View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6575_high_1 (Length: 839)

Name: NF6575_high_1
Description: NF6575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6575_high_1
NF6575_high_1
[»] chr4 (26 HSPs)
chr4 (300-839)||(9603823-9604352)
chr4 (12-250)||(9603530-9603768)
chr4 (569-672)||(2491653-2491756)
chr4 (569-675)||(50908771-50908877)
chr4 (13-203)||(9582932-9583136)
chr4 (13-203)||(9588627-9588831)
chr4 (569-675)||(50908584-50908690)
chr4 (569-657)||(11983982-11984070)
chr4 (12-118)||(9594727-9594833)
chr4 (569-675)||(44468995-44469101)
chr4 (569-641)||(27529986-27530058)
chr4 (365-441)||(30441368-30441444)
chr4 (342-405)||(782390-782453)
chr4 (569-676)||(11130715-11130822)
chr4 (569-671)||(11983840-11983941)
chr4 (342-442)||(7257305-7257405)
chr4 (388-443)||(10156765-10156820)
chr4 (570-669)||(14203929-14204028)
chr4 (620-675)||(25447187-25447242)
chr4 (596-674)||(14204555-14204632)
chr4 (478-537)||(909047-909107)
chr4 (342-398)||(3664230-3664286)
chr4 (569-645)||(10819621-10819696)
chr4 (576-675)||(11983688-11983787)
chr4 (342-404)||(55301174-55301235)
chr4 (584-669)||(37082433-37082518)
[»] chr8 (11 HSPs)
chr8 (569-675)||(32094989-32095095)
chr8 (346-418)||(44173167-44173239)
chr8 (342-419)||(9045697-9045774)
chr8 (342-444)||(27157688-27157790)
chr8 (569-676)||(32094784-32094891)
chr8 (569-647)||(21598707-21598785)
chr8 (354-444)||(39039698-39039788)
chr8 (596-674)||(37745142-37745220)
chr8 (365-418)||(39555878-39555931)
chr8 (357-436)||(37507539-37507617)
chr8 (357-412)||(40899651-40899706)
[»] chr5 (24 HSPs)
chr5 (569-671)||(22497242-22497344)
chr5 (342-444)||(35323597-35323699)
chr5 (578-675)||(13861234-13861331)
chr5 (569-675)||(31289767-31289873)
chr5 (342-441)||(21039236-21039335)
chr5 (569-647)||(36914071-36914149)
chr5 (570-675)||(40744518-40744623)
chr5 (471-534)||(22431260-22431323)
chr5 (346-445)||(31859712-31859811)
chr5 (357-443)||(17223062-17223148)
chr5 (585-674)||(22499274-22499363)
chr5 (365-444)||(13271486-13271565)
chr5 (620-675)||(22497359-22497414)
chr5 (628-675)||(22498634-22498681)
chr5 (630-675)||(17761778-17761823)
chr5 (341-415)||(18401235-18401310)
chr5 (632-675)||(22498877-22498920)
chr5 (569-615)||(11562977-11563023)
chr5 (344-442)||(14872588-14872686)
chr5 (569-675)||(42859090-42859196)
chr5 (365-418)||(8217125-8217178)
chr5 (570-615)||(22497542-22497587)
chr5 (357-398)||(28503275-28503315)
chr5 (584-669)||(34992093-34992178)
[»] chr3 (26 HSPs)
chr3 (569-675)||(32981548-32981654)
chr3 (355-444)||(7925337-7925426)
chr3 (569-675)||(496000-496106)
chr3 (587-675)||(13661618-13661706)
chr3 (575-674)||(13662066-13662165)
chr3 (569-674)||(12012249-12012354)
chr3 (575-675)||(13662377-13662477)
chr3 (569-676)||(13661704-13661811)
chr3 (342-436)||(25123224-25123318)
chr3 (569-675)||(31721465-31721571)
chr3 (345-442)||(33513396-33513492)
chr3 (342-442)||(36692887-36692987)
chr3 (354-442)||(23771674-23771764)
chr3 (374-440)||(26665523-26665589)
chr3 (569-641)||(496128-496200)
chr3 (571-639)||(12012651-12012719)
chr3 (342-397)||(36679272-36679327)
chr3 (342-416)||(32808564-32808638)
chr3 (577-675)||(32981239-32981336)
chr3 (625-666)||(4148022-4148063)
chr3 (625-666)||(4148858-4148899)
chr3 (625-666)||(4164627-4164668)
chr3 (584-669)||(4333914-4333999)
chr3 (342-410)||(14338928-14338994)
chr3 (584-669)||(21631163-21631248)
chr3 (569-658)||(32981679-32981767)
[»] chr7 (16 HSPs)
chr7 (569-674)||(29530584-29530689)
chr7 (344-442)||(40256804-40256902)
chr7 (569-675)||(29237313-29237417)
chr7 (569-672)||(44602643-44602746)
chr7 (569-634)||(12308016-12308081)
chr7 (570-669)||(7668111-7668210)
chr7 (592-675)||(29530454-29530537)
chr7 (596-669)||(19628881-19628954)
chr7 (354-443)||(44453593-44453682)
chr7 (596-669)||(46735898-46735971)
chr7 (569-640)||(44602886-44602958)
chr7 (342-444)||(2391578-2391680)
chr7 (357-443)||(22713451-22713536)
chr7 (365-431)||(31459414-31459480)
chr7 (357-418)||(3255158-3255219)
chr7 (584-669)||(46369842-46369927)
[»] chr6 (14 HSPs)
chr6 (300-442)||(7591053-7591196)
chr6 (342-424)||(989501-989583)
chr6 (342-441)||(6978498-6978598)
chr6 (343-427)||(33450815-33450900)
chr6 (355-438)||(20207190-20207273)
chr6 (355-438)||(22101213-22101296)
chr6 (342-444)||(30522093-30522195)
chr6 (358-415)||(13214195-13214252)
chr6 (584-668)||(12275074-12275158)
chr6 (569-675)||(14911391-14911500)
chr6 (357-444)||(29389192-29389278)
chr6 (354-445)||(32826710-32826801)
chr6 (445-538)||(33623937-33624031)
chr6 (592-661)||(12260033-12260102)
[»] chr1 (16 HSPs)
chr1 (354-442)||(7439097-7439185)
chr1 (354-436)||(31577996-31578077)
chr1 (574-672)||(29699996-29700095)
chr1 (342-444)||(31767924-31768027)
chr1 (574-675)||(43763181-43763276)
chr1 (357-445)||(38091249-38091337)
chr1 (592-675)||(39313407-39313490)
chr1 (569-675)||(34903160-34903266)
chr1 (569-638)||(46997666-46997735)
chr1 (575-674)||(18208574-18208673)
chr1 (472-537)||(26247253-26247319)
chr1 (570-674)||(29700492-29700593)
chr1 (350-427)||(32556519-32556596)
chr1 (569-675)||(43473105-43473211)
chr1 (584-669)||(41770963-41771048)
chr1 (357-444)||(51906955-51907044)
[»] chr2 (10 HSPs)
chr2 (344-443)||(37267707-37267806)
chr2 (342-442)||(5867900-5867999)
chr2 (343-439)||(24166791-24166887)
chr2 (342-428)||(10696366-10696452)
chr2 (575-645)||(38858164-38858234)
chr2 (596-669)||(348297-348370)
chr2 (343-407)||(45203216-45203280)
chr2 (357-408)||(13378426-13378477)
chr2 (569-675)||(23212694-23212800)
chr2 (357-442)||(43050109-43050193)


Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 300 - 839
Target Start/End: Original strand, 9603823 - 9604352
Alignment:
Q  300 catcctattagtttctcaagcgtctatgtagttcagattttagcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatc 399  Q
    |||||||| ||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||     
T  9603823 catcctatgagtttctcaagcgtctatgtagttcggattttagaataaaaaccccataaaacctccaaaaatacgttaaaatatttcagattttagaatt 9603922  T
Q  400 tgaataggacgcgcgagaaggtcatagggtgggaaaaataatggctaatttcatggatgactatcaatgaaagagtacaaaatcttatatcgacaatatt 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603923 tgaataggacgcgcgagaaggtcatagggtgggaaaaataatggctaatttcatggatgactatcaatgaaagagtacaaaatcttatatcgacaatatt 9604022  T
Q  500 attctagattcttcctaacaactagtgagtcaccaatccataattaaatcttt---nnnnnnnnnnnnnnnnttttgcaaaatgaccattatgcatataa 596  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||                   |||||||||||||||| |||||||||||    
T  9604023 attctagattcttcctaacaactagtgagtcaccaatccgtaatt-aatctttaaaaaacaaataaattaaattttgcaaaatgaccactatgcatataa 9604121  T
Q  597 aattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtagatggattgtacacaacattaata 696  Q
    ||||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |            | ||||||||||    
T  9604122 aattaaaaagatcgtgaattttcataaggacgattatgaaattttgttgtatttcgatttttatagattgttagga------------agaacattaata 9604209  T
Q  697 agaacattgatgagctcaagacaccaattcacatgtaaagcatgccactctaattgtgttgtgagactgctgcaaattcttacacaagaaaaagatgaca 796  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9604210 agaacattgatgagctcaagacatcaattcacatgtaaagcatgccactctaattgtgttgtgagactgctgcaaattcctacacaagaaaaagatgaca 9604309  T
Q  797 tgatgatggttgctcaaataaaatcaaattaaattgatcaatt 839  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9604310 tgatgatggttgctcaaataaaatcaaattaaattgatcaatt 9604352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 9603530 - 9603768
Alignment:
Q  12 atcatcaggtatataggtggtgctaaccttttcattctttacagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaa 111  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603530 atcatcaggtatataggtggtgctacccttttcgttctttacagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaa 9603629  T
Q  112 agtgattagtagaaaccctaaacaatttttgagcgagtttgtggatgaatggagaaaccctaacatcttttatatattgagaaaggggcccttcaaaccc 211  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603630 agtgattagtagaaaccctaaacaacttttgagcgagtttgtggatgaatggagaaaccctaacatcttttatatattgagaaaggggcccttcaaaccc 9603729  T
Q  212 ttctgttttccattttctttttgccacaaaagccctcca 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9603730 ttctgttttccattttctttttgccacaaaagccctcca 9603768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 569 - 672
Target Start/End: Complemental strand, 2491756 - 2491653
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    ||||||||||||||||||||||| ||||||||||  ||||||| | | || |||| |||||||||||||||||| |||| ||||||||||||| ||||||    
