View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6576_high_4 (Length: 596)
Name: NF6576_high_4
Description: NF6576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6576_high_4 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 23)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 102 - 581
Target Start/End: Original strand, 10216648 - 10217123
Alignment:
| Q |
102 |
tgagaggtaccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10216648 |
tgagaggtaccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagat |
10216747 |
T |
|
| Q |
202 |
cacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10216748 |
cacaatgaataatcaattgctcacattcttgatgcagataatgtaatgccgaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttt |
10216847 |
T |
|
| Q |
302 |
tggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgaccttt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10216848 |
tggatgctctgaatttaaaatctcaggatgcaaccattgttcta----agcttccatttttcatgtaataaaaaactagagctttaaattcttgaccttt |
10216943 |
T |
|
| Q |
402 |
gtagtctgtactagaacaacatgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctcca |
501 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10216944 |
gtagtttgtactagaacaacatgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctcca |
10217043 |
T |
|
| Q |
502 |
ttcttttggaggtttaggaccttcacagcaacaacattaacttccgacacaagattcccgctatacacagaaccaaaact |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
10217044 |
ttcttttggaggtttaggaccttcacagcaacaacattaacttctgacacaagattcccgctatacacacaaccaaaact |
10217123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 11048460 - 11049030
Alignment:
| Q |
1 |
taggagaatgcaaagaaacaatggaagatgcaagcatttagaa-------catacctggaggagtgtagccaacggttccttttattccaattgtactag |
93 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
11048460 |
taggagaattcaaagaaacagtggaagatttaagcatttagaaattagaacagacctggaggagcgtagccaatggttccttttattccaattgtactag |
11048559 |
T |
|
| Q |
94 |
tattcttatgagaggtaccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttgg |
193 |
Q |
| |
|
|||| ||| | ||| |||||||| | |||| |||||||||||||||||||||||||||||||| || || ||||||||||| ||||| |
|
|
| T |
11048560 |
tattg------------ccatcggtggctgagacaagttttgcaatgccaaaatcactcacatgagcaaccatgtcgtcgttaagaagaacattacttgg |
11048647 |
T |
|
| Q |
194 |
ctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtcc |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11048648 |
ctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatcaccaaggtcc |
11048747 |
T |
|
| Q |
294 |
aatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattct |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
11048748 |
aatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttcta----agcttccatttttcatgtaatcaaaaactagtgctttaaattct |
11048843 |
T |
|
| Q |
394 |
tgacctttgtagtctgtactagaacaacatgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgc |
493 |
Q |
| |
|
| ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11048844 |
tcacctttgtaatctgtactagaacaacaggttaaaaccttaactaagtttcggtgtctaatgtttttgagtgcattacattcaacaatgaaactcttgc |
11048943 |
T |
|
| Q |
494 |
tagctccattcttttggaggtttaggaccttcacagcaacaacattaacttccgacacaagattcccgctatacacagaaccaaaac |
580 |
Q |
| |
|
|||||||||| ||||||||||| | ||| |||||||||||||||||| |||||||||||||||| || || ||||||||||| |||| |
|
|
| T |
11048944 |
tagctccattgttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaac |
11049030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 581
Target Start/End: Complemental strand, 10605152 - 10604587
Alignment:
| Q |
12 |
aaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtac |
111 |
Q |
| |
|
|||||||||| |||||| |||| |||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
10605152 |
aaagaaacaactgaagattcaagaatttagaacatacctggaggagcatatccaacagttccttttatcccaattgtactagtatttatatgagaggtac |
10605053 |
T |
|
| Q |
112 |
caccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaat |
211 |
Q |
| |
|
||||||||| ||||| | | |||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||||||||||||||| |
|
|
| T |
10605052 |
caccaatggacgagaccagtcttgctatgccaaaatcactcacatgagcaaccatatcatcatcaagtaggacattgcttggctttagatcacaatgaat |
10604953 |
T |
|
| Q |
212 |
aatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctct |
311 |
Q |
| |
|
| |||||||||||||||||||| |||||||| ||||||||||||||||| | ||||||||| || || | |||||||||||| ||| ||||| ||||| |
|
|
| T |
10604952 |
gactaattgctcacattcttgatgaagataatgcaatgcagaagcaacatcaaaaatgatgttaaatcttttaccaaggtccaacgttgttggaggctct |
10604853 |
T |
|
| Q |
312 |
gaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgta |
411 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10604852 |
gcatttaaaatctcaggatgcaaccattgttcta----agcttccatttttcatgtaatcaaaaactagagctttaaattcttgacctttgtaatctgta |
10604757 |
T |
|
| Q |
412 |
ctagaacaacatgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttgga |
511 |
Q |
| |
|
|||||||||||||||||||| | |||| | || |||||||| || ||||||||||||||||||||||||| ||| ||||| ||||| |||||||||| |
|
|
| T |
10604756 |
ctagaacaacatgttaaaacttgaactaaattccggtgtcttatagttttgagtgcattacattcaacaatgaaattcttgtgtgctcccttcttttgga |
10604657 |
T |
|
| Q |
512 |
ggtttaggaccttcacagcaacaacattaacttccgacacaagattcccgctatacacagaaccaaaact |
581 |
Q |
| |
|
|||| |||||||| |||||||| |||||| |||| ||||||||||| || || ||||||||||||||||| |
|
|
| T |
10604656 |
ggttcaggacctttacagcaactacattatcttctgacacaagatttcctctgtacacagaaccaaaact |
10604587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 45 - 581
Target Start/End: Original strand, 10740541 - 10741073
Alignment:
| Q |
45 |
atacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttgctatgccaa |
144 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||| | ||| ||||||||| | |||||| |||||||| | |||||||||||| |
|
|
| T |
10740541 |
atacctggaggagcatagccaacagttccttttattccaattgtactagtttccttgtgagaggtatcgtcaatggctgagacaagtcttgctatgccaa |
10740640 |
T |
|
| Q |
145 |
aatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatg |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | |||||| ||||||||||| || |||||||| |
|
|
| T |
10740641 |
aatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttagatcacaatgaaggaccaattgttcacattcttggtgaagataatg |
10740740 |
T |
|
| Q |
245 |
taatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttct |
344 |
Q |
| |
|
|||||||| || |||||| | ||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
10740741 |
taatgcagtggcgacatcgttcatgatgtttaatctatgaccaaggtccaatgttcttggatgatctgcatttaaaatctcaagatgcaaccattgttct |
10740840 |
T |
