View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6576_high_9 (Length: 249)

Name: NF6576_high_9
Description: NF6576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6576_high_9
NF6576_high_9
[»] chr7 (29 HSPs)
chr7 (1-232)||(25688884-25689114)
chr7 (1-167)||(8929447-8929612)
chr7 (2-229)||(8062819-8063050)
chr7 (1-101)||(18942865-18942965)
chr7 (3-110)||(5197953-5198060)
chr7 (1-157)||(30839846-30840002)
chr7 (3-116)||(27080884-27080997)
chr7 (3-116)||(27197304-27197417)
chr7 (56-143)||(38838646-38838733)
chr7 (3-143)||(1247517-1247655)
chr7 (51-124)||(14669492-14669565)
chr7 (54-159)||(32996500-32996605)
chr7 (59-154)||(25618160-25618255)
chr7 (89-154)||(1052388-1052453)
chr7 (1-34)||(41395631-41395664)
chr7 (3-47)||(26905152-26905196)
chr7 (4-44)||(30601494-30601534)
chr7 (3-42)||(3116924-3116963)
chr7 (89-144)||(5362469-5362524)
chr7 (3-42)||(39608444-39608483)
chr7 (54-152)||(12849716-12849814)
chr7 (5-47)||(29197030-29197072)
chr7 (55-125)||(46720016-46720086)
chr7 (2-47)||(32996365-32996410)
chr7 (2-35)||(39129093-39129126)
chr7 (55-124)||(39608353-39608422)
chr7 (79-123)||(5429520-5429564)
chr7 (89-157)||(18942742-18942810)
chr7 (87-143)||(37502186-37502242)
[»] chr1 (37 HSPs)
chr1 (1-234)||(9890647-9890882)
chr1 (2-235)||(8068875-8069114)
chr1 (2-121)||(31738317-31738435)
chr1 (2-125)||(27463762-27463885)
chr1 (6-143)||(49880067-49880203)
chr1 (3-137)||(40872674-40872805)
chr1 (6-93)||(45919882-45919969)
chr1 (54-137)||(8778977-8779060)
chr1 (55-142)||(51660441-51660528)
chr1 (1-47)||(6541131-6541177)
chr1 (1-47)||(34826995-34827041)
chr1 (87-157)||(36144790-36144860)
chr1 (28-121)||(16658227-16658320)
chr1 (3-47)||(3048070-3048114)
chr1 (55-123)||(32743103-32743171)
chr1 (2-110)||(52361952-52362060)
chr1 (54-145)||(27900636-27900727)
chr1 (54-124)||(14926322-14926392)
chr1 (5-47)||(19464414-19464456)
chr1 (3-45)||(38267346-38267388)
chr1 (54-142)||(34826817-34826904)
chr1 (3-63)||(47921873-47921933)
chr1 (3-47)||(51273374-51273418)
chr1 (55-102)||(5529869-5529916)
chr1 (4-47)||(32743263-32743306)
chr1 (1-47)||(7151940-7151986)
chr1 (2-40)||(8241826-8241864)
chr1 (54-152)||(39330198-39330296)
chr1 (2-47)||(5043428-5043473)
chr1 (89-158)||(10018708-10018776)
chr1 (3-36)||(33747861-33747894)
chr1 (58-143)||(45679523-45679608)
chr1 (53-110)||(45679735-45679792)
chr1 (54-102)||(6541269-6541317)
chr1 (51-143)||(7152057-7152149)
chr1 (83-156)||(19954553-19954622)
chr1 (3-47)||(36144983-36145027)
[»] chr4 (52 HSPs)
chr4 (3-193)||(7616900-7617094)
chr4 (6-143)||(6552424-6552561)
chr4 (2-143)||(45615621-45615762)
chr4 (6-154)||(312587-312735)
chr4 (3-157)||(26499284-26499438)
chr4 (2-143)||(13834455-13834596)
chr4 (2-154)||(51150968-51151119)
chr4 (2-125)||(56095148-56095270)
chr4 (3-157)||(38932640-38932794)
chr4 (3-112)||(48827959-48828068)
chr4 (3-121)||(47097342-47097460)
chr4 (12-141)||(35255419-35255548)
chr4 (2-143)||(32933984-32934118)
chr4 (1-121)||(8755828-8755943)
chr4 (57-145)||(1758467-1758555)
chr4 (2-125)||(40407493-40407616)
chr4 (50-137)||(46216966-46217052)
chr4 (3-49)||(51234394-51234440)
chr4 (3-44)||(971972-972013)
chr4 (55-155)||(32123783-32123882)
chr4 (3-47)||(48973336-48973380)
chr4 (53-112)||(51150890-51150949)
chr4 (1-47)||(11839895-11839941)
chr4 (1-47)||(17381483-17381529)
chr4 (51-125)||(17381545-17381619)
chr4 (2-44)||(36409656-36409698)
chr4 (2-44)||(36423822-36423864)
chr4 (54-144)||(46804773-46804863)
chr4 (54-143)||(13834346-13834435)
chr4 (53-137)||(972104-972188)
chr4 (3-47)||(8170894-8170938)
chr4 (53-113)||(11840031-11840091)
chr4 (54-157)||(12922431-12922534)
chr4 (89-144)||(27395682-27395737)
chr4 (54-157)||(40317762-40317865)
chr4 (54-157)||(40327836-40327939)
chr4 (54-157)||(42375231-42375334)
chr4 (4-42)||(924751-924789)
chr4 (3-41)||(9057383-9057421)
chr4 (54-112)||(24806521-24806579)
chr4 (1-35)||(29223243-29223277)
chr4 (91-141)||(30623744-30623794)
chr4 (7-49)||(31903384-31903426)
chr4 (55-113)||(32934139-32934197)
chr4 (1-47)||(33860292-33860338)
chr4 (2-44)||(51003588-51003630)
chr4 (2-47)||(9297479-9297524)
chr4 (87-124)||(20217484-20217521)
chr4 (2-47)||(24806663-24806708)
chr4 (57-137)||(8170962-8171042)
chr4 (3-47)||(33360943-33360987)
chr4 (86-150)||(41679200-41679263)
[»] chr8 (25 HSPs)
chr8 (6-143)||(36754699-36754836)
chr8 (1-143)||(33590111-33590253)
chr8 (1-128)||(7680862-7680989)
chr8 (2-143)||(1249113-1249255)
chr8 (51-157)||(3714732-3714838)
chr8 (4-154)||(4586758-4586906)
chr8 (66-125)||(6394086-6394145)
chr8 (2-83)||(41303047-41303127)
chr8 (5-46)||(42659934-42659975)
chr8 (49-157)||(6915508-6915615)
chr8 (3-47)||(7604022-7604066)
chr8 (1-49)||(26018685-26018733)
chr8 (3-49)||(21600531-21600577)
chr8 (1-47)||(24018026-24018072)
chr8 (47-144)||(18080438-18080535)
chr8 (70-143)||(41302650-41302723)
chr8 (54-121)||(7603934-7604001)
chr8 (1-44)||(21602112-21602155)
chr8 (51-125)||(15822831-15822905)
chr8 (1-47)||(18080380-18080426)
chr8 (2-47)||(3662444-3662489)
chr8 (2-47)||(16338267-16338312)
chr8 (3-47)||(2987008-2987052)
chr8 (53-113)||(41303148-41303208)
chr8 (3-39)||(42844961-42844997)
[»] chr2 (23 HSPs)
chr2 (2-154)||(7165692-7165844)
chr2 (2-110)||(17742514-17742621)
chr2 (6-143)||(31967500-31967637)
chr2 (3-130)||(41746455-41746582)
chr2 (54-157)||(6788484-6788587)
chr2 (55-141)||(13478769-13478855)
chr2 (89-159)||(14441139-14441209)
chr2 (83-157)||(14524200-14524273)
chr2 (2-121)||(20966057-20966168)
chr2 (2-47)||(6788348-6788393)
chr2 (57-110)||(19206503-19206556)
chr2 (3-47)||(8940070-8940114)
chr2 (51-121)||(7165604-7165675)
chr2 (54-125)||(34883935-34884006)
chr2 (1-47)||(39002945-39002991)
chr2 (64-110)||(42657800-42657846)
chr2 (2-47)||(15816903-15816948)
chr2 (2-47)||(30256234-30256279)
chr2 (3-44)||(40124393-40124434)
chr2 (3-47)||(1901620-1901664)
chr2 (74-154)||(15301604-15301684)
chr2 (3-47)||(19206435-19206479)
chr2 (3-47)||(41450445-41450489)
[»] scaffold0284 (1 HSPs)
scaffold0284 (6-143)||(2499-2636)
[»] scaffold0114 (1 HSPs)
scaffold0114 (6-143)||(34928-35065)
[»] chr3 (26 HSPs)
chr3 (6-143)||(50239776-50239913)
chr3 (11-114)||(43838486-43838589)
chr3 (24-157)||(7672342-7672473)
chr3 (55-145)||(40618890-40618980)
chr3 (1-47)||(14984533-14984579)
chr3 (1-47)||(34979109-34979155)
chr3 (54-152)||(40619188-40619286)
chr3 (56-141)||(21568322-21568407)
chr3 (54-123)||(23195720-23195789)
chr3 (53-157)||(30843801-30843905)
chr3 (54-144)||(1324508-1324598)
chr3 (1-47)||(23195655-23195701)
chr3 (1-47)||(37326760-37326806)
chr3 (1-47)||(46008652-46008698)
chr3 (3-47)||(30843668-30843712)
chr3 (3-47)||(40954485-40954529)
chr3 (64-136)||(45681395-45681467)
chr3 (54-157)||(34294103-34294206)
chr3 (2-41)||(53705891-53705930)
chr3 (53-143)||(43837102-43837192)