T  2491756 ttttgcaaaatgaccattatgcacataaaattaaggagatcattaattttaataaggacgattatgaaattttggtgtacttcgatttttatatattgtt 2491657  T
Q  669 agta 672  Q
    ||||    
T  2491656 agta 2491653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 569 - 675
Target Start/End: Original strand, 50908771 - 50908877
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    ||||||||||||||| ||||||| ||||||||||| ||||| ||||| || | || || |||||||||||||||||||| ||| | ||| ||| ||||||    
T  50908771 ttttgcaaaatgacctttatgcacataaaattaaagagatcgtgagttttaaaaaggatgattatgaaattttgttgtacttcaactttcatatattgtt 50908870  T
Q  669 agtagat 675  Q
    |||||||    
T  50908871 agtagat 50908877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 9582932 - 9583136
Alignment:
Q  13 tcatcaggtatataggtggtgctaaccttttcattcttta-cagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaa 111  Q
    ||||||||||||||||||||||| ||| |||| || |||| |||| || |||||||| |  |||||||||| |||||||| ||||||| ||||||| |||    
T  9582932 tcatcaggtatataggtggtgctcacc-tttctttttttagcagcgactgactccatcggcggttgcaaattggaatgcagtgagatcctgaaagcacaa 9583030  T
Q  112 agtgatt-------------agtagaaaccctaaacaatttttgagcgagtttgtggatgaatggagaaaccctaac-atcttttatatattgagaaagg 197  Q
    |||||||             || ||||||||||||||| ||| |||||||| |||||||||||  |||||||||| |  | |||||||||||||||||||    
T  9583031 agtgattgggattactagaaagcagaaaccctaaacaaatttggagcgagtctgtggatgaatatagaaaccctagcgcttttttatatattgagaaagg 9583130  T
Q  198 ggccct 203  Q
     |||||    
T  9583131 agccct 9583136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 9588627 - 9588831
Alignment:
Q  13 tcatcaggtatataggtggtgctaaccttttcattcttta-cagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaa 111  Q
    ||||||||||||||||||||||| ||| |||| || |||| |||| || |||||||| |  |||||||||| |||||||| ||||||| ||||||| |||    
T  9588627 tcatcaggtatataggtggtgctcacc-tttctttttttagcagcgactgactccatcggcggttgcaaattggaatgcagtgagatcctgaaagcacaa 9588725  T
Q  112 agtgatt-------------agtagaaaccctaaacaatttttgagcgagtttgtggatgaatggagaaaccctaac-atcttttatatattgagaaagg 197  Q
    |||||||             || ||||||||||||||| ||| |||||||| |||||||||||  |||||||||| |  | |||||||||||||||||||    
T  9588726 agtgattgggattactagaaagcagaaaccctaaacaaatttggagcgagtctgtggatgaatatagaaaccctagcgcttttttatatattgagaaagg 9588825  T
Q  198 ggccct 203  Q
     |||||    
T  9588826 agccct 9588831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 675
Target Start/End: Original strand, 50908584 - 50908690
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    ||||||||||||||||||||||| ||||||||||  ||||| ||||| || |  | ||||||||||||||||||||||| ||| | ||| ||| ||| ||    
T  50908584 ttttgcaaaatgaccattatgcacataaaattaaggagatcgtgagttttaaagaggacgattatgaaattttgttgtacttcaactttcatatattatt 50908683  T
Q  669 agtagat 675  Q
    |||||||    
T  50908684 agtagat 50908690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 569 - 657
Target Start/End: Complemental strand, 11984070 - 11983982
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttt 657  Q
    ||||||||||||||  ||||||| ||||||||||  |||  |||||| || | ||||||||||||||||||||||||||||||| ||||    
T  11984070 ttttgcaaaatgactgttatgcacataaaattaaggagactatgagttttaacaaagacgattatgaaattttgttgtatttcggtttt 11983982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 9594727 - 9594833
Alignment:
Q  12 atcatcaggtatataggtggtgctaaccttttcattctttacagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaa 111  Q
    |||||||| ||||||||||||||| ||||||   || ||| | ||||| ||||||||    ||||| |||| ||||||||||||||| ||||||||||||    
T  9594727 atcatcagctatataggtggtgctcacctttctcttttttgcggccactgactccatgagcggttgtaaattggaatgcaatgagatattgaaagcgcaa 9594826  T
Q  112 agtgatt 118  Q
    |||||||    
T  9594827 agtgatt 9594833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 569 - 675
Target Start/End: Original strand, 44468995 - 44469101
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    |||||||||||||| |||||||| ||||||||||   |||||||||| || |  | |||||||||||||||||| |||| ||| | ||| ||| ||||||    
T  44468995 ttttgcaaaatgacgattatgcacataaaattaaggtgatcatgagttttaaataggacgattatgaaattttgctgtacttcaactttcatatattgtt 44469094  T
Q  669 agtagat 675  Q
    |||||||    
T  44469095 agtagat 44469101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 569 - 641
Target Start/End: Complemental strand, 27530058 - 27529986
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaatttt 641  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||| || | || ||| |||||||||||||    
T  27530058 ttttgcgaaatgaccattatgcacataaaattaaagagatcatgagttttaagaaggacaattatgaaatttt 27529986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 365 - 441
Target Start/End: Complemental strand, 30441444 - 30441368
Alignment:
Q  365 caaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 441  Q
    ||||||||||||||||| || | ||||||||||||| ||||||  || ||||||| |||||||||||||||| ||||    
T  30441444 caaaaatacgttgaaatgtttcggattttagaatctaaatagggtgcacgagaagctcatagggtgggaaaagtaat 30441368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 342 - 405
Target Start/End: Original strand, 782390 - 782453
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaata 405  Q
    ||||||||||||||||||| ||||||||| | ||||||||||| | |||||||||||| |||||    
T  782390 gcataaaaacctcataaaatctccaaaaaaaagttgaaatatttcggattttagaatccgaata 782453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 569 - 676
Target Start/End: Complemental strand, 11130822 - 11130715
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    ||||||||| ||||||||||||| ||||||| ||  ||||||||||| || |  | |||||||||||||||||| |||| ||  | ||||||| | ||||    
T  11130822 ttttgcaaattgaccattatgcacataaaatcaaggagatcatgagttttaaagaggacgattatgaaattttgctgtacttaaacttttatatactgtt 11130723  T
Q  669 agtagatg 676  Q
    ||||||||    
T  11130722 agtagatg 11130715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 671
Target Start/End: Complemental strand, 11983941 - 11983840
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    |||||| |||||||  ||||||||||||||||||  |||  ||| || || || |||||||||||||| ||||| |||| ||||||||||||| ||||||    
T  11983941 ttttgcgaaatgactgttatgcatataaaattaaggagactatgcgtattaatgaagacgattatgaa-ttttgatgtacttcgatttttatatattgtt 11983843  T
Q  669 agt 671  Q
    |||    
T  11983842 agt 11983840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 442
Target Start/End: Original strand, 7257305 - 7257405
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 441  Q
    |||||||| |||||||||||||||||||| | ||||||||||    |||||||||||  ||||||| |  |||||||  ||||||||||| |||| ||||    
T  7257305 gcataaaatcctcataaaacctccaaaaacatgttgaaatatcttggattttagaatacgaatagggcatgcgagaacctcatagggtggaaaaagtaat 7257404  T
Q  442 g 442  Q
    |    
T  7257405 g 7257405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 388 - 443
Target Start/End: Complemental strand, 10156820 - 10156765
Alignment:
Q  388 gattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatgg 443  Q
    ||||||||||||||||||||  |||||||||| ||||||  |||||||||||||||    
T  10156820 gattttagaatctgaatagggtgcgcgagaagctcatagaatgggaaaaataatgg 10156765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 570 - 669
Target Start/End: Complemental strand, 14204028 - 14203929
Alignment:
Q  570 tttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtta 669  Q
    |||| |||||||| |||||||| || ||||||| ||||| |||||| || |||| ||  |||||||||||||| || | || |||||||||| |||||||    
T  14204028 tttgaaaaatgacaattatgcacatgaaattaagaagataatgagttttaataaggattattatgaaattttgatggactttgatttttatatattgtta 14203929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 620 - 675
Target Start/End: Original strand, 25447187 - 25447242
Alignment:
Q  620 ataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtagat 675  Q
    |||| ||||||||||||||||||||||  ||| ||||||||| |||||||||||||    
T  25447187 ataaggacgattatgaaattttgttgtgcttcaatttttatacattgttagtagat 25447242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 674
Target Start/End: Complemental strand, 14204632 - 14204555
Alignment:
Q  596 aaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtaga 674  Q
    ||||||| ||||| |||||| || ||||||||||||||||||||||| || | || |||||||||  ||||||||||||    
T  14204632 aaattaagaagataatgagttttaataaagacgattatgaaattttggtggactttgatttttat-tattgttagtaga 14204555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 478 - 537
