacatccttaggtggcaatacaccccttgacacccaca 14623887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 24700054 - 24700002
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||| |||||| | |||||||||| |||||||||||||    
T  24700054 gagtaatgatacatagacatccttagttggcaatacaccttttgacacccaca 24700002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 341 - 397
Target Start/End: Complemental strand, 26141636 - 26141580
Alignment:
Q  341 ttatgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||| |||||||||||||| |||||| | |||||||||||||| |||||||||    
T  26141636 ttatgagttatgatacatagacatccttaggtggcaatacaccctttaacacccaca 26141580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 27714991 - 27714939
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||||||||    
T  27714991 gagtaatgatacatagacacctttaggtggtaatacaccctttgacacccaca 27714939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 33118951 - 33118899
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| ||||||||||||||||||||| |  |||||||||||||||||||||||    
T  33118951 gagttatgatacatagacacccttaggtgacaatacaccctttgacacccaca 33118899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 397
Target Start/End: Original strand, 31456690 - 31456741
Alignment:
Q  346 agtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  31456690 agtaatgatacatagacacccataggcggcaatacaccctttgacacccaca 31456741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 41080709 - 41080759
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccac 396  Q
    ||||||||||||||||||| |||||| |||||| ||||||||||||||||||    
T  41080709 gagtaatgatacatagacatccttag-tagcaaaacaccctttgacacccac 41080759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 8956762 - 8956814
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||| |||||  | |||||||| |||||||||||||||    
T  8956762 gagtaatgatacatagacatccttatgtggcaatacatcctttgacacccaca 8956814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 17470405 - 17470457
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||| |||| | |||||||||| ||| |||||||||    
T  17470405 gagtaatgatacatagacacctttaggtggcaatacaccttttaacacccaca 17470457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 35536626 - 35536678
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||| |||||  | |||||||||| |||||||||||||    
T  35536626 gagtaatgatacatagacatccttatgtggcaatacaccatttgacacccaca 35536678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 36707524 - 36707472
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||| |||||||| |  ||||||||||||||||| |||||    
T  36707524 gagtaatgatacatagatacccttaggtgacaatacaccctttgacatccaca 36707472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 48587187 - 48587143
Alignment:
Q  349 aatgatacatagacacccttagatagcaatacaccctttgacacc 393  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||    
T  48587187 aatgatacatagatacccttaggtggcaatacaccctttgacacc 48587143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 30801834 - 30801781
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||||||||||||||| |   |||||||||||||| |||||||    
T  30801834 tgagcaatgatacatagacacccttaggtgataatacaccctttgatacccaca 30801781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 45058653 - 45058601
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||| |||||||||| |||||||||| | ||||||||||| ||||||||||||    
T  45058653 tgagttatgatacataaacacccttaggtggcaatacaccc-ttgacacccaca 45058601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 36331478 - 36331426
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||| |||||||||||| ||||| ||||| |||||| |||||    
T  36331478 gagttatgatacataaacacccttagatggcaatgcaccccttgacatccaca 36331426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 47531865 - 47531917
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||||||| |||||||| |||||||||| ||| ||| |||||    
T  47531865 gagttatgatacatagacatccttagatggcaatacaccttttaacatccaca 47531917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 51419460 - 51419408
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||||||| ||||||||  ||||||| ||||| |||||||||    
T  51419460 gagttatgatacatagacatccttagatgacaatacatcctttaacacccaca 51419408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 6034043 - 6034096
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  6034043 tgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccaca 6034096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 11511563 - 11511510
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  11511563 tgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccaca 11511510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 480547 - 480495
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  480547 gagtaatgatacatagacacccttaggtgacaatacaccctttgacacccaca 480495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 24995207 - 24995155
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  24995207 gagtaatgatatatggacacccttagatggcaatacaccctttgacacccaca 24995155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 389
Target Start/End: Complemental strand, 29234345 - 29234301
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttga 389  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  29234345 gagtaatgatacatagacacccttagatggcaatacaccctttga 29234301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 48183149 - 48183097
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||  | ||||||||||||||||||||||||    
T  48183149 gagtaatgatacatagacacccttacgtggcaatacaccctttgacacccaca 48183097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 50052528 - 50052476
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  50052528 gagtaatgatacatagacatccttaggtggcaatacaccctttgacacccaca 50052476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 3481652 - 3481706
