View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6575_low_4 (Length: 344)
Name: NF6575_low_4
Description: NF6575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6575_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 35228673 - 35228348
Alignment:
| Q |
1 |
atgctaattaagatgatgttgattcttgtttataggtagttgttgggcatttgcaattgtggctgcaatagaaggtattcatcaaataaccacaggaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35228673 |
atgctaattaagatgatgttgattcttgtttataggtagttgttgggcatttgcaactgtggctgcaatagaaggtattcatcaaataaccacaggaaga |
35228574 |
T |
|
| Q |
101 |
ttagtatcactctctgagcaagagctagtggattgtgtgaaaactaatacaactgatggatgcaatggtggttatgtagaagatgcttgtgatttcatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35228573 |
ttagtatcactctctgagcaagagctagtggattgtgtcaaaactaatacaactgatggatgcaatggtggttatgtagaagatgcttgtgatttcatag |
35228474 |
T |
|
| Q |
201 |
ttaaaaaaggaggaataacaagtgaaacaaattacccttatacaagagttgatggtaaatgcaatgttaggaaaggaacctacaatgttgctaaaattaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35228473 |
ttaaaaaaggaggaataacaagtgaaacaaattacccttatacaagggttgatggtaaatgcaatgttaggaaaggaacctacaatgttgctaaaattaa |
35228374 |
T |
|
| Q |
301 |
gggatatgagcatgttcccgccaata |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
35228373 |
gggatatgagcatgttcccgccaata |
35228348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 31176979 - 31176914
Alignment:
| Q |
31 |
tataggtagttgttgggcatttgcaattgtggctgcaatagaaggtattcatcaaataaccacagg |
96 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| | ||||| ||||| || |||||||| ||||| |
|
|
| T |
31176979 |
tataggtagttgttgggcattttcaactgtggcttccatagagggtatccaccaaataacaacagg |
31176914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 29746533 - 29746586
Alignment:
| Q |
39 |
gttgttgggcatttgcaattgtggctgcaatagaaggtattcatcaaataacca |
92 |
Q |
| |
|
|||||||||||||| | | |||||||||||||||||||| || |||||||||| |
|
|
| T |
29746533 |
gttgttgggcattttctacggtggctgcaatagaaggtatccaacaaataacca |
29746586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University