Target Start/End: Complemental strand, 909107 - 909047
Alignment:
Q  478 aaaatcttatatcgacaatattattctagattcttcctaa-caactagtgagtcaccaatc 537  Q
    |||||||||||| ||||||||||||||||| ||||| |||  |||||| ||||||||||||    
T  909107 aaaatcttatatagacaatattattctagactcttcttaataaactagcgagtcaccaatc 909047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 342 - 398
Target Start/End: Complemental strand, 3664286 - 3664230
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaat 398  Q
    ||||||||| |||||||||||| |||||| ||||| ||||||| | |||||||||||    
T  3664286 gcataaaaatctcataaaacctacaaaaacacgttaaaatatttcggattttagaat 3664230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 569 - 645
Target Start/End: Complemental strand, 10819696 - 10819621
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttg 645  Q
    ||||| |||||||| ||| |||| | |||||||| |||||||||||| || |||  |||||||||||||||||||||    
T  10819696 ttttggaaaatgac-attgtgcaaaaaaaattaagaagatcatgagttttaatagggacgattatgaaattttgttg 10819621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 675
Target Start/End: Complemental strand, 11983787 - 11983688
Alignment:
Q  576 aaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtagat 675  Q
    |||||||  ||||||| ||||||||||  |||  |||||| || ||||  ||||||||||| ||||| ||||  ||| |||||||| |||||||||||||    
T  11983787 aaatgactgttatgcacataaaattaaggagactatgagttttaataagaacgattatgaagttttgctgtacctcggtttttatatattgttagtagat 11983688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 342 - 404
Target Start/End: Original strand, 55301174 - 55301235
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaat 404  Q
    ||||||||| ||||||||| ||| ||||| |||||||||||||   |||||||||||||||||    
T  55301174 gcataaaaatctcataaaatctctaaaaacacgttgaaatatt-tggattttagaatctgaat 55301235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 669
Target Start/End: Complemental strand, 37082518 - 37082433
Alignment:
Q  584 attatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtta 669  Q
    |||||||| || ||||||| ||||| |||||| || |||| ||  |||||||||||||| || | || |||||||||| |||||||    
T  37082518 attatgcacattaaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 37082433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 6e-27; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 569 - 675
Target Start/End: Complemental strand, 32095095 - 32094989
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||| || |||||||| |||||||||||||| || | || |||||||||| ||||||    
T  32095095 ttttgcaaaatgaccattatgcacataaaattaaggagatcatgagttttaataaagactattatgaaattttgctggactttgatttttatatattgtt 32094996  T
Q  669 agtagat 675  Q
    |||||||    
T  32094995 agtagat 32094989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 346 - 418
Target Start/End: Complemental strand, 44173239 - 44173167
Alignment:
Q  346 aaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaa 418  Q
    |||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  44173239 aaaaacttcataaaatctccaaaaatacgttgaaatatttctgattttagaatctgaatagggcgcgcgagaa 44173167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 342 - 419
Target Start/End: Original strand, 9045697 - 9045774
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaag 419  Q
    ||||||||||  ||||||||||||||||| ||||||||||||| ||||||||  ||||||||||||||| || |||||    
T  9045697 gcataaaaactccataaaacctccaaaaacacgttgaaatatttcagatttttaaatctgaataggacgtgcaagaag 9045774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 342 - 444
Target Start/End: Original strand, 27157688 - 27157790
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 441  Q
    ||||||| ||| ||||||| ||||||||  ||||||||||| | | |||||||||||| |||||| |||| ||||||  ||||||||||| |||| ||||    
T  27157688 gcataaataccccataaaatctccaaaaccacgttgaaataattcggattttagaatccgaatagcacgcacgagaaactcatagggtggaaaaagtaat 27157787  T
Q  442 ggc 444  Q
    |||    
T  27157788 ggc 27157790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 569 - 676
Target Start/End: Complemental strand, 32094891 - 32094784
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    ||||||||||||||||||||  | | ||||||||  |||||| |||| || |||| ||||||| |||||||||| |  ||||||||||||| | ||||||    
T  32094891 ttttgcaaaatgaccattatatacaaaaaattaaggagatcaagagttttaataatgacgattttgaaattttgctagatttcgatttttacatattgtt 32094792  T
Q  669 agtagatg 676  Q
     |||||||    
T  32094791 tgtagatg 32094784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 647
Target Start/End: Complemental strand, 21598785 - 21598707
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgta 647  Q
    |||| ||||||||| |||||||| ||||||||||| |||| |||||| || |  | |||||||||||||||||||||||    
T  21598785 ttttacaaaatgactattatgcaaataaaattaaagagattatgagttttaaagaggacgattatgaaattttgttgta 21598707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 354 - 444
Target Start/End: Complemental strand, 39039788 - 39039698
Alignment:
Q  354 cataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatggc 444  Q
    |||||||| || ||||| |||||||||| || | ||||||||||||| |||||||||||| ||||| | ||||| ||  ||||||||||||    
T  39039788 cataaaacttctaaaaacacgttgaaatgtttcggattttagaatctaaataggacgcgcaagaagcttataggatgaaaaaaataatggc 39039698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 674
Target Start/End: Complemental strand, 37745220 - 37745142
Alignment:
Q  596 aaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtaga 674  Q
    ||||||| ||||| |||||| || |||| ||||| |||||||||||| || | || |||||||||| ||||||||||||    
T  37745220 aaattaagaagataatgagttttaataaggacgactatgaaattttggtggactttgatttttatatattgttagtaga 37745142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 39555931 - 39555878
Alignment:
Q  365 caaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaa 418  Q
    |||||| ||||||||| ||| ||||||||| |||||||| ||||||||||||||    
T  39555931 caaaaacacgttgaaacatttcagattttaaaatctgaacaggacgcgcgagaa 39555878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 436
Target Start/End: Complemental strand, 37507617 - 37507539
Alignment:
Q  357 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaa 436  Q
    |||||||||||||  ||||||||| ||| | |||||||||||  ||||||| ||||| ||||  ||||||||||||||||    
T  37507617 aaaacctccaaaac-acgttgaaacatttcggattttagaattcgaatagggcgcgcaagaaactcatagggtgggaaaa 37507539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 412
Target Start/End: Complemental strand, 40899706 - 40899651
Alignment:
Q  357 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcg 412  Q
    ||||||| |||||| ||||| ||||||| ||||||||| |||||||||||| ||||    
T  40899706 aaaaccttcaaaaacacgttaaaatatttcagattttaaaatctgaatagggcgcg 40899651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 569 - 671
Target Start/End: Original strand, 22497242 - 22497344
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||||||| || |||| ||| ||||| ||||||||||||| ||| ||||||||| ||||||    
T  22497242 ttttgcaaattgaccattatgcacataaaattaaagagatcatgagttttaataaggacaattataaaattttgttgtacttcaatttttatatattgtt 22497341  T
Q  669 agt 671  Q
    |||    
T  22497342 agt 22497344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 342 - 444
Target Start/End: Complemental strand, 35323699 - 35323597
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 441  Q
    |||||||||||   |||||||| |||||||||||||||||||| | |||||||||||||||||||||||| ||||||  ||||| |||||||||| ||||    
T  35323699 gcataaaaaccctgtaaaaccttcaaaaatacgttgaaatatttcggattttagaatctgaataggacgcacgagaatctcataaggtgggaaaagtaat 35323600  T
Q  442 ggc 444  Q
    |||    
T  35323599 ggc 35323597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 578 - 675
Target Start/End: Original strand, 13861234 - 13861331
Alignment:
Q  578 atgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtagat 675  Q
    |||||||||||||| ||||||||||  ||||||||| | ||  ||||||| |||||||||||||| || | ||||||||||||| |||||||||||||    
T  13861234 atgaccattatgcacataaaattaaggagatcatgaattttattaaagacaattatgaaattttgctgaacttcgatttttatatattgttagtagat 13861331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 675
Target Start/End: Complemental strand, 31289873 - 31289767
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    ||||||||||||||||||||||| ||||||||||  ||||| ||||| || |||| ||||||||| ||||||   || | ||| ||||||||| ||||||    
T  31289873 ttttgcaaaatgaccattatgcacataaaattaaggagatcttgagttttaataaggacgattataaaatttcactggacttcaatttttataaattgtt 31289774  T
Q  669 agtagat 675  Q
    |||||||    