chr3 (6-47)||(39336716-39336757)
chr3 (54-114)||(621857-621917)
chr3 (3-47)||(3941674-3941718)
chr3 (54-138)||(12832063-12832147)
chr3 (3-47)||(47199894-47199938)
chr3 (57-157)||(51889762-51889862)
[»] scaffold0211 (1 HSPs)
scaffold0211 (6-143)||(20116-20253)
[»] chr5 (32 HSPs)
chr5 (6-143)||(9023255-9023392)
chr5 (3-137)||(27769899-27770033)
chr5 (2-115)||(11497891-11498004)
chr5 (2-115)||(11505247-11505360)
chr5 (2-115)||(11512641-11512754)
chr5 (2-115)||(11520017-11520130)
chr5 (2-115)||(11527425-11527538)
chr5 (2-115)||(11534831-11534944)
chr5 (54-157)||(6217385-6217488)
chr5 (54-121)||(37853241-37853308)
chr5 (51-124)||(17676566-17676639)
chr5 (28-121)||(28903780-28903873)
chr5 (28-121)||(28940175-28940268)
chr5 (3-47)||(8206226-8206270)
chr5 (54-125)||(22579502-22579573)
chr5 (66-152)||(27001396-27001482)
chr5 (1-42)||(39194927-39194967)
chr5 (89-157)||(26675302-26675370)
chr5 (89-157)||(26946910-26946978)
chr5 (53-133)||(31949277-31949357)
chr5 (54-125)||(27554314-27554385)
chr5 (89-135)||(29686453-29686499)
chr5 (53-143)||(32270643-32270733)
chr5 (2-47)||(917091-917136)
chr5 (190-235)||(9023150-9023195)
chr5 (6-47)||(14460085-14460126)
chr5 (3-47)||(8814181-8814225)
chr5 (53-157)||(14461769-14461873)
chr5 (89-137)||(19342549-19342597)
chr5 (3-47)||(27001245-27001289)
chr5 (3-47)||(29686625-29686669)
chr5 (51-143)||(42420524-42420615)
[»] chr6 (20 HSPs)
chr6 (2-124)||(26293407-26293529)
chr6 (3-143)||(21237176-21237316)
chr6 (1-125)||(17848683-17848807)
chr6 (2-121)||(25084944-25085063)
chr6 (3-143)||(6524863-6524997)
chr6 (4-47)||(16431590-16431633)
chr6 (52-125)||(10067491-10067564)
chr6 (2-47)||(24285103-24285148)
chr6 (2-42)||(10067659-10067699)
chr6 (53-145)||(19264719-19264810)
chr6 (54-110)||(25085083-25085139)
chr6 (54-101)||(10219598-10219645)
chr6 (54-113)||(17848826-17848885)
chr6 (3-49)||(9307395-9307441)
chr6 (55-113)||(22260412-22260470)
chr6 (106-159)||(7514930-7514983)
chr6 (56-113)||(12291631-12291688)
chr6 (3-47)||(28747971-28748015)
chr6 (2-42)||(33806854-33806894)
chr6 (57-113)||(34806657-34806713)
[»] scaffold0687 (2 HSPs)
scaffold0687 (3-47)||(1706-1750)
scaffold0687 (54-121)||(1618-1685)
[»] scaffold0003 (1 HSPs)
scaffold0003 (64-157)||(329044-329138)
[»] scaffold0050 (1 HSPs)
scaffold0050 (53-157)||(81300-81404)
[»] scaffold0086 (2 HSPs)
scaffold0086 (55-125)||(21856-21926)
scaffold0086 (1-42)||(21719-21760)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 25689114 - 25688884
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatt 100  Q
    |||||||||||||||||||  |||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||    
T  25689114 cgttaatattgtcatatta--cattaaatatacttacttattatcatttaagggactattttaactaacaaagtgcaaaatcagaaattattttagaatt 25689017  T
Q  101 ttaatacattgagagattattgtgattattcattacatattcaagaatcaaaatgaccaataatataataa-aagaaatagagaagttggatgtggggct 199  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||    
T  25689016 ttaatacattgagagactattgtgattattcattacacattcaagaatcaaaataaccaataatataataataaaaaatagagaagttggatgtggggct 25688917  T
Q  200 aaagccccacatagtcctatagtagatccgccc 232  Q
      ||||||||||||||||| |||| ||||||||    
T  25688916 ttagccccacatagtcctaaagtatatccgccc 25688884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 8929612 - 8929447
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatt 100  Q
    |||||||||| ||| |||| ||||||| |||||||| ||| |||||||||| |||||||||| ||||||||||||||||||||  || ||||||||||||    
T  8929612 cgttaatattatcaaattagtcattcagtatacttatttactgtcatttaatggactattttgactaacaaagtgcaaaatcaaaaactattttaaaatt 8929513  T
Q  101 ttaatacattgagagattattgtgattattcattacatattcaagaatcaaaatgaccaataatata 167  Q
    |||||||||| | ||| | |||| ||||||| |||||  ||||| ||  |||||||| |||||||||    
T  8929512 ttaatacattaaaagactgttgtaattattc-ttacacgttcaaaaactaaaatgactaataatata 8929447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 8062819 - 8063050
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    |||||||||||||||||| || || |||||||||||| ||||||| || ||||  |||||| |||||  ||||||||||||||  | |||||||||||||    
T  8062819 gttaatattgtcatattagtcttttaatatacttactcattgtcacttcaaggt-tattttgactaa--aagtgcaaaatcagatactattttaaaattt 8062915  T
Q  102 taatacattgagagattattgtgattattcattacatattcaagaatcaaaatgaccaataatataat-------aaaagaaatagagaagttggatgtg 194  Q
    ||||||||||| ||| |||||||| || || ||||| ||||||| | |||||| || | ||  ||| |       |||| |||||| |||||||||||||    
T  8062916 taatacattgacagactattgtgactactcgttacacattcaaggaccaaaataactattaccatatttatgataaaaaaaaatagggaagttggatgtg 8063015  T
Q  195 gggctaaagccccacatagtcctatagtagatccg 229  Q
    |||||  |||||||||||| |||||| | ||||||    
T  8063016 gggctttagccccacatagccctataatggatccg 8063050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 18942865 - 18942965
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| | ||| ||| |||||||||||  | ||||||| ||||    
T  18942865 cgttaatattgtcatattaatcattcaatatacttacttattgtcatttcatggattattttgattaataaaatgcaaaatcagagactattttagaatt 18942964  T
Q  101 t 101  Q
    |    
T  18942965 t 18942965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 5198060 - 5197953
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    ||||||||||||||||| || ||||||||||||| |||||||   || | |||||||||| |||||||||||||||||| || || |||||||||||| |    
T  5198060 ttaatattgtcatattagtctttcaatatacttatttattgttgcttcagggactattttgactaacaaagtgcaaaatgagaaactattttaaaattct 5197961  T
Q  103 aatacatt 110  Q
    ||||||||    
T  5197960 aatacatt 5197953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 30839846 - 30840002
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatt 100  Q
    |||||| |||||||||||| || |||| |||||||| ||||| |||||| |  ||||||||||||||| ||| |  ||||||||| | ||||||||| ||    
T  30839846 cgttaacattgtcatattagtccttcagtatacttatttattatcattttagagactattttaactaataaaatttaaaatcagggactattttaaattt 30839945  T
Q  101 ttaatacattgagagattattgtgattattcattacatattcaagaatcaaaatgac 157  Q
     || |||||||||||| |||||| | ||||| ||| | ||||| | | |||||||||    
T  30839946 atattacattgagagactattgtaactattcgttatacattcagggaccaaaatgac 30840002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 27080884 - 27080997
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    |||||||| ||||||||||| ||||  ||||||||||||| ||| || |||||||||||| | |||||||||| |||||||     ||||||| ||||||    
T  27080884 ttaatattatcatattaatccttcagcatacttacttattatcacttcaaggactattttgaataacaaagtgaaaaatcaaagtctattttagaatttt 27080983  T
Q  103 aatacattgagaga 116  Q
    |||||||| |||||    
T  27080984 aatacatttagaga 27080997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 27197417 - 27197304
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    |||||||| ||||||||||| ||||  ||||||||||||| ||| || |||||||||||| | |||||||||| |||||||     ||||||| ||||||    
