View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6575_high_3 (Length: 422)
Name: NF6575_high_3
Description: NF6575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6575_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 10 - 409
Target Start/End: Complemental strand, 43807077 - 43806678
Alignment:
| Q |
10 |
atatcaccacatccatctaatccacgttccttctatgttggaaccttccttagccaatgcatccgcaatagagtttgcttctctattggtgtgtacaaac |
109 |
Q |
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| T |
43807077 |
atatcaccgcatccatctaatccacgttccttctatgttggaaccttccttagccaatgcatccgcaatagagtttgcttctctattggtgtgtacaaac |
43806978 |
T |
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| Q |
110 |
aagacattagcaaaagaaccagtaaaaacattggcatcacaagaaaaggtatccaattttaaatgaaacgtagttcttacttagaattccagtttagctg |
209 |
Q |
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| T |
43806977 |
aagacattagcaaaagaaccagtaaaaacattggcatcacaagaaaaggtatccaattttaaatgaaaagtagctcttacttagaattccagtttagctg |
43806878 |
T |
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| Q |
210 |
caaaacatctaagctcacattactcatcaaaacaatccacctccaaaacatgatatatcataccaatgaagaaaacaagcaattctgcgtcacatctccg |
309 |
Q |
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| T |
43806877 |
caaaacatctaagctcacattactcatcaaaacaatccacctccaaaacatattatatcataccaatgaagaaaacaagcaattctgcgtcacatctccg |
43806778 |
T |
|
| Q |
310 |
tcacgtgatacaacaggcacgtgtaggccaacgtcttgctaaatacaattgtgcagttcttgcctccttgggctgacatcatttcaacagtcaattattg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43806777 |
tcacgtgatacaacaggcacgtgtaggccaacgtcttgctaaatacaattgtgcagttcttgcctccttgggctgacatcatttcaacagtcaattattg |
43806678 |
T |
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