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||| |||| | ||||||||| ||||||||||||||    
T  3481652 atgagtaatgatacatagacacctttaggtggcaatacactctttgacacccaca 3481706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 50526272 - 50526219
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||| | |||| | ||||||||||||||||||||||||    
T  50526272 tgagtaatgatacatagacatctttaggtggcaatacaccctttgacacccaca 50526219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 54473634 - 54473581
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||||||| |  ||||||||| |||||||||||||    
T  54473634 tgagtaatgatacatagacacccttaggtgacaatacaccatttgacacccaca 54473581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 23608235 - 23608287
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||| ||||||||||||||||  ||||||||| |||||||||||||    
T  23608235 gagtaatgatatatagacacccttagatgacaatacaccatttgacacccaca 23608287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 29239886 - 29239938
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | |||||||||| ||||||| |||||    
T  29239886 gagtaatgatacatagacacccttaggtggcaatacaccatttgacatccaca 29239938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 41236347 - 41236399
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | |||||||||| ||||||| |||||    
T  41236347 gagtaatgatacatagacacccttaggtggcaatacaccttttgacatccaca 41236399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 40574777 - 40574831
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||| |||||||||||||| |||||| | | ||||||||||||||||||||||    
T  40574777 atgagttatgatacatagacatccttaggtggtaatacaccctttgacacccaca 40574831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 42044467 - 42044415
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | |||||||| ||||  |||||||||    
T  42044467 gagtaatgatacatagacacccttaggtggcaatacatccttgtacacccaca 42044415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 55475191 - 55475243
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||| ||| |||||| | ||||||||||||||||||||||||    
T  55475191 gagttatgatacataaacatccttaggtggcaatacaccctttgacacccaca 55475243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 31910191 - 31910244
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||| |||||||||||||| |||||| |  |||||||| ||||||||||||||    
T  31910191 tgagttatgatacatagacatccttaggtgacaatacactctttgacacccaca 31910244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 19670816 - 19670764
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||| |||||||||| | ||||||||||| ||||||| ||||    
T  19670816 gagttatgatacataaacacccttaggtggcaatacaccccttgacactcaca 19670764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 9474977 - 9474924
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  9474977 tgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccaca 9474924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 2581915 - 2581967
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  2581915 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccaca 2581967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 47452422 - 47452368
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||||||    
T  47452422 atgagtaatgatacatagacacccttaggtggtaatacaccctttgacacccaca 47452368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 3000319 - 3000371
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||| |||||||||| | ||||||||||||||||||||||||    
T  3000319 gagtaatgatacataaacacccttaggtggcaatacaccctttgacacccaca 3000371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 342 - 397
Target Start/End: Complemental strand, 27564838 - 27564783
Alignment:
Q  342 tatgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||| |||||| | |||||||||| |||||||||||||    
T  27564838 tatgagtaatgatacatagacatccttaggtggcaatacaccttttgacacccaca 27564783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 48716383 - 48716330
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||||| |||||    
T  48716383 tgagtaatgatacatagacacccttaggtggcaatacaccatttgacatccaca 48716330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 38595154 - 38595206
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||| ||||| |||| | ||||||||||||||||||||||||    
T  38595154 gagtaatgatacataaacacctttaggtggcaatacaccctttgacacccaca 38595206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 41758805 - 41758857
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||| ||| || |||||||||||||||||| |||||    
T  41758805 gagtaatgatacatagacaccattaaatggcaatacaccctttgacaaccaca 41758857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 51898783 - 51898731
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||| | |||| | ||||||||||||||||||||||||    
T  51898783 gagtaatgatacatagacatctttaggtggcaatacaccctttgacacccaca 51898731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 37649196 - 37649250
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||| | |||| | ||||||||| ||||||||||||||    
T  37649196 atgagtaatgatacatagacatctttaggtggcaatacactctttgacacccaca 37649250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 50591101 - 50591048
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||| |||||||||| |||||||||| | ||||||||||| ||||||||||||    
T  50591101 tgagttatgatacataaacacccttaggtggcaatacaccccttgacacccaca 50591048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 8346488 - 8346436
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||| |||| |||| | |||||||||| |||||||||||||    
T  8346488 gagtaatgatacatagtcacctttaggtggcaatacaccatttgacacccaca 8346436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 32813247 - 32813299
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||||||| |||||| | |||||||||||||| |||||||||    
