View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6575_high_2 (Length: 488)
Name: NF6575_high_2
Description: NF6575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6575_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 470
Target Start/End: Original strand, 29689769 - 29690226
Alignment:
| Q |
13 |
catcacatccgaaatcgaacgaaaacacagccaacaacccgaccaaccgccnnnnnnnccactggtagatctagtttggaggtggtgcgggtggctacat |
112 |
Q |
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| T |
29689769 |
catcacatccgaaatcgaacgaaaacacagccaacaacccgaccaactgccaaaaaaaccactggtagatctagtttggaggtggtgcgggtggctacat |
29689868 |
T |
|
| Q |
113 |
cggccaaagagagattggattgaaatgaaaagagggctgcgggtttgactgacgtgcatattttagttgtgttcctcatgcataattttgtggaccacat |
212 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29689869 |
cggccaaagagagattggattgaaaggaaaagaggactgcgggtttgagtgacgtgcatattttagttgtgttcctcatgcataattttgtggaccacat |
29689968 |
T |
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| Q |
213 |
tttaatgttaactaataattaagtaagatatttgacccactattgattttatgcttcacaatataattttaattaataagtagtaagatacgagttctat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29689969 |
tttaatgttaactaataattaagtaagatatttgacccactattgattttatgcttcacaatataattttaattaataagtagtaagatacgagttctat |
29690068 |
T |
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| Q |
313 |
caaattaattaatataagtagtaagatatgtgttctatcnnnnnnnnnnnnnngtcgtaagatatgtgacgcgctattgaacttatcttcattattaatt |
412 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29690069 |
caaattaattaatataagcagtaagatatgtgttctatcaaaaaaagaaaaaagtcgtaagatatgtgacgcgctattgaacttatcttcattattaatt |
29690168 |
T |
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| Q |
413 |
ataaatagaaagcttaacaaactttgaattgatgttnnnnnnngactttgaatagatc |
470 |
Q |
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| T |
29690169 |
ataaatagaaagcttaacaaactttgaattgatgttaaaaaaagactttgaatagatc |
29690226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 37011717 - 37011767
Alignment:
| Q |
13 |
catcacatccgaaatcgaacgaaaacacagccaacaacccgaccaaccgcc |
63 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
37011717 |
catcacatccggtatcgaacgaaaacacaaccaacaacccgaccaaccgcc |
37011767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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