T  27197417 ttaatattatcatattaatccttcagcatacttacttattatcacttcaaggactattttgaataacaaagtgaaaaatcaaagtctattttagaatttt 27197318  T
Q  103 aatacattgagaga 116  Q
    |||||||| |||||    
T  27197317 aatacatttagaga 27197304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 38838646 - 38838733
Alignment:
Q  56 ctattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattca 143  Q
    ||||||| ||||||||| |||||||||||  | |||||||||||||||||||||||| ||| |||||||| || || ||||| |||||    
T  38838646 ctattttgactaacaaaatgcaaaatcagagactattttaaaattttaatacattgatagaatattgtgactactcgttacacattca 38838733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 1247655 - 1247517
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    ||||||||||||||||| || || ||||||| ||||  |||||| || | || ||||||| | || ||||| ||||||||| || | |||||||||||||    
T  1247655 ttaatattgtcatattagtcttttaatatacatactagttgtcacttcaggg-ctattttgattagcaaagcgcaaaatcaagact-attttaaaatttt 1247558  T
Q  103 aatacattgagagattattgtgattattcattacatattca 143  Q
    |||||||| ||| | |||||||| || || |||||||||||    
T  1247557 aatacattaagaaactattgtgactactcgttacatattca 1247517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 14669492 - 14669565
Alignment:
Q  51 aaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtg 124  Q
    |||||||| ||| ||||||| |||||| ||||| ||| ||||||| |||||| ||||||||||||| |||||||    
T  14669492 aaggactactttgactaacagagtgcacaatcaagaactattttagaattttgatacattgagagactattgtg 14669565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 32996500 - 32996605
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaa 153  Q
    ||||||||| | |||||||||||| ||||||  | ||||||| |||||| || ||||||| || |||||| | ||||||||| | ||||||| | |||||    
T  32996500 gactattttgattaacaaagtgcacaatcagagactattttagaattttgatgcattgagggactattgtcactattcattagacattcaaggaccaaaa 32996599  T
Q  154 tgacca 159  Q
    ||||||    
T  32996600 tgacca 32996605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 25618160 - 25618255
Alignment:
Q  59 ttttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaat 154  Q
    |||| ||||||||| ||||||||||  || |||||||||||||||||||||||  | | || ||||| || || ||||| ||||||||| ||||||    
T  25618160 ttttgactaacaaaatgcaaaatcataaactattttaaaattttaatacattgcaaaactactgtgactaatcgttacacattcaagaaccaaaat 25618255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 1052453 - 1052388
Alignment:
Q  89 tattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaat 154  Q
    |||||||||||||| ||||||| | | ||||||||| |||||| ||||||||||||  ||||||||    
T  1052453 tattttaaaattttgatacattaaaaaattattgtggttattcgttacatattcaaatatcaaaat 1052388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 41395631 - 41395664
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatact 34  Q
    ||||||||||||||||||||||||||||||||||    
T  41395631 cgttaatattgtcatattaatcattcaatatact 41395664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 26905196 - 26905152
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||| |||||||| || ||||||||||||||||||||||||    
T  26905196 ttaatattatcatattattccttcaatatacttacttattgtcat 26905152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 30601534 - 30601494
Alignment:
Q  4 taatattgtcatattaatcattcaatatacttacttattgt 44  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  30601534 taatattgtcatattaatcgttcgatatacttacttattgt 30601494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 3116924 - 3116963
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttatt 42  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  3116924 ttaatattgtcatattagtctttcaatatacttacttatt 3116963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 5362469 - 5362524
Alignment:
Q  89 tattttaaaattttaatacattgagagattattgtgattattcattacatattcaa 144  Q
    |||||||||||||| |||||||||  ||||||||||| || || ||||||||||||    
T  5362469 tattttaaaattttgatacattgaatgattattgtgactactccttacatattcaa 5362524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 39608444 - 39608483
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttatt 42  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  39608444 ttaatattgtcatattagtcattcagtatacttacttatt 39608483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 12849716 - 12849814
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaa 152  Q
    ||||||||  |||||||||||||| ||||||  | ||||||  |||||| ||||||| | ||| |||||||| || ||||| || ||||||||| ||||    
T  12849716 gactatttcgactaacaaagtgcacaatcagagactattttgtaattttgatacattaaaagactattgtgactactcattgcacattcaagaaccaaa 12849814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 29197030 - 29197072
Alignment:
Q  5 aatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||| | || ||||||||||||||||||||||||    
T  29197030 aatattgtcatatcagtctttcaatatacttacttattgtcat 29197072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 46720016 - 46720086
Alignment:
Q  55 actattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtga 125  Q
    |||||||| |||||||||||||| |||||   |  |||||||||||| ||||||||||| || ||||||||    
T  46720016 actattttgactaacaaagtgcacaatcaaataccattttaaaatttcaatacattgagggactattgtga 46720086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 32996365 - 32996410
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||| || ||||||||||||| ||||| ||||    
T  32996365 gttaatattgtcatattagtccttcaatatacttatttattatcat 32996410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 39129093 - 39129126
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatactt 35  Q
    |||||||||||||||||| |||||||||||||||    
T  39129093 gttaatattgtcatattagtcattcaatatactt 39129126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 39608422 - 39608353
Alignment:
Q  55 actattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtg 124  Q
    ||||||||||||||| |||||||  ||||   |||||||| ||||||  ||||||||||||| |||||||    
T  39608422 actattttaactaacgaagtgcacgatcaatgattattttgaaatttcgatacattgagagactattgtg 39608353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 5429520 - 5429564
Alignment:
Q  79 aatcaggaattattttaaaattttaatacattgagagattattgt 123  Q
    ||||||||| |||||||||||||| ||||||||||  ||||||||    
T  5429520 aatcaggaactattttaaaattttgatacattgaggaattattgt 5429564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 18942810 - 18942742
Alignment:
Q  89 tattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaatgac 157  Q
    |||||||||||||| |||||||||| || |||| ||| ||||| ||||| ||||| | | |||||||||    
T  18942810 tattttaaaattttgatacattgagtgactattatgactattccttacacattcagggaccaaaatgac 18942742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 37502242 - 37502186
Alignment:
Q  87 attattttaaaattttaatacattgagagattattgtgattattcattacatattca 143  Q
    |||||||||||||||| ||| ||| | ||||||||||| |||||| ||||| |||||    