T  32813247 gagttatgatacatagacatccttaggtggcaatacaccctttaacacccaca 32813299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 38632421 - 38632369
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | |||||||||| ||| ||| |||||    
T  38632421 gagtaatgatacatagacacccttaggtggcaatacaccttttaacatccaca 38632369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 23597191 - 23597139
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||| | |||| | ||||||||| |||||| |||||||    
T  23597191 gagtaatgatacatagacatcattaggtggcaatacactctttgatacccaca 23597139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 50630458 - 50630510
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||| |||||||| | |||||||| ||||||  |||||||    
T  50630458 gagtaatgatacatagatacccttaggtggcaatacatcctttgttacccaca 50630510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 397
Target Start/End: Complemental strand, 34012400 - 34012344
Alignment:
Q  341 ttatgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||||||| | | ||||||||||||||||||||||    
T  34012400 ttatgagtaatgatacatagacacccttaggtggtaatacaccctttgacacccaca 34012344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 504223 - 504169
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||||||||||    
T  504223 atgagtaatgatacatagacacccttaggtggcaatacaccttttgacacccaca 504169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 15197331 - 15197385
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  15197331 atgagtaatgatacatagacactcttaggtggcaatacaccctttgacacccaca 15197385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 1180040 - 1179988
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | | ||||||||||||||||||||||    
T  1180040 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccaca 1179988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 12831047 - 12831099
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  12831047 gagtaatgatacatagacacccttaggtgacaatacaccctttgacacccaca 12831099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 397
Target Start/End: Complemental strand, 20075038 - 20074982
Alignment:
Q  341 ttatgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||| |||||| | ||||||||| ||||||||||||||    
T  20075038 ttatgagtaatgatacatagacatccttaggtggcaatacactctttgacacccaca 20074982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 342 - 397
Target Start/End: Complemental strand, 23122700 - 23122645
Alignment:
Q  342 tatgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||||||||  | |||||||||| |||||||||||||    
T  23122700 tatgagtaatgatacatagacacccttaagtggcaatacaccttttgacacccaca 23122645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 43414683 - 43414629
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||| |||||||||||||| |||||||| |||| |||||||||||||||||||    
T  43414683 atgagttatgatacatagacatccttagatggcaacacaccctttgacacccaca 43414629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 40424044 - 40423991
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||| |||||||| | |||||||||||||||||| |||||    
T  40424044 tgagtaatgatacatagatacccttaggtggcaatacaccctttgacatccaca 40423991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 14547922 - 14547974
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||| ||||||||||||||||||| | |||||||||| |||||||||||||    
T  14547922 gagtaaagatacatagacacccttaggtggcaatacaccatttgacacccaca 14547974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 37038479 - 37038531
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||| | |||| | ||||||||||||||||||||||||    
T  37038479 gagtaatgatacatagacatctttaggtggcaatacaccctttgacacccaca 37038531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 397
Target Start/End: Original strand, 5957831 - 5957882
Alignment:
Q  346 agtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||  ||||| | ||||||||||||||||||||||||    
T  5957831 agtaatgatacatagacattcttaggtggcaatacaccctttgacacccaca 5957882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 393
Target Start/End: Complemental strand, 15048282 - 15048233
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacc 393  Q
    ||||| |||||||||||||| |||||| | ||||||||||||||||||||    
T  15048282 tgagttatgatacatagacatccttaggtggcaatacaccctttgacacc 15048233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 4854963 - 4854915
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacc 393  Q
    ||||||||||||||||||| |||||| | |||||||||||||| |||||    
T  4854963 gagtaatgatacatagacatccttaggtggcaatacaccctttaacacc 4854915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 16383377 - 16383429
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||| |||||||||| | ||||||||||| ||||||||||||    
T  16383377 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccaca 16383429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 30479574 - 30479522
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||| |||||||||| | |||||||||||||||||| |||||    
T  30479574 gagttatgatacataaacacccttaggtggcaatacaccctttgacatccaca 30479522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 34307216 - 34307268
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||| |||||||||| | ||||||||||| ||||||||||||    
T  34307216 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccaca 34307268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 44507187 - 44507135
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | | ||||||| |||| |||||||||    
T  44507187 gagtaatgatacatagacacccttaggtggtaatacactctttaacacccaca 44507135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 397
Target Start/End: Complemental strand, 10621182 - 10621135
Alignment:
Q  350 atgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||| |||||| | | ||||||||||||||||||||||    