T  31289773 agtagat 31289767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 342 - 441
Target Start/End: Complemental strand, 21039335 - 21039236
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 441  Q
    |||||||||||||| |||||||||||| | ||   |||||||| | ||||||| |||||||||||||||| ||||||  |  ||||||||||||||||||    
T  21039335 gcataaaaacctcaaaaaacctccaaacacacaaagaaatatttcggattttaaaatctgaataggacgcacgagaaacttgtagggtgggaaaaataat 21039236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 569 - 647
Target Start/End: Original strand, 36914071 - 36914149
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgta 647  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||| || |  ||||| |||||||| ||||||||||    
T  36914071 ttttgcaaaatgaccattatgcacataaaattaaggagatcatgagttttaaagaagacaattatgaacttttgttgta 36914149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 570 - 675
Target Start/End: Complemental strand, 40744623 - 40744518
Alignment:
Q  570 tttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtta 669  Q
    |||| |||||||| |||||| | ||||||||||  ||||||| ||| |  ||||  | ||||||||||||||| |||||||||||||||||| |||||||    
T  40744623 tttgtaaaatgactattatgaacataaaattaaggagatcataagtttaaataagaaagattatgaaattttggtgtatttcgatttttatatattgtta 40744524  T
Q  670 gtagat 675  Q
     |||||    
T  40744523 ctagat 40744518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 471 - 534
Target Start/End: Complemental strand, 22431323 - 22431260
Alignment:
Q  471 agagtacaaaatcttatatcgacaatattattctagattcttcctaacaactagtgagtcacca 534  Q
    ||||||||| ||||||||| ||||||||||||||||||  ||||||| |||| |||||||||||    
T  22431323 agagtacaagatcttatatagacaatattattctagatctttcctaataacttgtgagtcacca 22431260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 346 - 445
Target Start/End: Complemental strand, 31859811 - 31859712
Alignment:
Q  346 aaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatggct 445  Q
    ||||||| ||||||| ||||||||||| |||| |||||| | ||||||||| || ||||||| ||| ||||||| ||||| | ||| |||| ||||||||    
T  31859811 aaaaaccccataaaatctccaaaaataagttggaatatttcggattttagagtccgaatagggcgcacgagaagctcataagatggcaaaagtaatggct 31859712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 357 - 443
Target Start/End: Complemental strand, 17223148 - 17223062
Alignment:
Q  357 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatgg 443  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||| |||| | |||| |||||  ||||  |||||||||| ||||||    
T  17223148 aaaacctgcaaaaacacgttgaaatatttcagattttagaatctaaataaggcgcgtgagaaactcatcaggtgggaaaagtaatgg 17223062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 585 - 674
Target Start/End: Original strand, 22499274 - 22499363
Alignment:
Q  585 ttatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtaga 674  Q
    ||||||| ||||||||||   | |||| ||| || |||| || |||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  22499274 ttatgcacataaaattaaggcggtcataagttttaataaggatgattatgaaattttgttgtagttcaatttttatatattgttagtaga 22499363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 365 - 444
Target Start/End: Original strand, 13271486 - 13271565
Alignment:
Q  365 caaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatggc 444  Q
    |||||| ||||||||||||| |||||||||||||   |||||||||||||||||  | ||| ||||| |||| |||||||    
T  13271486 caaaaacacgttgaaatatttcagattttagaattcaaataggacgcgcgagaaactaatatggtggaaaaagtaatggc 13271565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 620 - 675
Target Start/End: Original strand, 22497359 - 22497414
Alignment:
Q  620 ataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtagat 675  Q
    |||| ||||||| ||||||||||||||| || |||||||||| |||||||||||||    
T  22497359 ataaggacgattgtgaaattttgttgtactttgatttttatatattgttagtagat 22497414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 628 - 675
Target Start/End: Original strand, 22498634 - 22498681
Alignment:
Q  628 gattatgaaattttgttgtatttcgatttttatagattgttagtagat 675  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  22498634 gattatgaaatttggttgtacatcgatttttatagattgttagtagat 22498681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 675
Target Start/End: Complemental strand, 17761823 - 17761778
Alignment:
Q  630 ttatgaaattttgttgtatttcgatttttatagattgttagtagat 675  Q
    |||||||||||||||||| ||||||||||||| ||||||| |||||    
T  17761823 ttatgaaattttgttgtacttcgatttttatatattgttactagat 17761778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 18401310 - 18401235
Alignment:
Q  341 agcataaaaacctcataaa-acctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcga 415  Q
    |||||||| |||||||| | ||||||||||| ||||||||| ||| |||||| || ||||||||||| || |||||    
T  18401310 agcataaacacctcatacagacctccaaaaacacgttgaaacatttcagattctataatctgaatagaacacgcga 18401235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 675
Target Start/End: Original strand, 22498877 - 22498920
Alignment:
Q  632 atgaaattttgttgtatttcgatttttatagattgttagtagat 675  Q
    |||||||||||||||| ||||||||||||  |||||||||||||    
T  22498877 atgaaattttgttgtacttcgatttttatttattgttagtagat 22498920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 615
Target Start/End: Original strand, 11562977 - 11563023
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagt 615  Q
    |||||||||||||| |||||||| |||||||||| ||||| ||||||    
T  11562977 ttttgcaaaatgactattatgcacataaaattaagaagattatgagt 11563023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 344 - 442
Target Start/End: Complemental strand, 14872686 - 14872588
Alignment:
Q  344 ataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatg 442  Q
    |||||||||  |||||||||| ||||| |||||||||||||   ||||||||||| | || ||  ||| ||||||  | |||||||||||||| |||||    
T  14872686 ataaaaaccctataaaacctctaaaaacacgttgaaatattttggattttagaatttaaacagagcgcacgagaacctaatagggtgggaaaagtaatg 14872588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 675
Target Start/End: Original strand, 42859090 - 42859196
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    |||||||||||||| |||||||  || |||||||  |||| |||||| || | || || |||| | |||||||| |  | ||||||||||||| ||||||    
T  42859090 ttttgcaaaatgacgattatgcgcatgaaattaaggagataatgagttttaaaaaggaggattgtaaaattttgctagacttcgatttttatatattgtt 42859189  T
Q  669 agtagat 675  Q
    |||||||    
T  42859190 agtagat 42859196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 8217178 - 8217125
Alignment:
Q  365 caaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaa 418  Q
    |||||| ||||| ||| ||| ||||||||||||| |||||||| ||||||||||    
T  8217178 caaaaacacgttaaaacatttcagattttagaatttgaatagggcgcgcgagaa 8217125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 615
Target Start/End: Original strand, 22497542 - 22497587
Alignment:
Q  570 tttgcaaaatgaccattatgcatataaaattaaaaagatcatgagt 615  Q
    |||||||||| ||||||||||| ||||||||||  |||||||||||    
T  22497542 tttgcaaaataaccattatgcacataaaattaaggagatcatgagt 22497587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 28503275 - 28503315
Alignment:
Q  357 aaaacctccaaaaatacgttgaaatattccagattttagaat 398  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  28503275 aaaacctccaaaa-tacgttgaaatatttcagattttagaat 28503315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 669
Target Start/End: Complemental strand, 34992178 - 34992093
Alignment:
Q  584 attatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtta 669  Q
    |||||||| || ||||||| ||||| |||||| || |||| ||  |||||||||||||| || | || |||||||||| |||||||    
T  34992178 attatgcacattaaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 34992093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 4e-22; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 569 - 675
Target Start/End: Original strand, 32981548 - 32981654
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    |||||||||| |||||||||||| ||||||||||  || || ||||| || ||||||||||||||||||||||| || ||| | ||||||||| ||||||    
T  32981548 ttttgcaaaacgaccattatgcacataaaattaaggagctcttgagttttaataaagacgattatgaaattttgatggattgcaatttttatatattgtt 32981647  T
Q  669 agtagat 675  Q
    |||||||    
T  32981648 agtagat 32981654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 355 - 444
Target Start/End: Complemental strand, 7925426 - 7925337
Alignment:
Q  355 ataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatggc 444  Q
    |||||||||  ||||||||||||||||||| ||||||||||||||| |||||||| || |||||  ||||||||||| |||| |||||||    