|
| Q |
345 |
aagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactagaacaacatgttaaaaccttaactgagttt |
444 |
Q |
| |
|
| ||||||||||||||||||||| ||| || ||||||||||| |||||||||||| |||||||||||||||||||| |||| ||||||| | ||| |
|
|
| T |
10740841 |
a----agcttccatttttcatgtaatcaaaaacaagagctttaaaagtttgacctttgtaatctgtactagaacaacatgtcaaaatcttaactaaattt |
10740936 |
T |
|
| Q |
445 |
cggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtttaggaccttcacagcaacaacattaactt |
544 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||| |||||| ||||||| |||||| | |||||| || ||||||||||| ||| |
|
|
| T |
10740937 |
cggtgtctaatatttttgagtgcattacattcaacaatgaaactcttgtgagctcccttctttttgaggttcaagacctttacggcaacaacattgtctt |
10741036 |
T |
|
| Q |
545 |
ccgacacaagattcccgctatacacagaaccaaaact |
581 |
Q |
| |
|
| | ||||||||| || | ||||||||||||||||| |
|
|
| T |
10741037 |
ctgtcacaagatttcctttgtacacagaaccaaaact |
10741073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 36 - 581
Target Start/End: Complemental strand, 10612086 - 10611545
Alignment:
| Q |
36 |
atttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttg |
135 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||| | ||| |
|
|
| T |
10612086 |
atttagaacatacctggaggagcatagccaacagtccctttaattccaattgtcttagtattcttatgagaggaaccaccaatggccgagacaagtcttg |
10611987 |
T |
|
| Q |
136 |
ctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatg |
235 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||| || || |||||||||||||||| ||||||||||| | ||||||||||||||| | ||| |
|
|
| T |
10611986 |
ctatgccaaaatcactcacatgtgcaaccatatcatcatcaagtaggacattgcttggctttatatcacaatgaaggaccaattgctcacattcattatg |
10611887 |
T |
|
| Q |
236 |
cagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaac |
335 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||| || ||||||| |||||||| || ||||||||| |
|
|
| T |
10611886 |
aagataatgtaatgcagaaccaacatccataatgatgtttaatctatgactgaggtccaatgttgctgtatgctcttcatttaaaaccttgggatgcaac |
10611787 |
T |
|
| Q |
336 |
cattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactagaacaacatgttaaaacctta |
435 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
10611786 |
cattgttcta----agcttccatttttcatgtaatcaaaaactagggctttaaattcttgacctttgtaatctgtactagaacaacatgttaaaatctta |
10611691 |
T |
|
| Q |
436 |
actgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtttaggaccttcacagcaacaa |
535 |
Q |
| |
|
||| | |||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||| ||||||||||| | |||||| | |||||||| |
|
|
| T |
10611690 |
actaaatttcggtgtctaataaattttagtgcattacattcaacaatgaaactcttgtgagctccattgttttggaggttgaagacctttatagcaacaa |
10611591 |
T |
|
| Q |
536 |
cattaacttccgacacaagattcccgctatacacagaaccaaaact |
581 |
Q |
| |
|
|||| |||| ||||||||||| || || |||||| ||||||||| |
|
|
| T |
10611590 |
cattgtcttctgacacaagatttcctctgtacacatcaccaaaact |
10611545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 23 - 557
Target Start/End: Complemental strand, 10565416 - 10564886
Alignment:
| Q |
23 |
ggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggtt |
122 |
Q |
| |
|
||||||| |||||||||| |||||||| ||||||| ||||| || |||||||| | | |||||||||| ||||| |||| |||||||| ||||| | | |
|
|
| T |
10565416 |
ggaagattcaagcatttaaaacataccaggaggagaatagcctactgttcctttaacttcaattgtacttgtatttttataagaggtactgccaatagct |
10565317 |
T |
|
| Q |
123 |
gagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgct |
222 |
Q |
| |
|
||||| | | |||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||| | ||||| | |
|
|
| T |
10565316 |
gagacgagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggatattgcttggctttagatcacaatgaatgaccaattctt |
10565217 |
T |
|
| Q |
223 |
cacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaat |
322 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||| |||| ||| |||||| ||| |||||||||| |||| | |||| ||||||||| |
|
|
| T |
10565216 |
cacattctctatgaagataatgtaatgcagaagcaacatcgataataatgtataatctatgagcaaagtccaatgttgttgggggttctgcatttaaaat |
10565117 |
T |
|
| Q |
323 |
ctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactagaacaaca |
422 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||| | ||| || |||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
10565116 |
ctcaggatgcaaccattgatcta----agcttccatttttcatgtactcaaaaaccagagctttaaattcttgacctttgtaatctgtacttgaacaaca |
10565021 |
T |
|
| Q |
423 |
tgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtttaggacc |
522 |
Q |
| |
|
||||||||||||||| | |||||||||| ||| |||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| |||||| |
|
|
| T |
10565020 |
ggttaaaaccttaactaaatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgagctcccttcttttggaggttcaggacc |
10564921 |
T |
|
| Q |
523 |
ttcacagcaacaacattaacttccgacacaagatt |
557 |
Q |
| |
|
|| || |||||||||||| |||| ||||||||||| |
|
|
| T |
10564920 |
tttacggcaacaacattatcttctgacacaagatt |
10564886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 1 - 581
Target Start/End: Original strand, 10746821 - 10747389
Alignment:
| Q |
1 |
taggagaatgcaaagaaacaatggaagatgcaagcatttagaacata----cctggaggagtgtagccaacggttccttttattccaattgtactagtat |
96 |
Q |
| |
|
|||||| || |||||||||||||||||| |||| |||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10746821 |
taggagtattcaaagaaacaatggaagactcaagaatttagaacatatatacctggaggagcatagccaacagttccttttattccaattgtactagtat |
10746920 |
T |
|
| Q |
97 |
tcttatgagaggtaccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctt |
196 |
Q |
| |
|
| |||| | ||| |||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
10746921 |
tg------------ccactagtggctgagacaagttttgctatgccaaaatcagtcacatgagcaaccatgtcatcatcaagaaggacattgcttggctt |
10747008 |
T |
|
| Q |
197 |
tagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaat |
296 |
Q |
| |
|
|||||||| ||||| | ||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||| || || |||||||| || |
|
|
| T |
10747009 |
gagatcacagtgaatgactaattgctcacattcttggtgaagataatgtaatgttgaagcaacatcgataatgatgtttaatctgtggccaaggtctaac |
10747108 |
T |
|
| Q |
297 |
gtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttga |
396 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| || ||| |
|
|
| T |
10747109 |
gtttttggatgctcttcatttaaaaactcaggatgcaaccattgttcta----agcttccattttttatgtaataaaaaactagagctttaaactcctga |
10747204 |
T |
|
| Q |
397 |
cctttgtagtctgtactagaacaacatgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctag |
496 |
Q |
| |
|
||||||| ||| ||||||||||||| ||||||| ||||||| | ||||||||||||||||| |||||| |||||||||||||||| ||||||||| || |
|
|
| T |
10747205 |
actttgtaatctatactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgag |
10747304 |
T |
|
| Q |
497 |
ctccattcttttggaggtttaggaccttcacagcaacaacattaacttccgacacaagattcccgctatacacagaaccaaaact |
581 |
Q |
| |
|
|||| |||||||| ||||||||||| || || |||||| ||||| ||| ||||||||||| || | ||||| ||||||||||| |
|
|
| T |
10747305 |
ctcccttcttttgaaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaact |
10747389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 45 - 581
Target Start/End: Original strand, 10716782 - 10717314
Alignment:
| Q |
45 |
atacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttgctatgccaa |
144 |
Q |
| |
|
|||||||| |||| ||||||| | | ||||||||||||| |||||| |||| ||||| ||||||| ||||| ||||||| | |||||||||||| |
|
|
| T |
10716782 |
atacctgggggagcatagccaatgctcccttttattccaactgtactggtatccttatcagaggtaatgccaatatccgagacaagttttgctatgccaa |
10716881 |
T |
|
| Q |
145 |
aatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatg |
244 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || ||||| ||||||||||| || |||||||| |
|
|
| T |
10716882 |
aatcagtcacatgagcaaccatgtcatcatcaagaaggacattgcttggcttaagatcacaatgaatgattaattgttcacattcttggtgaagataatg |
10716981 |
T |
|
| Q |
245 |
taatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttct |
344 |
Q |
| |
|
|||||||| || |||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
10716982 |
taatgcagtggcgacatcgatcatgatgtttaatctatgaccaaggtccaatgttcttggatgatctgcatttaaaatctcaagatgcaaccattgttct |
10717081 |
T |
|
| Q |
345 |
aagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactagaacaacatgttaaaaccttaactgagttt |
444 |
Q |
| |
|
| ||||||||||||||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||||||||||||| | ||| ||| ||| |
|
|
| T |
10717082 |
a----agcttccatttttcatgtaatcaaaaactagagctttaaaagtttgacctttgtaatctgtactagaacaacatgttaatatcttcactagattt |
10717177 |
T |
|
| Q |
445 |
cggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtttaggaccttcacagcaacaacattaactt |
544 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||| ||||||||| |||||| ||||||| |||||| | |||||| || ||||||||||| ||| |
|
|
| T |
10717178 |
cggtgtctgatattttttagtgcattacattcaacaatgaaactcttgtgagctcccttctttttgaggttcaagacctttacggcaacaacattgtctt |
10717277 |
T |
|
| Q |
545 |
ccgacacaagattcccgctatacacagaaccaaaact |
581 |
Q |
| |
|
| ||||||||||| || | ||||||||||||||||| |
|
|
| T |
10717278 |
ctgacacaagatttcctttgtacacagaaccaaaact |
10717314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 36 - 540
Target Start/End: Complemental strand, 10581372 - 10580880
Alignment:
| Q |
36 |
atttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttg |
135 |
Q |
| |
|
||||| |||||||| |||||| ||||||| ||||||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||||| | ||| |
|
|
| T |
10581372 |
atttaaaacatacccagaggagcatagccaattgttccttttattccagttgtactagtattcttatgagtggtaccacaaatggctgagacaagtcttg |
10581273 |
T |
|
| Q |
136 |
ctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatg |
235 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||| | |||||||||||||||| |||| |
|
|
| T |
10581272 |
ctgtgccaaaatcactcacatga----ccatgtcatcatcaagaagtg---tgcttggctttagatcacaacgaaggaccaattgctcacattctcgatg |
10581180 |
T |
|
| Q |
236 |
cagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaac |
335 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| || || | |||| | ||||| ||| |||||||||| |
|
|
| T |
10581179 |
aagataatgtaatgcagaagcaacatccataatgatgtttaatctatgaccaaggttcaatgttgttagaggttctgcacttaaa-tctgaggatgcaac |
10581081 |
T |
|
| Q |
336 |
cattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactagaacaacatgttaaaacctta |
435 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
10581080 |
cattgttctaagct----tccatttttcatgtaataaaaaactaaagctttaaattcttggcctttgtaatttgtactagaacaacatgttagaaccttg |
10580985 |
T |
|
| Q |
436 |
actgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtttaggaccttcacagcaacaa |
535 |
Q |
| |
|
||| | ||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| | |||||| || ||||||| |
|
|
| T |
10580984 |
actaaattttggtgtctaatatttttgagtgcattacattcaacaataaaactcttgtgagctcctttcttttggaggttcaagacctttactgcaacaa |
10580885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 45 - 570
Target Start/End: Original strand, 10762975 - 10763496
Alignment:
| Q |
45 |
atacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatgg-ttgagacaaatgttgctatgcca |
143 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||| |||||||||| | |||| ||||||||| | |||||| |||| || | | ||||||| ||| |
|
|
| T |
10762975 |
atacctggaggagcatagccaacagttccttttattccagttgtactagtttccttaagagaggtacaagcaatggcttga-actagtcttgctattcca |
10763073 |
T |
|
| Q |
144 |
aaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataat |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||||||| |||| ||||||| |
|
|
| T |
10763074 |
aaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttagatcacaatgaaggaccaattgctcacattctcgatgaagataat |
10763173 |
T |
|
| Q |
244 |
gtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttc |
343 |
Q |
| |
|
||||||||||||||||||| |||||||| || | || ||| |||| ||||||||| ||||| ||||| ||||||| || ||| |||| |||| |||| |
|
|
| T |
10763174 |
gtaatgcagaagcaacatcaataatgatattcagtctttgatcaagatccaatgttgttggagtctctgcatttaaattcctagggtgcagccatcgttc |
10763273 |
T |
|
| Q |
344 |
taagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactagaacaacatgttaaaaccttaactgagtt |
443 |
Q |
| |
|
|| ||||||||||||||||||||| ||| || ||||||||||||||||||||||| || || |||||||||||||||||||||| ||||||| | || |
|
|
| T |
10763274 |
ta----agcttccatttttcatgtaatcaaaaaccagagctttaaattcttgacctttataatcagtactagaacaacatgttaaaatcttaactaaatt |
10763369 |
T |
|
| Q |
444 |
tcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtttaggaccttcacagcaacaacattaact |
543 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||||||| ||||||||| ||||||||| ||||||||||| | ||| || | |||||||| ||| || |
|
|
| T |
10763370 |
ccggtgttgaatattttttagtgcattacattcaacaatgaaactcttgtgagctccattgttttggaggttgaagacttttatagcaacaatattgtct |
10763469 |
T |
|
| Q |
544 |
tccgacacaagattcccgctatacaca |
570 |
Q |
| |
|
|| ||||||||||| || || |||||| |
|
|
| T |
10763470 |
tctgacacaagatttcctctgtacaca |
10763496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 46 - 534
Target Start/End: Original strand, 10588273 - 10588757
Alignment:
| Q |
46 |
tacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttgctatgccaaa |
145 |
Q |
| |
|
|||||||||||| |||||||| || ||||| ||||||||||||||||| | || |||||| || | |||| |||||||| | ||||||||||||| |
|
|
| T |
10588273 |
