View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6576_high_8 (Length: 250)
Name: NF6576_high_8
Description: NF6576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6576_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 40944013 - 40944232
Alignment:
| Q |
12 |
acagaagaaaatatatggttctgatgcttattctgcttgttttacagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttc |
111 |
Q |
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| T |
40944013 |
acagaagaaaataaatggttctgatgcttattctgcttgtttttcagatttttgaatgctggaatatttggaaaaggaagtgagtcaagccacacacttc |
40944112 |
T |
|
| Q |
112 |
cacacacagcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcacaaatct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40944113 |
cacacacagcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatct |
40944212 |
T |
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| Q |
212 |
ccttaacaacaacgtcactc |
231 |
Q |
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|||||||||||||||||||| |
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| T |
40944213 |
ccttaacaacaacgtcactc |
40944232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 47 - 231
Target Start/End: Original strand, 40958013 - 40958197
Alignment:
| Q |
47 |
cttgttttacagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgaga |
146 |
Q |
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|||||||| ||| ||||||||||| |||||||| ||||| ||||| ||||||| |||||||| |||||||| ||||||||||| ||||||||||||||| |
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| T |
40958013 |
cttgttttccaggtttttgaatgcaggaatattcggaaatggaacagagtcaaatcacacactaccacacacggcaacaagagcagccatgctagtgaga |
40958112 |
T |
|
| Q |
147 |
atcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcacaaatctccttaacaacaacgtcactc |
231 |
Q |
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| T |
40958113 |
atcaacacactcctccaaggctattcaggaattagatttgaaatcttggaagccatcactaagctccttaacaacaacgtcactc |
40958197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 28185358 - 28185195
Alignment:
| Q |
60 |
tttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgagaatcaacacactcc |
159 |
Q |
| |
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||||||||||| ||||||||||| || || || || |||| ||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| || | |
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| T |
28185358 |
tttttgaatgccggaatatttggcaatggtacagaatcaaattgtacactaccacatacagcaacaagagctgcaatgcttgtgaggatcaacactcttc |
28185259 |
T |
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| Q |
160 |
tccaaggttattcaggaatcagatttgaaatcttggaagccatcacaaatctccttaacaacaa |
223 |
Q |
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| T |
28185258 |
ttcaagggtattctggtattagatttgaaatcttggaagctatcacaaagctcttgaacaacaa |
28185195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 42610688 - 42610605
Alignment:
| Q |
116 |
cacagcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagc |
199 |
Q |
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|||||| |||||||| | |||| | || |||||||||||| | || ||||| |||||||||||||||||||||||| ||||||| |
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| T |
42610688 |
cacagccacaagagcaggcatgttggttagaatcaacacattgcttcaaggatattcaggaatcagatttgaaatcatggaagc |
42610605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 208
Target Start/End: Original strand, 40548770 - 40548923
Alignment:
| Q |
55 |
acagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgagaatcaacac |
154 |
Q |
| |
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|||| ||||||||||||||||| ||||| || ||||| || | |||| ||| | ||||| | |||||||||||||| ||| |||| ||||||||||| |
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| T |
40548770 |
acaggtttttgaatgctggaatttttggtaatggaacagaacaatgccatacattgccacaaaatgcaacaagagctgcaatgttagtaagaatcaacac |
40548869 |
T |
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| Q |
155 |
actcctccaaggttattcaggaatcagatttgaaatcttggaagccatcacaaa |
208 |
Q |
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|||||| ||||| || ||||||||||||| |||||| | |||||||| ||||| |
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| T |
40548870 |
actccttcaaggctactcaggaatcagatatgaaatgctagaagccattacaaa |
40548923 |
T |
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