T  7925426 ataaaaccttaaaaaatacgttgaaatatttcagattttagaatctaaataggacacgtgagaaattcatagggtggaaaaagtaatggc 7925337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 675
Target Start/End: Original strand, 496000 - 496106
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    ||||||||||||||||||||||| ||||| ||||  ||||||||||| || |  | ||||||||||||||||||||||| ||| | ||| | | ||||||    
T  496000 ttttgcaaaatgaccattatgcacataaagttaaggagatcatgagttttgaagaggacgattatgaaattttgttgtacttcaactttcagatattgtt 496099  T
Q  669 agtagat 675  Q
    |||||||    
T  496100 agtagat 496106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 587 - 675
Target Start/End: Complemental strand, 13661706 - 13661618
Alignment:
Q  587 atgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtagat 675  Q
    ||||| ||||||||||| ||||||||||| || ||||  |||| |||||||||||| || | ||||||||||||| |||||||||||||    
T  13661706 atgcacataaaattaaagagatcatgagttttaataagaacgaatatgaaattttgctggacttcgatttttatacattgttagtagat 13661618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 575 - 674
Target Start/End: Complemental strand, 13662165 - 13662066
Alignment:
Q  575 aaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtaga 674  Q
    |||||||| |||||||| ||||||||||  ||||||||||| || |||| || ||||||||| |||||||| | ||| ||||||||| ||| ||||||||    
T  13662165 aaaatgacaattatgcacataaaattaaggagatcatgagttttaataaggaagattatgaatttttgttggacttcaatttttatatatttttagtaga 13662066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 569 - 674
Target Start/End: Complemental strand, 12012354 - 12012249
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    ||||||||||||||||||||||| || |||||||  |||| |||||| || || | || ||||||||||||||| |  | ||| ||||||||| ||||||    
T  12012354 ttttgcaaaatgaccattatgcacatgaaattaaggagataatgagttttaattaggaggattatgaaattttgctagacttcaatttttatatattgtt 12012255  T
Q  669 agtaga 674  Q
    ||||||    
T  12012254 agtaga 12012249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 575 - 675
Target Start/End: Complemental strand, 13662477 - 13662377
Alignment:
Q  575 aaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtaga 674  Q
    |||||||| |||||||| ||||||||||  ||||||||||| || |||| |||||||||||| ||||  || | ||| ||||||||  ||||||||||||    
T  13662477 aaaatgacaattatgcacataaaattaaggagatcatgagttttaataaggacgattatgaatttttactggacttcaatttttatgcattgttagtaga 13662378  T
Q  675 t 675  Q
    |    
T  13662377 t 13662377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 569 - 676
Target Start/End: Complemental strand, 13661811 - 13661704
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    ||||| |||||||||||||||||  |||||||||  | ||||||||| || |||| ||||||||||||||||||  | | ||  |||||||||  |||||    
T  13661811 ttttgtaaaatgaccattatgcacgtaaaattaaggaaatcatgagttttaataaggacgattatgaaattttgccggactttaatttttatactttgtt 13661712  T
Q  669 agtagatg 676  Q
    ||||||||    
T  13661711 agtagatg 13661704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 342 - 436
Target Start/End: Complemental strand, 25123318 - 25123224
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaa 436  Q
    |||||||||||  ||||||||||||||||  |||| |||||||   |||||||||||||||||||| ||||||| ||  ||||| ||||| ||||    
T  25123318 gcataaaaaccctataaaacctccaaaaacgcgttaaaatattttggattttagaatctgaatagggcgcgcgaaaaactcatatggtggaaaaa 25123224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 675
Target Start/End: Original strand, 31721465 - 31721571
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    |||| ||||||||  ||||||||  ||||| |||  ||||||| ||| || || |  |||||||| ||||||||||||||||| ||||||||| ||||||    
T  31721465 tttttcaaaatgataattatgcacgtaaaagtaaggagatcattagttttaatcagcacgattataaaattttgttgtatttcaatttttatatattgtt 31721564  T
Q  669 agtagat 675  Q
    |||||||    
T  31721565 agtagat 31721571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 345 - 442
Target Start/End: Original strand, 33513396 - 33513492
Alignment:
Q  345 taaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatg 442  Q
    |||||||| |||||||||||| |||| |||||||||||||   |||||||||||| |||||||  || | ||||  ||||||||||| ||||||||||    
T  33513396 taaaaacc-cataaaacctccgaaaacacgttgaaatatttaggattttagaatccgaatagggtgcacaagaaactcatagggtggaaaaaataatg 33513492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 442
Target Start/End: Original strand, 36692887 - 36692987
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 441  Q
    ||||||||||||| ||||| || ||||||||| |||||||||| ||||||||||||    |||||  ||||||||||| ||||| | || ||||| ||||    
T  36692887 gcataaaaacctcgtaaaaacttcaaaaatacattgaaatatttcagattttagaactcaaatagagcgcgcgagaagctcatatgatgagaaaagtaat 36692986  T
Q  442 g 442  Q
    |    
T  36692987 g 36692987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 354 - 442
Target Start/End: Complemental strand, 23771764 - 23771674
Alignment:
Q  354 cataaaacctccaaaaatac--gttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatg 442  Q
    ||||||||||||||||| ||  |||||||||||  |||||||||||||  |||||  ||||||| ||| |||||||||| ||||| |||||    
T  23771764 cataaaacctccaaaaaaacatgttgaaatatttaagattttagaatccaaatagagcgcgcgataagctcatagggtgcgaaaagtaatg 23771674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 26665523 - 26665589
Alignment:
Q  374 gttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataa 440  Q
    ||||||||||| | ||||||| ||||  |||||||||||||||||  ||||||| ||||||||||||    
T  26665523 gttgaaatatttcggattttaaaatccaaataggacgcgcgagaaactcataggatgggaaaaataa 26665589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 569 - 641
Target Start/End: Original strand, 496128 - 496200
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaatttt 641  Q
    ||||||||||||||||||||||| ||||||||||  |||| |||||| || |  | || ||||||||||||||    
T  496128 ttttgcaaaatgaccattatgcacataaaattaaggagataatgagttttaaagaggatgattatgaaatttt 496200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 571 - 639
Target Start/End: Original strand, 12012651 - 12012719
Alignment:
Q  571 ttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaatt 639  Q
    ||||||||||||||||||||| |  |||| ||  ||||||||||| || |||||||||||||| |||||    
T  12012651 ttgcaaaatgaccattatgcacaagaaatcaaggagatcatgagttttaataaagacgattataaaatt 12012719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 397
Target Start/End: Original strand, 36679272 - 36679327
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaa 397  Q
    ||||||||||||| ||||| || |||||| || |||||||||| ||||||||||||    
T  36679272 gcataaaaacctcgtaaaaacttcaaaaaaacattgaaatatttcagattttagaa 36679327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 32808638 - 32808564
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgag 416  Q
    ||||||||| |||||||||||||||||||||  || ||| |||   ||||||| |||| |||||| |||||||||    
T  32808638 gcataaaaatctcataaaacctccaaaaataaattaaaaaattttggattttaaaatccgaatagaacgcgcgag 32808564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 577 - 675
Target Start/End: Original strand, 32981239 - 32981336
Alignment:
Q  577 aatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtagat 675  Q
    ||||||||||||||| |||||||| |  | ||||||||| || |||| ||| || ||||||||||   | | ||||||||||||| |||||||||||||    
T  32981239 aatgaccattatgcacataaaatttaggatatcatgagt-ttaataaggacaatcatgaaattttaaaggacttcgatttttatatattgttagtagat 32981336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 666
Target Start/End: Original strand, 4148022 - 4148063
Alignment:
Q  625 gacgattatgaaattttgttgtatttcgatttttatagattg 666  Q
    ||||||||||||||||||||| |||| |||||||||| ||||    
T  4148022 gacgattatgaaattttgttggatttagatttttatatattg 4148063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 666
Target Start/End: Original strand, 4148858 - 4148899
Alignment:
Q  625 gacgattatgaaattttgttgtatttcgatttttatagattg 666  Q
    ||||||||||||||||||||| |||| |||||||||| ||||    
T  4148858 gacgattatgaaattttgttggatttagatttttatatattg 4148899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 666
Target Start/End: Original strand, 4164627 - 4164668
Alignment:
Q  625 gacgattatgaaattttgttgtatttcgatttttatagattg 666  Q
    ||||||||||||||||||||| |||| |||||||||| ||||    
T  4164627 gacgattatgaaattttgttgaatttagatttttatatattg 4164668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 669
Target Start/End: Complemental strand, 4333999 - 4333914
Alignment:
Q  584 attatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtta 669  Q