T  37502242 attattttaaaattttgatatattaaaagattattgtggttattcgttacacattca 37502186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 9890647 - 9890882
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatt 100  Q
    ||||||||||||||||||| || |||||||||||    ||||||||||||| |||||||||| |||||||||||||||||||| ||  ||||||| ||||    
T  9890647 cgttaatattgtcatattagtccttcaatatact----tattgtcatttaagggactattttgactaacaaagtgcaaaatcatgatctattttagaatt 9890742  T
Q  101 ttaatacattgagagattattgtgattattcattacatattcaagaatcaaaatgaccaata------atataataaaagaaatagagaagttggatgtg 194  Q
    |||||||||||||||| ||||||||||| || || || ||||| ||| ||||||||| || |       |||||| ||| ||||||||||||||||||||    
T  9890743 ttaatacattgagagactattgtgattaatcgttccacattcaggaaccaaaatgactaacactctacttataattaaaaaaatagagaagttggatgtg 9890842  T
Q  195 gggctaaagccccacatagtcctatagtagatccgcccct 234  Q
    |||||  |||||||||||||| |  |||||||||||||||    
T  9890843 gggctttagccccacatagtcattgagtagatccgcccct 9890882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 8069114 - 8068875
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    |||||||||||||||||||||  |||||||||||||||||| |||||||| | ||| |||| |||||||||||||||||||| ||| ||||||| |||||    
T  8069114 gttaatattgtcatattaatccatcaatatacttacttattatcatttaaggaact-ttttgactaacaaagtgcaaaatcatgaactattttagaattt 8069016  T
Q  102 taatacattgagagattattgtgattattcattacatattcaagaatcaaaatgaccaata--------atataataaaagaaatagagaagttggatgt 193  Q
    ||||||||||| | | |||||||||||||| ||||| ||||| | || ||||| |  ||||        |||  |||||| ||||| |||||||||||||    
T  8069015 taatacattga-aaactattgtgattattcgttacacattcatggattaaaataagtaataccttatttataatataaaaaaaataaagaagttggatgt 8068917  T
Q  194 ggggctaaagccccacatagtcctatagtagatccgcccctg 235  Q
    ||||||  |||||||||||||| |  ||||||||||||||||    
T  8068916 ggggctttagccccacatagtctttgagtagatccgcccctg 8068875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 31738317 - 31738435
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| || | |||||||||| ||||||||||| ||||||||  |||||||||||||||     
T  31738317 gttaatattgtcatattaatcatttaatatacttatttattgtcacttca-ggactattttgactaacaaagtacaaaatcaaaaattattttaaaattc 31738415  T
Q  102 taatacattgagagattatt 121  Q
    ||||||||||||||||||||    
T  31738416 taatacattgagagattatt 31738435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 27463885 - 27463762
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| ||  | ||||||| |||||    
T  27463885 gttaatattgttatattagtctttcaatatacttacttattgtcatttcaaagactattttgactaacaaagtgcaaaattagagactattttagaattt 27463786  T
Q  102 taatacattgagagattattgtga 125  Q
    ||||||||||||||| || |||||    
T  27463785 taatacattgagagaataatgtga 27463762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 49880203 - 49880067
Alignment:
Q  6 atattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaat 105  Q
    |||||||||||||| || ||||||||||||||||||||||| || | |||||||| | ||||||||||| |||||||| | ||||||||| || ||||||    
T  49880203 atattgtcatattagtctttcaatatacttacttattgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaa-tttaat 49880105  T
Q  106 acattgagagattattgtgattattcattacatattca 143  Q
    ||| |||||||||||| ||| |||| ||||||||||||    
T  49880104 acactgagagattattatgactatttattacatattca 49880067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 40872674 - 40872805
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    |||||||||||||||||  | |  |||||||||||||||||||| || |||||||||    ||||||||||| |||||||||| | ||| ||||||||||    
T  40872674 ttaatattgtcatattagccctataatatacttacttattgtcacttcaaggactatg---actaacaaagtacaaaatcagggactatattaaaatttt 40872770  T
Q  103 aatacattgagagattattgtgattattcattaca 137  Q
    |||||||||| ||| |||| ||| |||| ||||||    
T  40872771 aatacattgaaagactattatgactatttattaca 40872805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 45919882 - 45919969
Alignment:
Q  6 atattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattt 93  Q
    ||||||||||||| | | ||||||||||||||||||||||| || | |||||||| | ||||||||||| |||||||| |||||||||    
T  45919882 atattgtcatattgacccttcaatatacttacttattgtcactttagggactattatgactaacaaagtacaaaatcatgaattattt 45919969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 8779060 - 8778977
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattaca 137  Q
    |||||||||||||||||||||||| |||||| || |||||| ||||||| ||| |||||| || ||| |||| |||||||||||    
T  8779060 gactattttaactaacaaagtgcacaatcagaaactattttgaaattttgatatattgagggactatcgtgactattcattaca 8778977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 51660528 - 51660441
Alignment:
Q  55 actattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattc 142  Q
    |||||||| ||||||||| | || ||||||| |||||||| ||||||| ||||| | ||||| |||||| ||||||||||||| ||||    
T  51660528 actattttgactaacaaatttcacaatcagggattattttgaaatttttatacactaagagactattgttattattcattacacattc 51660441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6541131 - 6541177
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||    
T  6541131 cgttaatattgtcatattagtccttcaatatacttacttattgtcat 6541177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34827041 - 34826995
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||    
T  34827041 cgttaatattgtcatattagtcattcaatatacttatttattgtcat 34826995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 36144860 - 36144790
Alignment:
Q  87 attattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaatgac 157  Q
    ||||||||  |||||| |||||||| |||| ||||||||||| |||||||||||||||| | |||||||||    
T  36144860 attattttggaattttgatacattgggagagtattgtgattactcattacatattcaaggaccaaaatgac 36144790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 16658227 - 16658320
Alignment:
Q  28 atatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattatt 121  Q
    ||||||||||||||| ||| || | | |||||| | ||||||||||| |||||||| | | ||||||| |||||||||||||| ||||| ||||    
T  16658227 atatacttacttattatcacttcatgaactattatgactaacaaagtacaaaatcacggactattttagaattttaatacattaagagactatt 16658320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 3048070 - 3048114
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||| |||||||||||||||||||| |||||||||||||||||    
T  3048070 ttaatactgtcatattaatcattcaatttacttacttattgtcat 3048114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 32743171 - 32743103
Alignment:
Q  55 actattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgt 123  Q
    |||||||| |||||| ||| ||| ||||||||| |||||||||||| ||||| ||||| ||||||||||    
T  32743171 actattttgactaaccaagagcacaatcaggaactattttaaaattataataaattgaaagattattgt 32743103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 52362060 - 52361952
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    ||||||||| |||||||| |  ||| ||||||||| ||||| ||| || |  || |||||| | ||| |||||||||||||||  | |||||||||||||    