tacctggaggagcatagccaacagtccctttaattccaattgtactagtttcctgatgagatgtgtcttcaataactgagacaagtcttgctatgccaaa |
10588372 |
T |
|
| Q |
146 |
atcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgt |
245 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| || ||||||||||||| ||||||||||| | || ||||||||||| ||||| ||||||||| |
|
|
| T |
10588373 |
atcactcacatgagcaaccatgtcatcgtcaagaaggacgttgcttggctttatatcacaatgaaggaccacctgctcacattcatgatgaagataatgt |
10588472 |
T |
|
| Q |
246 |
aatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttcta |
345 |
Q |
| |
|
| ||||||||||| ||||||| |||| ||||| |||||| |||||||||| ||| |||||||||||||||| | | || ||||| | ||||||||||| |
|
|
| T |
10588473 |
agtgcagaagcaatatcgatagtgatatttaatctatgaacaaggtccaacgttcttggatgctctgaattcacattccatggatgaagccattgttcta |
10588572 |
T |
|
| Q |
346 |
agctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactagaacaacatgttaaaaccttaactgagtttc |
445 |
Q |
| |
|
| ||||||||||||||||||| ||| |||| ||||||||||||||||||||| || || |||| ||||||||||||||||| ||| | | |||| |
|
|
| T |
10588573 |
----aacttccatttttcatgtaatcaaaaactaaagctttaaattcttgacctttataatcagtaccagaacaacatgttaaaatcttggccaaatttc |
10588668 |
T |
|
| Q |
446 |
ggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtttaggaccttcacagcaaca |
534 |
Q |
| |
|
| ||||||| || ||||||||||||||||| ||||||||||||| |||||| ||||||| ||||| || ||||| | ||||||| |
|
|
| T |
10588669 |
gatgtctaacattcttgagtgcattacattcggcaataaaactcttatcagctcccttctttttaaggttcagaaccttgatagcaaca |
10588757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 43 - 578
Target Start/End: Complemental strand, 10559271 - 10558740
Alignment:
| Q |
43 |
acatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttgctatgcc |
142 |
Q |
| |
|
||||||||||||||| |||||||| || ||||||||||||||||| ||||| | |||| |||| |||| | | |||||| | | |||||||||| |
|
|
| T |
10559271 |
acatacctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatataccgtccgcagatgagacgagtcttgctatgcc |
10559172 |
T |
|
| Q |
143 |
aaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataa |
242 |
Q |
| |
|
||||||||||||||||||||| |||| |||| | ||| |||||||||||||||||||||||||||| | |||||||||||||||| |||| |||||| |
|
|
| T |
10559171 |
aaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatcacaatgaaggaccaattgctcacattctcgatgaagataa |
10559072 |
T |
|
| Q |
243 |
tgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgtt |
342 |
Q |
| |
|
|||||||||||||||||||| |||||||| || | || ||| ||| ||||||| | |||| |||||| ||| | ||| | ||||||||| | || |
|
|
| T |
10559071 |
tgtaatgcagaagcaacatcaataatgatattcagtctttgattaagatccaatgctcttggttgctctacattcatcatccttgaatgcaaccagtttt |
10558972 |
T |
|
| Q |
343 |
ctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactagaacaacatgttaaaaccttaactgagt |
442 |
Q |
| |
|
||||||| ||||||||||||||| | ||| ||||||||||| ||||| ||||||||||| || ||||||||||||| ||||||| |||||| | |
|
|
| T |
10558971 |
ctaagct----tccatttttcatgtattcaaaaactagagctttgaattcctgacctttgtaatcaatactagaacaacaagttaaaatcttaaccagat |
10558876 |
T |
|
| Q |
443 |
ttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtttaggaccttcacagcaacaacattaac |
542 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||| | |
|
|
| T |
10558875 |
ttcgatgtctaatattttttagtgcattacattcggtaataaaactcttgtgagctccattcttttcaaggtccaggaccttcacagcaataactttatc |
10558776 |
T |
|
| Q |
543 |
ttccgacacaagattcccgctatacacagaaccaaa |
578 |
Q |
| |
|
||| |||| |||||| || ||||||| |||||||| |
|
|
| T |
10558775 |
ttctgacataagatttcctttatacaccgaaccaaa |
10558740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 45 - 578
Target Start/End: Complemental strand, 7193372 - 7192843
Alignment:
| Q |
45 |
atacctggaggagtgtagccaacggttccttttattccaattgtactagtattctt-atgagaggtaccaccaatggttgagacaaatgttgctatgcca |
143 |
Q |
| |
|
||||||||||||| ||||||| || ||||| ||||||||||||||||| |||| ||||||||| | |||| |||||||| | ||||||||||| |
|
|
| T |
7193372 |
atacctggaggagcatagccaatagtccctttaattccaattgtactagt-ttctcgatgagaggtgtcgtcaataactgagacaagtcttgctatgcca |
7193274 |
T |
|
| Q |
144 |
aaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataat |
243 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| |||| || |||| |
|
|
| T |
7193273 |
aaatcactcacatgagcaaccatgtcatcgtcaagaaggacattgcttggctttagatcacaatgaatgatcgattgctcacattcaagatgaaggtaat |
7193174 |
T |
|
| Q |
244 |
gtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaa-atctcaggatgcaaccattgtt |
342 |
Q |
| |
|
||||| || | |||| ||| | | ||| || || || ||| |||||||||| ||| || ||| |||| ||| | |||| |||||| | |||||||| |
|
|
| T |
7193173 |
gtaatacaaaggcaatatcaacagcgatattcaatctttgatcaaggtccaacgttctttgattctctacattcactgatct-aggatgtagccattgtt |
7193075 |
T |
|
| Q |
343 |
ctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactagaacaacatgttaaaaccttaactgagt |
442 |
Q |
| |
|
||||||| ||| || |||||||| | ||| |||| |||||||||||||||||||||||| |||||||| ||||||||||| |||| |||||| | | |
|
|
| T |
7193074 |
ctaagct----tccgttgttcatgtattcaaagactaaagctttaaattcttgacctttgtaatctgtactggaacaacatgtcaaaatcttaaccaaat |
7192979 |
T |
|
| Q |
443 |
ttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtttaggaccttcacagcaacaacattaac |
542 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||||| |||| ||||||||| |||||| |||||||| ||||| | ||||||||| |||||||| ||| | |
|
|
| T |
7192978 |
ttcgatgtctaatattttttagtgcattacattcagcaatgaaactcttgtgagctcccttcttttgaaggttcatgaccttcacggcaacaactttatc |
7192879 |
T |
|
| Q |
543 |
ttccgacacaagattcccgctatacacagaaccaaa |
578 |
Q |
| |
|
||| || ||||||| || | |||||||||||||| |
|
|
| T |
7192878 |
ttctgattcaagatttcctttgtacacagaaccaaa |
7192843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 133 - 575
Target Start/End: Original strand, 19605795 - 19606233
Alignment:
| Q |
133 |
ttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttg |
232 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || || || | | ||| |||||||||||||||||||||||||||| | ||||||||||||||| || |
|
|
| T |
19605795 |
ttgctatgccaaaatcactcacatgtgcaacgatatcgtcgtcaataaggacattgcttggctttagatcacaatgaaggaccaattgctcacattcatg |
19605894 |
T |
|
| Q |
233 |
atgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgc |
332 |
Q |
| |
|
||| || |||||||||||||||| |||||||| || ||| ||||| || || ||| | ||||||| ||||||| |||| ||| | || | |||||| |
|
|
| T |
19605895 |
atgaaggtaatgtaatgcagaagaaacatcgacaaggatatttaatctttgctcaaacttcaatgttcttggatgatctgcattcattgtcccgggatgc |
19605994 |
T |
|
| Q |
333 |
aaccattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactagaacaacatgttaaaacc |
432 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| | ||| ||||||||||| |||||| ||||||||| || ||||||||||||| ||||||| | |
|
|
| T |
19605995 |
aaccattgttctaagct----tccatttctcatgtactcaaaaactagagctttgaattctagacctttgttatcaatactagaacaacaagttaaaatc |
19606090 |
T |
|
| Q |
433 |
ttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtttaggaccttcacagcaa |
532 |
Q |
| |
|
|||||| | ||||| |||||||| |||||||| |||||||||||| ||||||||||||| |||||| ||||||| ||||| |||||||| ||||||| |
|
|
| T |
19606091 |
ttaactaaatttcgatgtctaatatttttgagagcattacattcagtaataaaactcttgtgagctcccttcttttcaaggttcaggaccttaacagcaa |
19606190 |
T |
|
| Q |
533 |
caacattaacttccgacacaagattcccgctatacacagaacc |
575 |
Q |
| |
|
||| ||| |||| |||| |||||| || ||||||| ||||| |
|
|
| T |
19606191 |
taactttatcttctgacataagatttcctttatacacggaacc |
19606233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 85 - 536
Target Start/End: Original strand, 9836210 - 9836657
Alignment:
| Q |
85 |
ttgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaac |
184 |
Q |
| |
|
|||||||||| | ||||||||||||||| |||||| ||||| || | |||||||||||||||||||||| ||||||||||||| ||||| ||||| | |
|
|
| T |
9836210 |
ttgtactagtttccttatgagaggtaccgtcaatggctgagataagtcttgctatgccaaaatcactcacgtgagcaaccatgttatcatcgagaaggat |
9836309 |
T |
|
| Q |
185 |
attgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatga |
284 |
Q |
| |
|
||||||||||| | |||||||||||| | || |||||||||||| ||| |||||||||||||||||||||| ||| || ||| |||| || ||| |
|
|
| T |
9836310 |
gttgcttggcttgatatcacaatgaatgaccacttgctcacattcacaatgaagataatgtaatgcagaagcaatatcaatggagatatttagtctttga |
9836409 |
T |
|
| Q |
285 |
ccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagct |
384 |
Q |
| |
|
|||||| ||||||| | |||| |||||||| | || |||| | ||||||||||||||| ||||||||||||||||| ||| |||| |||| |
|
|
| T |
9836410 |
acaaggttcaatgttctaggatactctgaatccactgtccagggataaagccattgttctaagct----tccatttttcatgtaatcaaaaactaaagct |
9836505 |
T |
|
| Q |
385 |
ttaaattcttgacctttgtagtctgtactagaacaacatgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataa |
484 |
Q |
| |
|
||||||||| |||||| || || |||||||||||||||||| |||||| || | ||||| |||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
9836506 |
ttaaattctccacctttataatcaatactagaacaacatgttataaccttgaccaaatttcgatgtctaatatttttgagtgcattacattcagcaataa |
9836605 |
T |
|
| Q |
485 |
aactcttgctagctccattcttttggaggtttaggaccttcacagcaacaac |
536 |
Q |
| |
|
||||||| |||||| ||||||| |||||| || ||||| | ||||||||| |
|
|
| T |
9836606 |
aactcttatgagctcccttctttttgaggttcagaacctttatagcaacaac |
9836657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 46 - 581
Target Start/End: Original strand, 10652045 - 10652576
Alignment:
| Q |
46 |
tacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttgctatgccaaa |
145 |
Q |
| |
|
|||||||||||| |||||||| || ||||| ||||||||||||||||| | ||| | ||||||| |||||| |||||||| | ||||||||||||| |
|
|
| T |
10652045 |
tacctggaggagcatagccaacagtccctttaattccaattgtactagtttccttgttagaggtattgtcaatggctgagacaagtcttgctatgccaaa |
10652144 |
T |
|
| Q |
146 |
atcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgt |
245 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||| | | |||||||||||| ||||| || |||||| |
|
|
| T |
10652145 |
atcactcacatgagcaaccatgtcgtcatcaagaaggacattacttggctttagatcacaatgaatgaccgcttgctcacattcatgatgaaggtaatgt |
10652244 |
T |
|
| Q |
246 |
aatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttcta |
345 |
Q |
| |
|
||| ||||||||| || | |||||| || | | ||| |||||||||| || || || | ||| ||| | || | ||||| | ||||||||||| |
|
|
| T |
10652245 |
aatacagaagcaatgtcaacaatgatattcagtcgttgatcaaggtccaacattctttgaatccctgcattcattatacctggatgtagccattgttcta |
10652344 |
T |
|
| Q |
346 |
agctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactagaacaacatgttaaaaccttaactgagtttc |
445 |
Q |
| |
|
| |||| || |||||||| | |||||||| ||| ||||| |||||||||||||| || ||||| ||||||||||| ||||||||||| | |||| |
|
|
| T |
10652345 |
----ggtttccgttgttcatgtattcaaacactaaagccttaaactcttgacctttgtaatcggtactcgaacaacatgtcaaaaccttaaccaaatttc |
10652440 |
T |
|
| Q |
446 |
ggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtttaggaccttcacagcaacaacattaacttc |
545 |
Q |
| |
|
|| || || ||||| ||||||||||||||||||| || |||||| || ||| || ||||| ||||| |||||||| | |||||||| ||| |||| |
|
|
| T |
10652441 |
tatgcctcatattttttagtgcattacattcaacaacgaagctcttgtgagatccctttttttgaaggttcaggacctttatggcaacaactttatcttc |
10652540 |
T |
|
| Q |
546 |
cgacacaagattcccgctatacacagaaccaaaact |
581 |
Q |
| |
|
|| ||||||| || | ||||||||||||||||| |
|
|
| T |
10652541 |
tgatgcaagatttcctttgtacacagaaccaaaact |
10652576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 39 - 524
Target Start/End: Original strand, 10659921 - 10660402
Alignment:
| Q |
39 |
tagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttgcta |
138 |
Q |
| |
|
||||| ||||||||||||| |||||||| || ||||| ||||||||||||||| | ||| ||||||||| | |||||| |||||||| | |||||| |
|
|
| T |
10659921 |
tagaaaatacctggaggagcatagccaacagtccctttaattccaattgtactaaattccttgtgagaggtatcgtcaatggctgagacaagtcttgcta |
10660020 |
T |
|
| Q |
139 |
tgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcag |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||||||||| | | |||||||||||| ||||| || |
|
|
| T |
10660021 |
tgccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggacattacttggctttagatcacaatgaatgaccgcttgctcacattcgtgatgaag |
10660120 |
T |
|
| Q |
239 |
ataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccat |
338 |
Q |
| |
|
||||||||| || ||||| || | |||||| || | | ||| |||||||||| | || || | ||| ||| | || | ||||| | |||| |
|
|
| T |
10660121 |
gtaatgtaatacactagcaatgtcaacaatgatattcagtcgttgatcaaggtccaacaatctttgaatccctgcattcattatacctggatgtagccat |
10660220 |
T |
|
| Q |
339 |
tgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactagaacaacatgttaaaaccttaact |
438 |
Q |
| |
|
||||||| ||||||||| |||||||| | |||||||| ||| ||||| |||||||||||||| |||||||| ||||||||||| |||||||| || |
|
|
| T |
10660221 |
tgttcta----ggcttccattgttcatgtattcaaacactaaagccttaaactcttgacctttgtaatctgtacttgaacaacatgtcaaaaccttgacc |
10660316 |
T |
|
| Q |
439 |
gagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtttaggacctt |
524 |
Q |
| |
|
| |||| || || || ||||| |||||||||||||||||||| || |||||| |||||| || ||||| ||||| || ||||| |
|
|
| T |
10660317 |
aaatttctatgcctcatattttttagtgcattacattcaacaatgaagctcttgtgagctcccttattttgaaggttcagaacctt |
10660402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 252 - 508
Target Start/End: Complemental strand, 9825261 - 9825008
Alignment:
| Q |
252 |
gaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctag |
351 |
Q |
| |
|
||||||||||| |||||||| || || || ||| |||| ||||||||| | ||||||||| ||| ||| |||| |||||||||||||||||| |
|
|
| T |
9825261 |
gaagcaacatcaataatgatattcaatctttgatcaagatccaatgttctaggatgctctacattctctatccttggattcaaccattgttctaagct-- |
9825164 |
T |
|
| Q |
352 |
cttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactagaacaacatgttaaaaccttaactgagtttcggtgtc |
451 |
Q |
| |
|
| ||||||| |||||| | ||| ||||||||||| |||||||| |||||||| || |||||||| |||||||||||| |||||| | ||||| |||| |
|
|
| T |
9825163 |
-tcccattttgcatgtactcaaaaactagagctttgaattcttgccctttgtaatcgatactagaaaaacatgttaaaatcttaaccaaatttcgatgtc |
9825065 |
T |
|
| Q |
452 |
taatgtttttgagtgcattacattcaacaataaaactcttgctagctccattctttt |
508 |
Q |
| |
|
|||| ||||||||| |||||||||| ||||||||||||| |||||| ||||||| |
|
|
| T |
9825064 |
taatatttttgagttcattacattcggtaataaaactcttgtgagctcccttctttt |
9825008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 10216578 - 10216648
Alignment:
| Q |
1 |
taggagaatgcaaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggtt |
71 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10216578 |
taggagaattcaaagaaacaatggaagatttaagcatttagaacatacctggaggagtgtagccaacggtt |
10216648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 350 - 492
Target Start/End: Original strand, 9850843 - 9850985
Alignment:
| Q |
350 |
agcttccatttttcatgtaataaaacactagagc-tttaaattcttgacctttgtagtctgtactagaacaacatgttaaaaccttaactgagtttcggt |
448 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||| ||| ||||| || |||||||| || ||||||||||| | ||||||| |||||| | ||||| | |
|
|
| T |
9850843 |
agcttccatttatcatgtactaaaaaactagagcttttgaattcatgccctttgtaatcgatactagaacaagaagttaaaatcttaaccaaatttcgat |
9850942 |
T |
|
| Q |
449 |
gtctaatgtttttgagtgcattacattcaacaataaaactcttg |
492 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||||||||||| |
|
|
| T |
9850943 |
gtctaat-attttgagggcattacattccgtaataaaactcttg |
9850985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 353 - 521
Target Start/End: Complemental strand, 10550847 - 10550679
Alignment:
| Q |
353 |
ttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactagaacaacatgttaaaaccttaactgagtttcggtgtct |
452 |
Q |
| |
|
|||||||| ||||||| | ||| || ||||||||||| || |||||||| ||||| || |||||||| || |||| |||||| |||| ||| || |
|
|
| T |
10550847 |
ttccatttctcatgtactcaaatacaagagctttaaactcacttcctttgtaatctgtgctggaacaacaagtcaaaattttaactagatttctgtgcct |
10550748 |
T |
|
| Q |
453 |
aatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtttaggac |
521 |
Q |
| |
|
||| ||||| ||||||||||||||| |||| ||||||||| | |||| ||||||| ||||||||||| |
|
|
| T |
10550747 |
aatattttttagtgcattacattcagcaatgaaactcttgtgaactcccttctttttaaggtttaggac |
10550679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 10582388 - 10582307
Alignment:
| Q |
12 |
aaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactag |
93 |
Q |
| |
|
|||||||||||||||||| |||| ||||| || || || || ||| |||||||| ||||||||| | ||||||||||||| |
|
|
| T |
10582388 |
aaagaaacaatggaagattcaagactttagtacgtatctagaagagcatagccaactgttccttttgtcccaattgtactag |
10582307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 9825374 - 9825270
Alignment:
| Q |
122 |
tgagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgc |
221 |
Q |
| |
|
|||||||| | |||| ||||||||||||||| | |||| ||| || || |||| | ||| | ||| |||||||||| ||||||||||| || |||||| |
|
|
| T |
9825374 |
tgagacaagtcttgcaatgccaaaatcactcgcctgagaaacaatatcttcatcaacaaggatattacttggctttatatcacaatgaaggattaattgc |
9825275 |
T |
|
| Q |
222 |
tcaca |
226 |
Q |
| |
|
||||| |
|
|
| T |
9825274 |
tcaca |
9825270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 270; Significance: 1e-150; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 11 - 545
Target Start/End: Complemental strand, 12899971 - 12899441
Alignment:
| Q |
11 |
caaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggta |
110 |
Q |
| |
|
|||| |||||||||||||| |||| ||||| |||||||| ||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12899971 |
caaaaaaacaatggaagattcaagaatttaaaacatacccggaggagcataaccaactgttccttttattccaattgtgctagtattcttatgagaggta |
12899872 |
T |
|
| Q |
111 |
ccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaa |
210 |
Q |
| |
|
||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
12899871 |
ccagaaattgttgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttatatcacaatgaa |
12899772 |
T |
|
| Q |
211 |
taatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctc |
310 |
Q |
| |
|
| ||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| | | |
|
|
| T |
12899771 |
agactaattgctcacattctcgatgaagataatgtaatgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttggaggatt |
12899672 |
T |
|
| Q |
311 |
tgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgt |
410 |
Q |
| |
|
|| ||| ||| |||| ||||| ||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| | ||| |
|
|
| T |
12899671 |
tgcattcaaagtctcgggatgtaaccattgttcta----agcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgt |
12899576 |
T |
|
| Q |
411 |
actagaacaacatgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttgg |
510 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| | ||| ||||||||| ||| || || ||||| |
|
|
| T |
12899575 |
gctagaacaacatgttaaaaccttaaccaaatttcggtgtcgaatgtttttgagtgcattacattctaaaatgaaactcttgtgagcaccctttttttgc |
12899476 |
T |
|
| Q |
511 |
aggtttaggaccttcacagcaacaacattaacttc |
545 |
Q |
| |
|
|| || | |||||| || |||||||||||| |||| |
|
|
| T |
12899475 |
agattcaagacctttactgcaacaacattatcttc |
12899441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 551
Target Start/End: Complemental strand, 12932675 - 12932144
Alignment:
| Q |
16 |
aaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccacc |
115 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||| || |||| || ||||| |||||||||| ||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
12932675 |
aaacaatggaagattcaagaatttaaaacatacccggtggagcataaccaactgttccttttactccgattgtgctagtattcttattagaggtaccgga |
12932576 |
T |
|
| Q |
116 |
aatggttgagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatc |
215 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| || |
|
|
| T |
12932575 |
aatggttgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatgaaggatt |
12932476 |
T |
|
| Q |
216 |
aattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaat |
315 |
Q |
| |
|
|| |||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| | | || || |
|
|
| T |
12932475 |
aactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttggaggatttgcat |
12932376 |
T |
|
| Q |
316 |
ttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactag |
415 |
Q |
| |
|
| ||| |||||||||| ||||| ||||||| ||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||| | ||| |||| |
|
|
| T |
12932375 |
tcaaagtctcaggatgtaaccactgttcta----agcttccatttttcatgtattcaaaaactagtgctttaaattcttgacctttgtaatttgtgctag |
12932280 |
T |
|
| Q |
416 |
aacaacatgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtt |
515 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||| || ||||| || || |
|
|
| T |
12932279 |
aacaacatgttaaaaccttaaccaaatttcggtgtctaatatttttgagtgcgttacattcaacaatgaaactcttgtgagctccctttttttgcagatt |
12932180 |
T |
|
| Q |
516 |
taggaccttcacagcaacaacattaacttccgacac |
551 |
Q |
| |
|
| |||||| || |||||||||||| |||| ||||| |
|
|
| T |
12932179 |
caagacctttactgcaacaacattatcttctgacac |
12932144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 581
Target Start/End: Complemental strand, 12949040 - 12948479
Alignment:
| Q |
16 |
aaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccacc |
115 |
Q |
| |
|
|||||||||||||| |||| || || ||| |||| || |||| || ||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12949040 |
aaacaatggaagattcaagaatgtaaaacgtacccggtggagcataaccaactgttccttttattccaattgtactagtattcttattagaggtactgga |
12948941 |
T |
|
| Q |
116 |
aatggttgagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatc |
215 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| | |
|
|
| T |
12948940 |
aatggttgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatgaaggact |
12948841 |
T |
|
| Q |
216 |
aattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaat |
315 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||||| ||||| | | || || |
|
|
| T |
12948840 |
aattgctcacattatcgatgaagataatgtaatgcagaagcaacatcgataatgatgtttaatctacgacgaaggttcaatgttgttggaggatttgcat |
12948741 |
T |
|
| Q |
316 |
ttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactag |
415 |
Q |
| |
|
| ||| |||||||||| ||||| ||||||| ||||||||||||||||||| | ||| |||||||||||||||||||| ||||||| | ||| |||| |
|
|
| T |
12948740 |
tcaaagtctcaggatgtaaccactgttcta----agcttccatttttcatgtattcaaaaactagagctttaaattcttggcctttgttatttgtgctag |
12948645 |
T |
|
| Q |
416 |
aacaacatgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtt |
515 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||| || || |||||||| |
|
|
| T |
12948644 |
aacaacatgttaaaaccttaaccaaatttcggtgtctaatattttttagtgcattacattcaacaatgaaactcttgtgagctccctttttctggaggtt |
12948545 |
T |
|
| Q |
516 |
taggaccttcacagcaacaacattaacttccgacacaagattcccgctatacacagaaccaaaact |
581 |
Q |
| |
|
| ||| || || |||||||||||| |||| || |||| ||| || || || || ||||||||||| |
|
|
| T |
12948544 |
caagacttttactgcaacaacattatcttctgaaacaatatttcctctgtatacggaaccaaaact |
12948479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 581
Target Start/End: Complemental strand, 12958479 - 12957913
Alignment:
| Q |
11 |
caaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggta |
110 |
Q |
| |
|
|||| |||||||||||||| |||| ||||| |||||||| ||||||| || ||||| |||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
12958479 |
caaaaaaacaatggaagattcaagaatttaaaacatacccggaggagcataaccaactgttccttttattccaattgtgctagtattcttattagaggta |
12958380 |
T |
|
| Q |
111 |
ccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaa |
210 |
Q |
| |
|
|| |||||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
12958379 |
ccggaaatggttgagacaagtcttgctattccaaaatcactcacatgagcaaccatgtcaccatcaagaaggacattgcttggctttagatcacagtgaa |
12958280 |
T |
|
| Q |
211 |
taatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatg-ct |
309 |
Q |
| |
|
|| || |||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| | || |
|
|
| T |
12958279 |
ggattaactgctcacattctcgatgaagataatgtaatgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttggaggact |
12958180 |
T |
|
| Q |
310 |
ctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctg |
409 |
Q |
| |
|
| | ||| ||||| | |||||| ||||| ||||||| |||||||||||| |||||| | ||| ||||||||||||||||||||||||||||| | || |
|
|
| T |
12958179 |
c-gcattcaaaatttgaggatgtaaccactgttcta----agcttccattttccatgtattcaaaaactagagctttaaattcttgacctttgtaatttg |
12958085 |
T |
|
| Q |
410 |
tactagaacaacatgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttg |
509 |
Q |
| |
|
| ||||||||||||||||||||| |||| | |||||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||| || || || |
|
|
| T |
12958084 |
tgctagaacaacatgttaaaaccctaaccaaatttcggtgtctaatatttttgagtgcgttacattcaacaatgaaactcttgtgagctccctttttctg |
12957985 |
T |
|
| Q |
510 |
gaggtttaggaccttcacagcaacaacattaacttccgacacaagattcccgctatacacagaaccaaaact |
581 |
Q |
| |
|
|||||| | ||| || | |||||||||||| |||| || |||| ||| || || || || ||||||||||| |
|
|
| T |
12957984 |
gaggttcaagacttttattgcaacaacattatcttctgaaacaatatttcctctgtatacggaaccaaaact |
12957913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 545
Target Start/End: Complemental strand, 12907591 - 12907061
Alignment:
| Q |
11 |
caaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggta |
110 |
Q |
| |
|
|||| |||||||||||||| ||| ||||| |||||||| || |||| || ||||| |||||||||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
12907591 |
caaaaaaacaatggaagattaaagaatttaaaacatacccggtggagcataaccaactgttccttttattccgattatgctagtattcttatgagaggta |
12907492 |
T |
|
| Q |
111 |
ccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaa |
210 |
Q |
| |
|
||| |||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||| | |
|
|
| T |
12907491 |
ccagaaatggttgagacaagtcttgctatgccaaaatcactcaaatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatgga |
12907392 |
T |
|
| Q |
211 |
taatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctc |
310 |
Q |
| |
|
|| || |||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| ||||||| ||||| | | |
|
|
| T |
12907391 |
ggattaactgctcacattctcgatgaagataatgtaatgcagaagcaacatcgatgatgatgtttaatctaagaccaaggttcaatgttgttggaggatt |
12907292 |
T |
|
| Q |
311 |
tgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgt |
410 |
Q |
| |
|
|| ||| ||| | |||||||| ||||| ||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| | ||| |
|
|
| T |
12907291 |
tgcattcaaagtttcaggatgtaaccactgttcta----agcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgt |
12907196 |
T |
|
| Q |
411 |
actagaacaacatgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttgg |
510 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| ||||||||| ||||||||||| |||||||||||||| ||||| ||| ||| || || ||||| |
|
|
| T |
12907195 |