    |||||||| || ||||||| ||||| |||||| || |||| ||  |||||||||||||| || | || |||||||||| |||||||    
T  4333999 attatgcacattaaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 4333914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 14338994 - 14338928
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacg 410  Q
    ||||||| |||| ||||||||||  |||| |||||||||||||   ||||| |||||||||||||||||    
T  14338994 gcataaataccttataaaacctc--aaaacacgttgaaatattttggatttaagaatctgaataggacg 14338928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 669
Target Start/End: Complemental strand, 21631248 - 21631163
Alignment:
Q  584 attatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtta 669  Q
    |||||||| || ||||||| ||||| |||||| || |||| ||  |||||||||||||| || | || |||||||||| |||||||    
T  21631248 attatgcacattaaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 21631163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 658
Target Start/End: Original strand, 32981679 - 32981767
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgattttt 658  Q
    |||| |||||| || |||||||| |||||||||| || ||||||||| || |||| | || |||||||||||| ||| ||||| ||||||    
T  32981679 ttttacaaaataacaattatgcacataaaattaagaa-atcatgagttttaataaggtcgtttatgaaattttattggatttcaattttt 32981767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 569 - 674
Target Start/End: Original strand, 29530584 - 29530689
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    ||||||||||||||||||| |||  |||||||||  ||||||||||| || |||| |||||||||||||||||| | || || |||||||||| ||||||    
T  29530584 ttttgcaaaatgaccattacgcacgtaaaattaaggagatcatgagttttaataaggacgattatgaaattttgctttactttgatttttatatattgtt 29530683  T
Q  669 agtaga 674  Q
    ||||||    
T  29530684 agtaga 29530689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 344 - 442
Target Start/End: Complemental strand, 40256902 - 40256804
Alignment:
Q  344 ataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatg 442  Q
    ||||||||| ||||||||||||||||| |||||| |||||| ||||||||| |||| ||||| | ||||||| ||  |||||||||| |||||||||||    
T  40256902 ataaaaaccacataaaacctccaaaaacacgttgcaatatttcagattttaaaatccgaataaggcgcgcgaaaaactcatagggtgagaaaaataatg 40256804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 569 - 675
Target Start/End: Complemental strand, 29237417 - 29237313
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    |||| |||||||||||||||||| ||||||||||  ||||||||||| || |  | |||||||||||||||||| |||  |||||  |||||| ||||||    
T  29237417 ttttacaaaatgaccattatgcacataaaattaaggagatcatgagttttaaagaggacgattatgaaattttggtgtgcttcga--tttatatattgtt 29237320  T
Q  669 agtagat 675  Q
    |||||||    
T  29237319 agtagat 29237313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 569 - 672
Target Start/End: Complemental strand, 44602746 - 44602643
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    ||||||||||||||||||||||| ||||| ||||  ||||||||||| || || | |||||| ||||||||||  |||| ||||| ||||||| ||| ||    
T  44602746 ttttgcaaaatgaccattatgcacataaagttaaggagatcatgagttttaatgaggacgatcatgaaatttttatgtacttcgaattttataaattttt 44602647  T
Q  669 agta 672  Q
    ||||    
T  44602646 agta 44602643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 569 - 634
Target Start/End: Complemental strand, 12308081 - 12308016
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatg 634  Q
    ||||||||||||  ||||||||||||||||||||  ||||||||||| || |||| ||||||||||    
T  12308081 ttttgcaaaatgctcattatgcatataaaattaaggagatcatgagttttaataaggacgattatg 12308016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 570 - 669
Target Start/End: Original strand, 7668111 - 7668210
Alignment:
Q  570 tttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtta 669  Q
    |||| |||||||| |||||||| || ||||||| ||||| |||||| || |||| ||  |||||||||||||| || | ||  |||||||||||||||||    
T  7668111 tttgaaaaatgacaattatgcacatgaaattaagaagataatgagttttaataaggattattatgaaattttggtggactttaatttttatagattgtta 7668210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 592 - 675
Target Start/End: Original strand, 29530454 - 29530537
Alignment:
Q  592 tataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtagat 675  Q
    |||||||||||| |||||||| || || |||| ||| ||||||||||||| ||| | || ||||||| || |||||||||||||    
T  29530454 tataaaattaaagagatcatgggttttaataatgacaattatgaaatttttttggacttagatttttgtatattgttagtagat 29530537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 596 - 669
Target Start/End: Complemental strand, 19628954 - 19628881
Alignment:
Q  596 aaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtta 669  Q
    ||||||| ||||| |||||| || |||| |||||||||||||||||| || | || |||||||||| |||||||    
T  19628954 aaattaagaagataatgagttttaataaggacgattatgaaattttggtggactttgatttttatatattgtta 19628881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 443
Target Start/End: Complemental strand, 44453682 - 44453593
Alignment:
Q  354 cataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatgg 443  Q
    |||||||| |||||||| ||||||||||||| |  ||||||||||| ||||||||||  ||||||  | ||||||||  |||| ||||||    
T  44453682 cataaaacttccaaaaacacgttgaaatatttcgaattttagaatccgaataggacgtacgagaaacttatagggtgaaaaaagtaatgg 44453593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 596 - 669
Target Start/End: Original strand, 46735898 - 46735971
Alignment:
Q  596 aaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtta 669  Q
    ||||||| ||||| |||||| || |||| |||||||||||||||||| || | || |||||||||| |||||||    
T  46735898 aaattaagaagataatgagttttaataaggacgattatgaaattttggtggactttgatttttatatattgtta 46735971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 569 - 640
Target Start/End: Complemental strand, 44602958 - 44602886
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgag-tcttcataaagacgattatgaaattt 640  Q
    ||||||||||||||||||||||| ||||| ||||  |||||||||| | || |||| ||| ||||||||||||    
T  44602958 ttttgcaaaatgaccattatgcacataaagttaaggagatcatgagtttttaataaggacaattatgaaattt 44602886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 342 - 444
Target Start/End: Complemental strand, 2391680 - 2391578
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 441  Q
    ||||||||||| || || ||||  ||||||| ||||||||||| | ||||||||||||  |||||  ||||||||||  ||||||| ||  |||| ||||    
T  2391680 gcataaaaaccccacaagaccttaaaaaatatgttgaaatatttcggattttagaatccaaatagtgcgcgcgagaaactcataggatgaaaaaagtaat 2391581  T
Q  442 ggc 444  Q
    |||    
T  2391580 ggc 2391578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 357 - 443
Target Start/End: Original strand, 22713451 - 22713536
Alignment:
Q  357 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatgg 443  Q
    |||||||||||||| ||||||||||||| ||||||||| |||   |||||| ||| ||||||  ||||| ||||| |||| ||||||    
T  22713451 aaaacctccaaaaacacgttgaaatatttcagattttaaaattcaaatagg-cgcacgagaaactcataaggtggaaaaagtaatgg 22713536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 365 - 431
Target Start/End: Complemental strand, 31459480 - 31459414
Alignment:
Q  365 caaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgg 431  Q
    |||||||||||||||||||| | ||||||| ||| |||||||||| | ||||||  | |||||||||    
T  31459480 caaaaatacgttgaaatatttcggattttaaaatttgaataggacacacgagaaacttatagggtgg 31459414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 3255158 - 3255219
Alignment:
Q  357 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaa 418  Q
    ||||||| ||||||||  ||||||||||  ||||||||||||| ||||||  ||||||||||    
T  3255158 aaaaccttcaaaaatatattgaaatattttagattttagaatccgaatagagcgcgcgagaa 3255219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 669
Target Start/End: Original strand, 46369842 - 46369927
Alignment:
Q  584 attatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtta 669  Q
    |||||||| || ||||||| ||||| |||||| || |||| ||  |||||||||||||| || | || |||||||||| |||||||    
T  46369842 attatgcacattaaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 46369927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 300 - 442
Target Start/End: Complemental strand, 7591196 - 7591053
Alignment:
Q  300 catcctattagtttctcaagcgtc-tatgtagttcagattttagcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaat 398  Q
    |||||||| || |||||||||||| |||| ||||  |||||||| ||   |||  ||||||||||| ||||| ||||||||||||| | |||||||||||    
T  7591196 catcctatgagcttctcaagcgtcctatgcagtttggattttagaatccgaactgcataaaacctcaaaaaacacgttgaaatatttcggattttagaat 7591097  T
Q  399 ctgaataggacgcgcgagaaggtcatagggtgggaaaaataatg 442  Q