T  52362060 gttaatattatcatattagttcttcgatatacttatttattatcacttcattgattattttgaataataaagtgcaaaatcagagactattttaaaattt 52361961  T
Q  102 taatacatt 110  Q
    |||||||||    
T  52361960 taatacatt 52361952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 27900727 - 27900636
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaag 145  Q
    ||||||||| ||||  | |||||| ||||||| | |||||||||||||| ||||||| ||||| |||||| | ||||| ||| |||||||||    
T  27900727 gactattttgactattagagtgcacaatcagggactattttaaaattttgatacattaagagactattgtaactattctttatatattcaag 27900636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 14926392 - 14926322
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtg 124  Q
    ||||| ||| ||||||| |||||| |||||| || |||||||||||||| ||||||| ||||| |||||||    
T  14926392 gactactttgactaacatagtgcacaatcagtaactattttaaaattttcatacattcagagactattgtg 14926322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 19464456 - 19464414
Alignment:
Q  5 aatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||||||||||||||||| ||||| ||||    
T  19464456 aatattgtcatattaatcattcaatatacttatttattatcat 19464414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 38267388 - 38267346
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtc 45  Q
    |||||||||||||||||||| ||||||||| ||||||||||||    
T  38267388 ttaatattgtcatattaatccttcaatatatttacttattgtc 38267346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 34826904 - 34826817
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattc 142  Q
    ||||||||| ||||||| | |||| ||||||  || ||||||||||||| |||||||||  || |||||||||||  ||||||||||||    
T  34826904 gactattttgactaacagaatgcacaatcagtgat-attttaaaattttgatacattgaaggactattgtgattaaccattacatattc 34826817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 47921933 - 47921873
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactatttta 63  Q
    ||||| || ||||||||| | ||||||||||||||||||||||| || | |||||||||||    
T  47921933 ttaatcttatcatattaacccttcaatatacttacttattgtcagttcatggactatttta 47921873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 51273418 - 51273374
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||| ||| |||||||| ||||||||||||||    
T  51273418 ttaatattgtcatattagtcactcaatatatttacttattgtcat 51273374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 5529869 - 5529916
Alignment:
Q  55 actattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    |||||||| |||||||||||||| ||| ||| ||||||||||||||||    
T  5529869 actattttgactaacaaagtgcataattagggattattttaaaatttt 5529916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 32743306 - 32743263
Alignment:
Q  4 taatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||| | ||||||||||||||||||||||||||| ||||||    
T  32743306 taatattcttatattaatcattcaatatacttacttactgtcat 32743263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7151940 - 7151986
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||||| || || |||||||||||||||| ||||    
T  7151940 cgttaatattgtcatattagtcttttaatatacttacttattatcat 7151986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 8241826 - 8241864
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttactta 40  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  8241826 gttaatattgtcatattaatcattcaatatgcctactta 8241864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 39330198 - 39330296
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaa 152  Q
    |||||||||||||||| || |||| ||||| | | ||| || || |||| |||||| || | | ||||||||||| |||||||| ||||||| ||||||    
T  39330198 gactattttaactaacgaattgcacaatcatggactatattgaagttttgatacatcgaaaaactattgtgattactcattacacattcaaggatcaaa 39330296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 5043473 - 5043428
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||| |||||  |||||||||||||||| ||||||||||    
T  5043473 gttaatattgttatattggtcattcaatatacttatttattgtcat 5043428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 10018776 - 10018708
Alignment:
Q  89 tattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaatgacc 158  Q
    |||||||||||||| ||||||||| ||| |||||||| || |  ||||||||||| ||| ||||||||||    
T  10018776 tattttaaaattttgatacattgatagactattgtgactactggttacatattcaggaa-caaaatgacc 10018708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 33747894 - 33747861
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatactta 36  Q
    |||||||||||||||||||| |||||||||||||    
T  33747894 ttaatattgtcatattaatccttcaatatactta 33747861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 45679608 - 45679523
Alignment:
Q  58 attttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattca 143  Q
    ||||| ||||| | |||||| |||||  || ||||||||||||||||||| ||||  ||||||||||| || || ||||| |||||    
T  45679608 attttgactaatagagtgcacaatcaaaaactattttaaaattttaatacgttgatggattattgtgactactcgttacacattca 45679523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 45679735 - 45679792
Alignment:
Q  53 ggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacatt 110  Q
    |||||||||| |||||| || |||| ||||| ||| |||||||||||||| |||||||    
T  45679735 ggactattttgactaacgaattgcacaatcatgaactattttaaaatttttatacatt 45679792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 6541269 - 6541317
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    ||||||||| ||| |||||||||| ||||| | ||||||||||||||||    
T  6541269 gactattttgacttacaaagtgcacaatcatggattattttaaaatttt 6541317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 143
Target Start/End: Original strand, 7152057 - 7152149
Alignment:
Q  51 aaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattca 143  Q
    ||||| |||||| | |||| ||||| | |||||  ||||||||| ||||||| ||||||  |||||||||||| |||| || ||||| |||||    
T  7152057 aaggattattttgattaaccaagtgtataatcataaattattttgaaattttgatacatcaagagattattgtaattactcgttacacattca 7152149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 19954622 - 19954553
Alignment:
Q  83 aggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaatga 156  Q
    ||||| |||||||||||||| |||||||||    ||||||||||||||| ||||| ||||| | | ||||||||    
T  19954622 aggaactattttaaaattttgatacattga----ttattgtgattattctttacacattcagggaccaaaatga 19954553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 36145027 - 36144983
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||| |  ||||||||||||| ||||||||||    
T  36145027 ttaatattgtcatattagtttttcaatatacttagttattgtcat 36144983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 7616900 - 7617094
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    |||||||| |||||||| |||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||  || ||||||||||||||    
T  7616900 ttaatattatcatattagtcattcaatatacttatttattgtcatttaatggactattttgactaacaaagtgcaaaatcaaaaactattttaaaatttt 7616999  T
Q  103 aatacattgagagattattgtgattattcattacatattcaagaatcaaaatgaccaataatata---ataa--aagaaatagagaagttggatgt 193  Q