T  10621182 atgatacatagacatccttaggtggtaatacaccctttgacacccaca 10621135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 384
Target Start/End: Original strand, 9122196 - 9122234
Alignment:
Q  346 agtaatgatacatagacacccttagatagcaatacaccc 384  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  9122196 agtaatgatacatagacacccttaggtggcaatacaccc 9122234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 10284731 - 10284679
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| ||||||||||||||||||||  |  |||||||| ||||||||||||||    
T  10284731 gagttatgatacatagacacccttaagtgacaatacactctttgacacccaca 10284679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 24307629 - 24307681
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||| |||||||||| | |||||||| || ||||||||||||    
T  24307629 gagttatgatacataaacacccttaggtggcaatacatccattgacacccaca 24307681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 24307893 - 24307841
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||| |||||||||| | |||||||| || ||||||||||||    
T  24307893 gagttatgatacataaacacccttaggtggcaatacatcccttgacacccaca 24307841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 4999614 - 4999562
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  4999614 gagtaatgatacatagacacccttagatggcaatacaccttttgacacccaca 4999562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 35137531 - 35137585
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  35137531 atgagtaatgataaatagacacccttaggtggcaatacaccctttgacacccaca 35137585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 3434562 - 3434614
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  3434562 gagtaatgatacatagacatccttaggtggcaatacaccctttgacacccaca 3434614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 7389389 - 7389441
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  7389389 gagtaatgatacatagacacccttaggtggcaatacactctttgacacccaca 7389441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 8080483 - 8080435
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacc 393  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  8080483 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacc 8080435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 36362013 - 36361961
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | |||||||| |||||||||||||||    
T  36362013 gagtaatgatacatagacacccttaggtggcaatacatcctttgacacccaca 36361961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 19329840 - 19329894
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||| |||||| | |||||||||| |||||||||||||    
T  19329840 atgagtaatgatacatagacatccttaggtggcaatacaccttttgacacccaca 19329894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 11044188 - 11044237
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacaccc 394  Q
    |||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  11044188 gagtaatgatacatagacacccttaggtggcaatacatcctttgacaccc 11044237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 38267039 - 38267092
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||||||  |  |||||||||||||||||||||||    
T  38267039 tgagtaatgatacatagacacccttatgtgacaatacaccctttgacacccaca 38267092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 35468955 - 35468903
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||| |||||||| |||||||| | |||||||||||||    
T  35468955 gagtaatgatacatagacatccttagatggcaatacatcatttgacacccaca 35468903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 36362026 - 36362078
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | | |||||| |||||||||||||||    
T  36362026 gagtaatgatacatagacacccttaggtggtaatacatcctttgacacccaca 36362078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 3783998 - 3784047
Alignment:
Q  348 taatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||| | |||||||| | |||||||||||||    
T  3783998 taatgatacatagacacccttaggtggcaatacatcttttgacacccaca 3784047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 38837217 - 38837258
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctt 386  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  38837217 gagtaatgatacatagacacccttaggtggcaatacaccctt 38837258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 19436287 - 19436235
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||| |||||| |  ||||||||| |||||||||||||    
T  19436287 gagtaatgatacatagacatccttaggtgacaatacaccttttgacacccaca 19436235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 22343361 - 22343413
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||| |||||||||| | ||||||||||| ||||||||||||    
T  22343361 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccaca 22343413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 40957707 - 40957759
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||| ||||| | ||||||||| |||||| |||||||    
T  40957707 gagtaatgatacatagacactcttaggtggcaatacactctttgatacccaca 40957759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 8238210 - 8238265
Alignment:
Q  343 atgagtaatgatacatagacaccct-tagatagcaatacaccctttgacacccaca 397  Q
    |||||| |||||||||| ||||||| ||| | ||||||||||||||||||||||||    
T  8238210 atgagttatgatacataaacaccctgtaggtggcaatacaccctttgacacccaca 8238265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 21234399 - 21234453
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||| |||||||||||||| |||||| |  |||||||||||||||||| ||||    
T  21234399 atgagttatgatacatagacatccttaggtgacaatacaccctttgacactcaca 21234453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 31735882 - 31735936
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||| |||||||||||||| |||||| | ||||||||| |||| |||||||||    