    || ||||||||||||| |||  ||||||| |||||||| |||||    
T  7591096 cttaataggacgcgcgggaaattcataggatgggaaaagtaatg 7591053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 342 - 424
Target Start/End: Complemental strand, 989583 - 989501
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcat 424  Q
    |||||||| || ||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||| || |||||||| ||||    
T  989583 gcataaaacccccataaaatctccaaaaacacgttgaaatatttcagattttagattctgaatagggcgtgcgagaagctcat 989501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 342 - 441
Target Start/End: Original strand, 6978498 - 6978598
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaat-acgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataa 440  Q
    ||||||||||  |||||||||||||||||| |||||||||||||  |||||||||||||  |||||||||| ||||||  ||||||| ||| |||| |||    
T  6978498 gcataaaaactccataaaacctccaaaaattacgttgaaatattttagattttagaatccaaataggacgcacgagaaactcataggatggaaaaagtaa 6978597  T
Q  441 t 441  Q
    |    
T  6978598 t 6978598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 343 - 427
Target Start/End: Complemental strand, 33450900 - 33450815
Alignment:
Q  343 cataaaaacctcataaaa-cctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagg 427  Q
    |||||| ||||| ||||| |||||||||| ||||||||||||| |  ||||||||||| ||||||||||||| ||||| |||||||    
T  33450900 cataaacacctcctaaaagcctccaaaaacacgttgaaatatttcgaattttagaatccgaataggacgcgcaagaagctcatagg 33450815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 438
Target Start/End: Original strand, 20207190 - 20207273
Alignment:
Q  355 ataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaat 438  Q
    |||||| || |||||| ||||||||||||| ||||||||||||||||||||||||  ||||||   |||||| ||| |||||||    
T  20207190 ataaaaacttcaaaaacacgttgaaatatttcagattttagaatctgaataggacatgcgagatattcatagagtgagaaaaat 20207273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 438
Target Start/End: Original strand, 22101213 - 22101296
Alignment:
Q  355 ataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaat 438  Q
    |||||| || |||||| ||||||||||||| ||||||||||||||||||||||||  ||||||   |||||| ||| |||||||    
T  22101213 ataaaaacttcaaaaacacgttgaaatatttcagattttagaatctgaataggacatgcgagatattcatagagtgagaaaaat 22101296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 342 - 444
Target Start/End: Original strand, 30522093 - 30522195
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 441  Q
    ||||||||||||||||||||||||||||| ||||  ||| ||| | |||||| ||||| ||||||| | | | ||||  ||||| |||||||||| ||||    
T  30522093 gcataaaaacctcataaaacctccaaaaacacgtaaaaacatttcggattttggaatccgaatagggcacacaagaacctcataaggtgggaaaagtaat 30522192  T
Q  442 ggc 444  Q
    |||    
T  30522193 ggc 30522195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 13214195 - 13214252
Alignment:
Q  358 aaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcga 415  Q
    ||||||| ||||| ||||||||||||| | ||||||| ||||||||||||| ||||||    
T  13214195 aaacctctaaaaacacgttgaaatatttcggattttaaaatctgaataggatgcgcga 13214252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 668
Target Start/End: Original strand, 12275074 - 12275158
Alignment:
Q  584 attatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    |||||||| ||||||||||  ||||||||||| || |||| || |||||||||||||| | | | |||| |||||||| ||||||    
T  12275074 attatgcacataaaattaaggagatcatgagttttaataacgatgattatgaaattttatcgaacttcggtttttatatattgtt 12275158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 675
Target Start/End: Original strand, 14911391 - 14911500
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcata---aagacgattatgaaattttgttgtatttcgatttttatagatt 665  Q
    |||||||||||| |||| ||||| |||| |||||  ||||||||| | || |||   | ||| ||||| |||||||| || | ||||||||||||| |||    
T  14911391 ttttgcaaaatgtccatcatgcacataatattaaggagatcatgaattttaataaggaggacaattataaaattttgctggacttcgatttttatatatt 14911490  T
Q  666 gttagtagat 675  Q
    ||||||||||    
T  14911491 gttagtagat 14911500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 444
Target Start/End: Original strand, 29389192 - 29389278
Alignment:
Q  357 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatggc 444  Q
    ||||||| |||||| ||||||||| ||| | ||||||| |||||||||||| || |||||||  | ||||||||| |||| |||||||    
T  29389192 aaaaccttcaaaaacacgttgaaacatttcggattttaaaatctgaatagggcgtgcgagaa-attatagggtggaaaaagtaatggc 29389278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 445
Target Start/End: Original strand, 32826710 - 32826801
Alignment:
Q  354 cataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatggct 445  Q
    |||||||||||||||||  ||||||||||||  | ||||||||||   ||||| |||||||||||  ||||||  ||| |||| ||||||||    
T  32826710 cataaaacctccaaaaactcgttgaaatatttaaaattttagaattcaaatagaacgcgcgagaaactcatagaatggaaaaagtaatggct 32826801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 445 - 538
Target Start/End: Original strand, 33623937 - 33624031
Alignment:
Q  445 taatttcatggatgactatcaatgaaagagtacaaaatcttatatcgacaatattattctagattcttcctaac-aactagtgagtcaccaatcc 538  Q
    ||||||||| ||||| ||| || || | |||| || |||||||||  | ||||||||| ||||| ||||||||| ||||||||||||| ||||||    
T  33623937 taatttcattgatgattataaaagagaaagtaaaagatcttatataaaaaatattattttagatccttcctaacaaactagtgagtcatcaatcc 33624031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 661
Target Start/End: Complemental strand, 12260102 - 12260033
Alignment:
Q  592 tataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttata 661  Q
    |||||||||||  ||||| ||| | || |||| ||| |||||||||||||||||||||| ||| ||||||    
T  12260102 tataaaattaaggagatcttgaattttaataatgacaattatgaaattttgttgtattttgatatttata 12260033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 354 - 442
Target Start/End: Original strand, 7439097 - 7439185
Alignment:
Q  354 cataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatg 442  Q
    |||||||||| |||||| |||||||||||||  |||||||||||| |||||||||||||||||||  ||||||| || ||||| |||||    
T  7439097 cataaaaccttcaaaaacacgttgaaatattttagattttagaatttgaataggacgcgcgagaatctcataggatgagaaaagtaatg 7439185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 354 - 436
Target Start/End: Original strand, 31577996 - 31578077
Alignment:
Q  354 cataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaa 436  Q
    ||||||||||||||||| ||||||||||||| | ||||||||||||  |||||| ||||||||||| ||||| ||||||||||    
T  31577996 cataaaacctccaaaaacacgttgaaatatttcggattttagaatccaaatagggcgcgcgagaagctcata-ggtgggaaaa 31578077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 574 - 672
Target Start/End: Complemental strand, 29700095 - 29699996
Alignment:
Q  574 caaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgattttta-tagattgttagta 672  Q
    |||||||||||||||||| || |||||||| ||||||||||| || |||| ||| |||||||||||||| || | ||||||| | | |||||||||||||    
T  29700095 caaaatgaccattatgcacattaaattaaagagatcatgagttttaataaggacaattatgaaattttgctgaacttcgattgtgagtagattgttagta 29699996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 342 - 444
Target Start/End: Original strand, 31767924 - 31768027
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcata-gggtgggaaaaataa 440  Q
    |||||||||||||||||||| | |||||| ||||||||||||| | ||||||| ||||  |||||| |||| ||||||  |||| ||||||||||| |||    
T  31767924 gcataaaaacctcataaaactttcaaaaacacgttgaaatatttcggattttaaaatccaaatagggcgcgtgagaagcgcataggggtgggaaaagtaa 31768023  T
Q  441 tggc 444  Q
    ||||    
T  31768024 tggc 31768027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 574 - 675
Target Start/End: Original strand, 43763181 - 43763276
Alignment:
Q  574 caaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtag 673  Q
    |||||||||| ||||| ||||||||||||  ||||||||||| || |      ||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  43763181 caaaatgaccgttatggatataaaattaaggagatcatgagttttaa------cgattatgaaattttgttgtacttcaatttttatatattgttagtag 43763274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 357 - 445
Target Start/End: Original strand, 38091249 - 38091337
Alignment:
Q  357 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatggct 445  Q
    ||||||| ||| || ||| ||||||||| |  |||||||||||||||||||||||||||||| |||| ||| || ||||| ||||||||    
T  38091249 aaaaccttcaataacacggtgaaatatttcgaattttagaatctgaataggacgcgcgagaacgtcacaggatgtgaaaagtaatggct 38091337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 592 - 675