    |||||||| | ||| |||| | ||||||| ||||| |||||| ||  |||||||| |||||| ||   ||||  || |||||||||||||||||||    
T  7617000 aatacattaaaagactattctaattattc-ttacacattcaaaaactaaaatgactaataatctatttataattaataaatagagaagttggatgt 7617094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 6552561 - 6552424
Alignment:
Q  6 atattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaat 105  Q
    ||||||||| |||| || ||||||||||||| ||||||||| || |||| ||||| | ||||||||||| |||||||| | ||||||||| |||||||||    
T  6552561 atattgtcacattagtccttcaatatacttatttattgtcacttcaaggcctattatgactaacaaagtacaaaatcatggattattttagaattttaat 6552462  T
Q  106 acattgagagattattgtgattattcattacatattca 143  Q
    ||| |||||||||||| |||||||| ||||||||||||    
T  6552461 acactgagagattattatgattatttattacatattca 6552424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 45615762 - 45615621
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    |||||||||||||| ||| || ||||||||||||||||||||||| || ||  |||||||| ||||| |||||||||||||||  | |||||||||||||    
T  45615762 gttaatattgtcattttagtccttcaatatacttacttattgtcacttcaaaaactattttgactaataaagtgcaaaatcagagactattttaaaattt 45615663  T
Q  102 taatacattgagagattattgtgattattcattacatattca 143  Q
    ||||||||||| ||| | |||||| |||| |||||| |||||    
T  45615662 taatacattgaaagactgttgtgactattaattacacattca 45615621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 154
Target Start/End: Complemental strand, 312735 - 312587
Alignment:
Q  6 atattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaat 105  Q
    |||||||||||||| || ||||||||||||| ||||||||| || | ||| |||| | ||||| ||||| |||||||| | ||||||||| |||||||||    
T  312735 atattgtcatattagtccttcaatatacttatttattgtcacttcagggattattatgactaataaagtacaaaatcatgtattattttataattttaat 312636  T
Q  106 acattgagagattattgtgattattcattacatattcaagaatcaaaat 154  Q
    ||| |||||||||||| ||| |||| |||||||||||| | ||||||||    
T  312635 acactgagagattattatgactatttattacatattcagggatcaaaat 312587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 157
Target Start/End: Complemental strand, 26499438 - 26499284
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||||| | |  ||||||| |||||||||||  |||||||   ||||||||| ||||||    
T  26499438 ttaatattgtcatattagtcattcaatatacttactaattatcatttcatgagctattttgactaacaaagtataaaatcatttattattttagaatttt 26499339  T
Q  103 aatacattgagagattattgtgattattcattacatattcaagaatcaaaatgac 157  Q
    |||||||| |||||||||||||| || |  ||||| ||||| ||| |||||||||    
T  26499338 aatacattaagagattattgtgactactttttacacattcaggaaccaaaatgac 26499284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 13834455 - 13834596
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    |||||||||||||||||| || ||||||||||||||||||||||| || ||  |||||||| |||||  ||||| ||||||||  | |||||||||||||    
T  13834455 gttaatattgtcatattagtccttcaatatacttacttattgtcactttaaaaactattttgactaatgaagtgtaaaatcagagactattttaaaattt 13834554  T
Q  102 taatacattgagagattattgtgattattcattacatattca 143  Q
    ||||||||| | ||| | |||||| || |||||||| |||||    
T  13834555 taatacattaaaagactgttgtgactactcattacacattca 13834596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 51150968 - 51151119
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    |||||||||||||||||| |  ||||||||||||||||||||||| || | |||||||||| || |||| |||| ||||||||  | |||||||||||||    
T  51150968 gttaatattgtcatattagtacttcaatatacttacttattgtcactt-agggactattttgaccaacagagtg-aaaatcagagactattttaaaattt 51151065  T
Q  102 taatacattgagaga-ttattgtgattattcattacatattcaagaatcaaaat 154  Q
    ||||||||||||||| ||||||||| || || ||||| ||||||| | ||||||    
T  51151066 taatacattgagagatttattgtgactactcgttacacattcaaggaccaaaat 51151119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 56095148 - 56095270
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    |||||||||||||||||| || || |||||||||||||||||||| || |||  ||||||| |||||||||||||||||||||  |  ||||||||||||    
T  56095148 gttaatattgtcatattagtcttttaatatacttacttattgtcacttcaagc-ctattttgactaacaaagtgcaaaatcagagacaattttaaaattt 56095246  T
Q  102 taatacattgagagattattgtga 125  Q
    ||||||| ||||| | ||||||||    
T  56095247 taatacaatgagatactattgtga 56095270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 157
Target Start/End: Complemental strand, 38932794 - 38932640
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    ||||||||||||||||| || ||||||||||||| ||||||||| || |  ||||||| | |||||||| || |||||||| | | ||||||||||||||    
T  38932794 ttaatattgtcatattagtccttcaatatacttatttattgtcacttcagagactattatgactaacaatgtacaaaatcatggactattttaaaatttt 38932695  T
Q  103 aatacattgagagattattgtgattattcattacatattcaagaatcaaaatgac 157  Q
    |||||||||| | | |||| ||| |||| |||||| ||||| ||| | |||||||    
T  38932694 aatacattgaaacactattatgactatttattacacattcacgaaccgaaatgac 38932640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 48828068 - 48827959
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    |||||||||||||||||| | ||||||||||||||||||||||| || | ||||||||   ||||| ||||| |||||||||| | |||||||||||||     
T  48828068 ttaatattgtcatattaacccttcaatatacttacttattgtcacttcagggactattacgactaataaagtacaaaatcagggactattttaaaattta 48827969  T
Q  103 aatacattga 112  Q
    ||||||||||    
T  48827968 aatacattga 48827959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 47097460 - 47097342
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    ||||||||||||||||| || || |||||||||| ||||||||| || |  ||||  | | ||| ||||||| |||||||| ||||||||||||||||||    
T  47097460 ttaatattgtcatattagtcctttaatatacttatttattgtcagtttagagactgctatgacttacaaagtacaaaatcatgaattattttaaaatttt 47097361  T
Q  103 aatacattgagagattatt 121  Q
    |||||||||||||| ||||    
T  47097360 aatacattgagagactatt 47097342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 35255419 - 35255548
Alignment:
Q  12 tcatattaatcattcaatatactt-acttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacatt 110  Q
    |||||||| || || ||||||||| ||||||||||| || | |  ||||||| ||||| |||||||||||||||  | ||||||||||||||||||||||    
T  35255419 tcatattagtcttttaatatactttacttattgtcacttca-gacctattttgactaataaagtgcaaaatcagatactattttaaaattttaatacatt 35255517  T
Q  111 gagagattattgtgattattcattacatatt 141  Q
    |||||| |||||||| || || |||||||||    
T  35255518 gagagactattgtgactactcgttacatatt 35255548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 32934118 - 32933984
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    ||||||||||||| |||| || || ||||||||||||| |||||| || |||| ||||||| ||||| ||||||||||||||      ||||||||||||    
T  32934118 gttaatattgtcacattagtcttttaatatacttacttgttgtcacttcaagg-ctattttgactaataaagtgcaaaatca-----aattttaaaattt 32934025  T
Q  102 taatacattgagagattattgtgattattcattacatattca 143  Q
    ||||| ||||||||| |||| ||| || |||||||| |||||    