gctagaacaacatgttaaaaccttaaccaaatttctgtgtctaatatttttgagtgcgttacattcaacaatgaaacttttgtgagcgccctttgtttgg |
12907096 |
T |
|
| Q |
511 |
aggtttaggaccttcacagcaacaacattaacttc |
545 |
Q |
| |
|
||||| | |||||| || |||||||||||| |||| |
|
|
| T |
12907095 |
aggttcaagacctttactgcaacaacattatcttc |
12907061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 245; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 16 - 581
Target Start/End: Original strand, 17923216 - 17923777
Alignment:
| Q |
16 |
aaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccacc |
115 |
Q |
| |
|
|||||| | ||||| |||| ||||| |||||||| | |||| || ||||| |||||||||||||| || |||||||||||||||| ||||||||| |
|
|
| T |
17923216 |
aaacaaagcaagattcaagaatttaaaacatacccgatggagcataaccaactgttccttttattccgatcgtactagtattcttattagaggtaccgga |
17923315 |
T |
|
| Q |
116 |
aatggttgagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatc |
215 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| || |
|
|
| T |
17923316 |
aatggttgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatgaaggatt |
17923415 |
T |
|
| Q |
216 |
aattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaat |
315 |
Q |
| |
|
|| |||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| | | || || |
|
|
| T |
17923416 |
aactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttggaggatttgcat |
17923515 |
T |
|
| Q |
316 |
ttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactag |
415 |
Q |
| |
|
| ||| |||||||||| ||||| ||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| | ||| |||| |
|
|
| T |
17923516 |
tcaaagtctcaggatgtaaccactgttcta----agcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgtgctag |
17923611 |
T |
|
| Q |
416 |
aacaacatgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtt |
515 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||| || || |||||||| |
|
|
| T |
17923612 |
aacaacatgttaaaaccttaaccaaatttcggtgtctaatatttttgagtgcgttacattcaacaacgaaactcttgtgagctccctttttatggaggtt |
17923711 |
T |
|
| Q |
516 |
taggaccttcacagcaacaacattaacttccgacacaagattcccgctatacacagaaccaaaact |
581 |
Q |
| |
|
| ||| || || |||||||||||| |||| || |||| ||| || || || || ||||||||||| |
|
|
| T |
17923712 |
caagactttaactgcaacaacattatcttctgaaacaatatttcctctgtatacggaaccaaaact |
17923777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 7694 - 7272
Alignment:
| Q |
11 |
caaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggta |
110 |
Q |
| |
|
|||| |||||||||||||| |||| ||||| |||||||| || |||| || ||| | |||||||||||||| ||||| ||||||||||||| ||| ||| |
|
|
| T |
7694 |
caaaaaaacaatggaagattcaagaatttaaaacatacccggtggagcataaccagctgttccttttattccgattgtgctagtattcttattagacgta |
7595 |
T |
|
| Q |
111 |
ccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaa |
210 |
Q |
| |
|
||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
7594 |
ccagaaatggttgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttagatcacaatgaa |
7495 |
T |
|
| Q |
211 |
taatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctc |
310 |
Q |
| |
|
|| ||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| | | |
|
|
| T |
7494 |
gtattaattgctcacattctcgatgaagttaatgtaatgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttattggaggatt |
7395 |
T |
|
| Q |
311 |
tgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgt |
410 |
Q |
| |
|
|| ||| ||| |||||||||| ||||| ||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| | ||| |
|
|
| T |
7394 |
tgcattcaaagtctcaggatgtaaccactgttcta----agcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttgtaatttgt |
7299 |
T |
|
| Q |
411 |
actagaacaacatgttaaaaccttaac |
437 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
7298 |
gctagaacaacatgttaaaaccctaac |
7272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 133 - 506
Target Start/End: Original strand, 31467092 - 31467461
Alignment:
| Q |
133 |
ttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||| |||||||||||| | ||||| |||||| || |
|
|
| T |
31467092 |
ttgctatgccaaaatcactcacatgagctaccatagaatcatcaagaagaacgttgctaggctttaaatcacaatgaatgacaggttgctgacattcatg |
31467191 |
T |
|
| Q |
233 |
atgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgc |
332 |
Q |
| |
|
||| |||||||| ||||| |||||||| || ||||| || |||||||| || | || | |||||||||| | ||| | || | | |||||| |
|
|
| T |
31467192 |
atgaagataatgaaatgccgaagcaacgtcaataataatatttaacctttgtgctagattcaatgttttttctggacctgcaatttcttttgctggatgc |
31467291 |
T |
|
| Q |
333 |
aaccattgttctaagctagcttccatttttcatgtaataaaacactagagctttaaattcttgacctttgtagtctgtactagaacaacatgttaaaacc |
432 |
Q |
| |
|
||||| ||||||||| ||| ||||||||||| | || || |||||||||||||||||| ||||| | |||||||| ||||| | |||||||| | |
|
|
| T |
31467292 |
aaccaactttctaagct----tccgtttttcatgtactcgaaaacaagagctttaaattcttgatctttgaaatctgtactggaacagcttgttaaaatc |
31467387 |
T |
|
| Q |
433 |
ttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattctt |
506 |
Q |
| |
|
||||| | |||||||||||||| |||||||||||||| |||||| ||| ||||||||| |||||| ||||| |
|
|
| T |
31467388 |
ttaaccaaatttcggtgtctaatatttttgagtgcattgcattcagcaaggaaactcttgtgagctcctttctt |
31467461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 28605894 - 28605824
Alignment:
| Q |
141 |
ccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
28605894 |
ccaaaatcactcacatgagcaaccatgtcattatgaagaagaatattgcttggctttaaatcacaatgaat |
28605824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 39875824 - 39875899
Alignment:
| Q |
135 |
gctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaa |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| | ||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
39875824 |
gctaagccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggacattgcttggttttaaatcacaatgaa |
39875899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 39883947 - 39884022
Alignment:
| Q |
135 |
gctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaa |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| | ||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
39883947 |
gctaagccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggacattgcttggttttaaatcacaatgaa |
39884022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 39890901 - 39890976
Alignment:
| Q |
135 |
gctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaa |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| | ||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
39890901 |
gctaagccaaaatcactcacatgagcaaccatgtcatcttcaagaaggacattgcttggttttaaatcacaatgaa |
39890976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University