Target Start/End: Original strand, 39313407 - 39313490
Alignment:
Q  592 tataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtagat 675  Q
    |||||||||||  |||| || ||| || |||| |||| |||||||||||| ||| ||||||||||||||| |||||||||||||    
T  39313407 tataaaattaaggagataattagttttaataaggacggttatgaaattttattggatttcgatttttatatattgttagtagat 39313490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 675
Target Start/End: Complemental strand, 34903266 - 34903160
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    ||||||||||||| ||||||||| |||||||||| |||||||| ||| || |||  |||| ||||||||||||  |  | ||||||||||||| |  |||    
T  34903266 ttttgcaaaatgatcattatgcacataaaattaagaagatcataagttttaatatggacggttatgaaattttactcgacttcgatttttatatacggtt 34903167  T
Q  669 agtagat 675  Q
    |||||||    
T  34903166 agtagat 34903160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 569 - 638
Target Start/End: Original strand, 46997666 - 46997735
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaat 638  Q
    ||||| |||||||| |||||||| ||||||||||  ||||||||||| || | |||||||||||||||||    
T  46997666 ttttgtaaaatgacaattatgcacataaaattaatgagatcatgagttttaaaaaagacgattatgaaat 46997735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 575 - 674
Target Start/End: Original strand, 18208574 - 18208673
Alignment:
Q  575 aaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgttagtaga 674  Q
    |||| ||||||||| || ||||||||||  ||||||||||| || |  | |||||||||||||| || ||||| ||| | ||||||| ||||||||||||    
T  18208574 aaaacgaccattatccacataaaattaaggagatcatgagttttaaagaggacgattatgaaatcttattgtacttcaacttttatatattgttagtaga 18208673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 472 - 537
Target Start/End: Complemental strand, 26247319 - 26247253
Alignment:
Q  472 gagtacaaaatcttatatcgacaatattattctagattcttcctaacaa-ctagtgagtcaccaatc 537  Q
    |||||||| ||||||||| |  ||||||||||||  ||||||||||||| ||||||||||| |||||    
T  26247319 gagtacaatatcttatatagttaatattattctatgttcttcctaacaagctagtgagtcatcaatc 26247253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 570 - 674
Target Start/End: Original strand, 29700492 - 29700593
Alignment:
Q  570 tttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtta 669  Q
    ||||||||||||||||||||||  |||| ||||  ||||   |||| || | || ||  ||||||||||||||||  | ||||||||||||| |||||||    
T  29700492 tttgcaaaatgaccattatgcacgtaaagttaaggagat---gagttttaacaaggaaaattatgaaattttgttaaacttcgatttttatatattgtta 29700588  T
Q  670 gtaga 674  Q
    |||||    
T  29700589 gtaga 29700593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 32556519 - 32556596
Alignment:
Q  350 acctcat-aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagg 427  Q
    ||||||| ||||||||| ||||||||||  |||||| ||||||||| |||| |||||||||| |||||||  |||||||    
T  32556519 acctcataaaaacctcc-aaaatacgttacaatatttcagattttaaaatccgaataggacgtgcgagaaactcatagg 32556596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 675
Target Start/End: Original strand, 43473105 - 43473211
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    |||||||||| ||||||||  || || ||||||| ||||| |||| | || | || ||| ||||| |||||||| || | | ||||||||||| ||||||    
T  43473105 ttttgcaaaaagaccattaaacacatgaaattaagaagataatgatttttaaaaaggacaattataaaattttgctggagtacgatttttatatattgtt 43473204  T
Q  669 agtagat 675  Q
    |||||||    
T  43473205 agtagat 43473211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 669
Target Start/End: Complemental strand, 41771048 - 41770963
Alignment:
Q  584 attatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtta 669  Q
    |||||||| || ||||||| ||||| |||||| || |||| ||  |||||||||||||| || | || |||||||||| |||||||    
T  41771048 attatgcacattaaattaagaagataatgagttttaataaggattattatgaaattttggtggactttgatttttatatattgtta 41770963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 444
Target Start/End: Original strand, 51906955 - 51907044
Alignment:
Q  357 aaaacctccaaaaat-acgttgaaatattccagattttagaatctgaataggacgcgc-gagaaggtcatagggtgggaaaaataatggc 444  Q
    ||||||||||||||  | ||||||||||| | ||||||||||||| || ||| || || |||||| |||| ||||||||||| |||||||    
T  51906955 aaaacctccaaaaaacatgttgaaatatttcggattttagaatctaaacagggcgtgctgagaagctcatcgggtgggaaaagtaatggc 51907044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 344 - 443
Target Start/End: Complemental strand, 37267806 - 37267707
Alignment:
Q  344 ataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatgg 443  Q
    ||||||| |||||||||||||| |||| ||||| ||||||| | ||||||||||||  |||||| | | ||||||| ||||| ||||| |||| ||||||    
T  37267806 ataaaaatctcataaaacctcccaaaacacgttaaaatatttcggattttagaatccaaatagggcacacgagaagctcataaggtggaaaaagtaatgg 37267707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 442
Target Start/End: Complemental strand, 5867999 - 5867900
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 441  Q
    |||||||| || ||||||| ||||||||| ||||||||||||| ||||||||| |||| ||||||  | ||||||||| | |||||| || |||| ||||    
T  5867999 gcataaaacccacataaaatctccaaaaacacgttgaaatatttcagattttaaaatc-gaatagagcacgcgagaagcttatagggcggaaaaagtaat 5867901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 343 - 439
Target Start/End: Complemental strand, 24166887 - 24166791
Alignment:
Q  343 cataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaata 439  Q
    |||||||||  ||||||||||| ||||| | ||||||||||| |  |||| |||||| ||||||| |||| |||||  ||||||||||| |||||||    
T  24166887 cataaaaactccataaaacctctaaaaacatgttgaaatatttcgaatttaagaatccgaatagggcgcgtgagaaactcatagggtggaaaaaata 24166791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 428
Target Start/End: Original strand, 10696366 - 10696452
Alignment:
Q  342 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcataggg 428  Q
    ||||||||||| | |||||||| ||||||||||||||||||||   |||||||||||  ||||||   |||||||||  ||||||||    
T  10696366 gcataaaaaccccgtaaaaccttcaaaaatacgttgaaatattttggattttagaattcgaatagagtgcgcgagaacttcataggg 10696452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 575 - 645
Target Start/End: Original strand, 38858164 - 38858234
Alignment:
Q  575 aaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttg 645  Q
    ||||||||||||||||| || | |||||  ||||||||||| || |||| || ||||||||||||||||||    
T  38858164 aaaatgaccattatgcacatgatattaaggagatcatgagttttaataaggaagattatgaaattttgttg 38858234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 596 - 669
Target Start/End: Complemental strand, 348370 - 348297
Alignment:
Q  596 aaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtta 669  Q
    ||||||| ||||| |||||| || |||| |||||||||||||||||| || | || |||||||||| |||||||    
T  348370 aaattaagaagataatgagttttaataaggacgattatgaaattttggtggactttgatttttatatattgtta 348297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 343 - 407
Target Start/End: Complemental strand, 45203280 - 45203216
Alignment:
Q  343 cataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaatagg 407  Q
    |||||||| | ||||||||||| ||||| || |||||||||| | |||||||||||| |||||||    
T  45203280 cataaaaatcccataaaacctcgaaaaacacattgaaatatttcggattttagaatccgaatagg 45203216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 13378426 - 13378477
Alignment:
Q  357 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaatagga 408  Q
    |||||||||||||| || |||||||||| ||||||||| |||| ||||||||    
T  13378426 aaaacctccaaaaacacattgaaatatttcagattttataatccgaatagga 13378477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 675
Target Start/End: Original strand, 23212694 - 23212800
Alignment:
Q  569 ttttgcaaaatgaccattatgcatataaaattaaaaagatcatgagtcttcataaagacgattatgaaattttgttgtatttcgatttttatagattgtt 668  Q
    ||||||||||| ||||| ||||| || ||||||| |||||  || || || |||  || ||| ||||||||||| || | ||| ||||||||| ||||||    
T  23212694 ttttgcaaaataaccatcatgcacatgaaattaagaagatagtgggttttaatatggatgataatgaaattttgatgaacttcaatttttatatattgtt 23212793  T
Q  669 agtagat 675  Q
    |||||||    
T  23212794 agtagat 23212800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 442
Target Start/End: Complemental strand, 43050193 - 43050109
Alignment:
Q  357 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatg 442  Q
    |||||||||||||  ||||||||| ||| ||||||||| |||| ||||| | || || ||||  |||||||||||||||| |||||    
T  43050193 aaaacctccaaaac-acgttgaaacatttcagattttaaaatccgaataaggcgtgcaagaaactcatagggtgggaaaagtaatg 43050109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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