T  32934024 taatatattgagaga-tattatgactactcattacacattca 32933984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 8755943 - 8755828
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatt 100  Q
    |||||||||||||||||||||| || ||||||||||    || |||||| ||  |||||||| ||||||||| ||||||||||  || |||||||||| |    
T  8755943 cgttaatattgtcatattaatcctttaatatactta----ttatcatttcaaatactattttgactaacaaaatgcaaaatcaaaaactattttaaaa-t 8755849  T
Q  101 ttaatacattgagagattatt 121  Q
    |||||| ||||||||| ||||    
T  8755848 ttaataaattgagagactatt 8755828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 1758467 - 1758555
Alignment:
Q  57 tattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaag 145  Q
    |||||| ||||| ||| || |||||||| || ||| |||||||||||||||||||||||| ||||||||||| | |||| | |||||||    
T  1758467 tattttgactaataaaatgaaaaatcagaaactatcttaaaattttaatacattgagagactattgtgattacttattaaacattcaag 1758555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 40407616 - 40407493
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaatta-ttttaaaatt 100  Q
    ||||||||| ||||||| ||| || |||||| ||||||||||||| || || ||||||||| |||||||||||| |||||||   | || ||||||||||    
T  40407616 gttaatattatcatattgatcttttaatataattacttattgtcacttcaa-gactattttgactaacaaagtgtaaaatcaaacactatttttaaaatt 40407518  T
Q  101 ttaatacattgagagattattgtga 125  Q
    ||||| |||| ||| ||||| ||||    
T  40407517 ttaattcattaagacattatcgtga 40407493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 46217052 - 46216966
Alignment:
Q  50 aaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattaca 137  Q
    |||||||||||| || || ||||||||| ||||| ||| |||||||||||||| ||||||||||||| |||||| | ||||| |||||    
T  46217052 aaaggactatttgaa-taccaaagtgcacaatcatgaactattttaaaattttgatacattgagagactattgttactattccttaca 46216966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 51234440 - 51234394
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcattt 49  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||    
T  51234440 ttaatattgtcatattaaactttcaatatacttacttattgtcattt 51234394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 971972 - 972013
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgt 44  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  971972 ttaatattgtcatattaatcattcaatatacatacttattgt 972013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 32123882 - 32123783
Alignment:
Q  55 actattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaat 154  Q
    ||||||||||||||| |||| ||||||||   | |||||||||||||||||||||||| |||  |||||| ||| |||||| | ||| ||| ||||||||    
T  32123882 actattttaactaacgaagtacaaaatcaaagactattttaaaattttaatacattga-agacgattgtggttactcattaaacatttaaggatcaaaat 32123784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 48973380 - 48973336
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||| || ||||||||||||||||||||||||    
T  48973380 ttaatattgtcatattagtccttcaatatacttacttattgtcat 48973336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 51150949 - 51150890
Alignment:
Q  53 ggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattga 112  Q
    |||||||||| ||||||||| |||| ||||| ||| |||||||||||||| |||||||||    
T  51150949 ggactattttcactaacaaaatgcacaatcacgaactattttaaaattttgatacattga 51150890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11839895 - 11839941
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||||| || ||||||| ||||||||||||||||    
T  11839895 cgttaatattgtcatattagtccttcaatacacttacttattgtcat 11839941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17381529 - 17381483
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||||    
T  17381529 cgttaatattgtcatattagtccttcaatatacttacttattatcat 17381483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 17381545 - 17381619
Alignment:
Q  51 aaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtga 125  Q
    |||||||||||| | |||||||||||| ||||||| | ||||||  |||||| |||||||||| || ||||||||    
T  17381545 aaggactattttgattaacaaagtgcacaatcagggactattttggaattttgatacattgagggactattgtga 17381619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 36409698 - 36409656
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgt 44  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  36409698 gttaatattgtcatattagtccttcaatatacttacttattgt 36409656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 36423864 - 36423822
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgt 44  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  36423864 gttaatattgtcatattagtccttcaatatacttacttattgt 36423822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 46804863 - 46804773
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaa 144  Q
    ||||||||| |||||||||||| | ||||||  | |||||||||||||| |||||||||| || |||||| | |  || ||||||||||||    
T  46804863 gactattttgactaacaaagtgtacaatcagagactattttaaaattttgatacattgagggactattgtcactgctcgttacatattcaa 46804773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 13834435 - 13834346
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattca 143  Q
    ||||||||| |||||||||||||| ||||| | | |||||||||||||| ||| |||||| || |||| || ||| || ||||| |||||    
T  13834435 gactattttgactaacaaagtgcacaatcaaggactattttaaaattttgataaattgagggactattatggttactccttacacattca 13834346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 972104 - 972188
Alignment:
Q  53 ggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattaca 137  Q
    |||||||||||||||| | |||||| ||||| ||| ||||||| ||||||||||| |||| | | |||| ||| || ||||||||    
T  972104 ggactattttaactaagagagtgcataatcaagaactattttagaattttaatacgttgaaatactattatgactaatcattaca 972188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 8170938 - 8170894
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||    
T  8170938 ttaatattgtcatattagtacttcaatatacttacttattgtcat 8170894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 11840031 - 11840091
Alignment:
Q  53 ggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgag 113  Q
    |||||||||| | |||||||||||| ||||||| | |||||| ||||||| ||||||||||    
T  11840031 ggactattttgattaacaaagtgcacaatcagggactattttgaaattttgatacattgag 11840091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 12922431 - 12922534
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaa 153  Q
    ||||||||  |||||| || |||||||| | ||| |||||||||||||| ||||||| | ||||||| |||  || |||||||| |||||| ||  ||||    
T  12922431 gactatttcgactaacgaaatgcaaaataatgaactattttaaaattttgatacattaaaagattatcgtggctactcattacaaattcaaaaactaaaa 12922530  T
Q  154 tgac 157  Q
    ||||    
T  12922531 tgac 12922534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 27395682 - 27395737
Alignment:
Q  89 tattttaaaattttaatacattgagagattattgtgattattcattacatattcaa 144  Q
    |||||||||||||||||| ||| || ||||||| |||||| |||||||| ||||||    