T  31735882 atgagttatgatacatagacatccttaggtggcaatacactctttaacacccaca 31735936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 10343663 - 10343611
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | | |||||||   ||||||||||||    
T  10343663 gagtaatgatacatagacacccttaggtggaaatacacatcttgacacccaca 10343611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 38044197 - 38044249
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||| |||||||||| | ||||||||||| |||||| |||||    
T  38044197 gagttatgatacataaacacccttaggtggcaatacaccccttgacatccaca 38044249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 41915741 - 41915789
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacc 393  Q
    |||| |||||||||| |||||||||| | ||||||||||| ||||||||    
T  41915741 gagttatgatacataaacacccttaggtggcaatacaccccttgacacc 41915789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 46374902 - 46374850
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||||||| |||||| | |||| ||||||||| |||||||||    
T  46374902 gagttatgatacatagacatccttaggtggcaacacaccctttaacacccaca 46374850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 397
Target Start/End: Original strand, 32869674 - 32869730
Alignment:
Q  341 ttatgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||    
T  32869674 ttatgagtaaagatacatagacacccttaggtggcaatacaccctttgacacccaca 32869730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 22880755 - 22880706
Alignment:
Q  348 taatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  22880755 taatgatacatagacacccttaggtggcaatacaccctttgacacccaca 22880706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 17598552 - 17598606
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||||| | |||||||| | |||||||||||||    
T  17598552 atgagtaatgatacatagacacccttaggtggcaatacatcttttgacacccaca 17598606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 29857827 - 29857879
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||| |||||| |||||||||| ||| |||||||||    
T  29857827 gagtaatgatacatagacacctttagatggcaatacaccttttaacacccaca 29857879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 31953132 - 31953078
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||| ||||||| |||||| | ||||||||||| ||||||||||||    
T  31953132 atgagtaatgatagatagacatccttaggtggcaatacaccccttgacacccaca 31953078  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 15508125 - 15508072
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||| |||||||||| |||||||||| | ||||||||||| ||||||||||||    
T  15508125 tgagttatgatacataaacacccttaggtggcaatacaccccttgacacccaca 15508072  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 31109501 - 31109448
Alignment:
Q  344 tgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||  |||||||||||||| | |||||||||||||||||| |||||    
T  31109501 tgagtaatgattaatagacacccttaggtggcaatacaccctttgacatccaca 31109448  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 6209565 - 6209513
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||||||| | |||||||||  |||||||| ||||    
T  6209565 gagtaatgatacatagacacccttaggtggcaatacactatttgacactcaca 6209513  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 15990142 - 15990090
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||| |||||||||| | ||||||||||| ||||||||||||    
T  15990142 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccaca 15990090  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 30341460 - 30341408
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||| |||||||||| | ||||||||||| ||||||||||||    
T  30341460 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccaca 30341408  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 31110859 - 31110807
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||||||| |||||| | ||||||||||||||||||| ||||    
T  31110859 gagttatgatacatagacatccttaggtggcaatacaccctttgacactcaca 31110807  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 11427616 - 11427670
Alignment:
Q  345 gagtaatgatacatagacacc--cttagatagcaatacaccctttgacacccaca 397  Q
    |||||||||||||||||||||  ||||| | |||||||| |||||||||||||||    
T  11427616 gagtaatgatacatagacaccctcttaggtggcaatacatcctttgacacccaca 11427670  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 31976248 - 31976300
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||||||| |||||| | |||||| ||||||| |||||||||    
T  31976248 gagttatgatacatagacatccttaggtggcaatataccctttaacacccaca 31976300  T

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Target: scaffold0237 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 4029 - 4081
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||| |||||| |||||||||| ||| |||||||||    
T  4029 gagtaatgatacatagacacctttagatggcaatacaccttttaacacccaca 4081  T

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Target: scaffold1268 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 1031 - 977
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||| | |||| | |||||||||||||| ||| |||||    
T  1031 atgagtaatgatacatagacatctttaggtggcaatacaccctttaacatccaca 977  T

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Target: scaffold1267 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 1031 - 977
Alignment:
Q  343 atgagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    ||||||||||||||||||||| | |||| | |||||||||||||| ||| |||||    
T  1031 atgagtaatgatacatagacatctttaggtggcaatacaccctttaacatccaca 977  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 10209 - 10157
Alignment:
Q  345 gagtaatgatacatagacacccttagatagcaatacaccctttgacacccaca 397  Q
    |||| |||||||||||||||| |||| | |||||||| ||||||||| |||||    
T  10209 gagttatgatacatagacacctttaggtggcaatacatcctttgacatccaca 10157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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