T  27395682 tattttaaaattttaatatatttagtgattattatgattactcattacacattcaa 27395737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 40317762 - 40317865
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaa 153  Q
    ||||||||| | |||||||||| | ||||| | | |||||||||| ||| |||||||||   | ||||||||  |||||||||| ||||| | |||||||    
T  40317762 gactattttgattaacaaagtgtacaatcaaggactattttaaaaattttatacattgatgaactattgtgacaattcattacacattcatggatcaaaa 40317861  T
Q  154 tgac 157  Q
    ||||    
T  40317862 tgac 40317865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 40327836 - 40327939
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaa 153  Q
    ||||||||| | |||||||||| | ||||| | | |||||||||| ||| |||||||||   | ||||||||  |||||||||| ||||| | |||||||    
T  40327836 gactattttgattaacaaagtgtacaatcaaggactattttaaaaattttatacattgatgaactattgtgacaattcattacacattcatggatcaaaa 40327935  T
Q  154 tgac 157  Q
    ||||    
T  40327936 tgac 40327939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 42375231 - 42375334
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaa 153  Q
    |||||||||||||||| ||||||| |||||  || || ||| ||||||  ||||||| |   |||||||||  || |||||||| |||||| ||||||||    
T  42375231 gactattttaactaacgaagtgcagaatcaaaaactactttgaaatttcgatacattaaagaattattgtggctactcattacacattcaataatcaaaa 42375330  T
Q  154 tgac 157  Q
    ||||    
T  42375331 tgac 42375334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 924789 - 924751
Alignment:
Q  4 taatattgtcatattaatcattcaatatacttacttatt 42  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  924789 taatattgtcatattaataattcaatatatttacttatt 924751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 9057383 - 9057421
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttat 41  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  9057383 ttaatattgtcatattagttattcaatatacttacttat 9057421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 24806579 - 24806521
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattga 112  Q
    |||||||||||||||||||   || ||||||  | ||||||||||||||||||||||||    
T  24806579 gactattttaactaacaaaacacacaatcagatactattttaaaattttaatacattga 24806521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29223243 - 29223277
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatactt 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  29223243 cgttaatattgtcatattagtcattcaatatactt 29223277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 30623744 - 30623794
Alignment:
Q  91 ttttaaaattttaatacattgagagattattgtgattattcattacatatt 141  Q
    |||||||||||| ||||||| | ||||||||||||||| ||||| ||||||    
T  30623744 ttttaaaattttgatacattaaaagattattgtgattactcattgcatatt 30623794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 31903384 - 31903426
Alignment:
Q  7 tattgtcatattaatcattcaatatacttacttattgtcattt 49  Q
    ||||||||||| | || ||||||||||||||||||||||||||    
T  31903384 tattgtcatatcagtccttcaatatacttacttattgtcattt 31903426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 32934139 - 32934197
Alignment:
Q  55 actattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgag 113  Q
    |||||||| |||| ||||||||| |||||  || |||||||||||||| ||||||||||    
T  32934139 actattttgactagcaaagtgcacaatcaaaaactattttaaaattttgatacattgag 32934197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33860292 - 33860338
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||| |||||| || ||||||||||| ||||||||||||    
T  33860292 cgttaatattgtgatattagtctttcaatatactaacttattgtcat 33860338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 51003630 - 51003588
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgt 44  Q
    |||||||||| ||||||||||  ||||||||||||||||||||    
T  51003630 gttaatattggcatattaatctctcaatatacttacttattgt 51003588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 9297479 - 9297524
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||| ||||| |||||||||| ||||| ||||    
T  9297479 gttaatattgtcatattagtcattaaatatacttatttattatcat 9297524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 20217484 - 20217521
Alignment:
Q  87 attattttaaaattttaatacattgagagattattgtg 124  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  20217484 attattttaaaattttgatacattgagagactattgtg 20217521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 24806708 - 24806663
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||| || |  ||||||||||||||||||||||||    
T  24806708 gttaatattgtcatagtagtttttcaatatacttacttattgtcat 24806663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 8170962 - 8171042
Alignment:
Q  57 tattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattaca 137  Q
    |||||| |||||| || |||||||||||  | |||||| ||||||| |||||||||| || |||| ||| || ||||||||    
T  8170962 tattttgactaacgaattgcaaaatcagagactattttgaaatttttatacattgagggactattatgactactcattaca 8171042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 33360943 - 33360987
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||| ||||| ||  |||||||||||||||||    
T  33360943 ttaatattgtcatattagtcatttaacgtacttacttattgtcat 33360987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 41679200 - 41679263
Alignment:
Q  86 aattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatca 150  Q
    ||||||||||||||||| ||| ||||| | |||||||||| || |  ||||||||||||||||||    
T  41679200 aattattttaaaattttgatatattga-aaattattgtgactactagttacatattcaagaatca 41679263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 36754699 - 36754836
Alignment:
Q  6 atattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaat 105  Q
    |||||||||||||| || ||||||||||||| ||||||||| || | |||||||| | ||||||||||| |||||||| ||||||||||| |||||||||    
T  36754699 atattgtcatattagtccttcaatatacttatttattgtcacttcatggactattatgactaacaaagtacaaaatcatgaattattttagaattttaat 36754798  T
Q  106 acattgagagattattgtgattattcattacatattca 143  Q
    ||| |||||||||||| |||||||| ||||||| ||||    
T  36754799 acactgagagattattatgattatttattacatgttca 36754836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 33590253 - 33590111
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatt 100  Q
    |||||||||||||||||  ||  ||||||||| ||| ||||||||| ||||| |||||| || |||||||||||||||||||| ||| ||||||| ||||    
T  33590253 cgttaatattgtcatatcgattcttcaatataattaattattgtcacttaaaagactatattgactaacaaagtgcaaaatcatgaactattttacaatt 33590154  T
Q  101 ttaatacattgagagattattgtgattattcattacatattca 143  Q
    |||||||||||||||| |||||||||||||  || ||||||||    
T  33590153 ttaatacattgagagactattgtgattatttgttgcatattca 33590111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 7680989 - 7680862
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatt 100  Q
    ||||||||||||||| ||| |  |||||||| ||||||||||||||||| |||||||||| | | ||||||||| ||||||||| || |||||| |||||    
T  7680989 cgttaatattgtcatcttagtatttcaatatccttacttattgtcatttcaaggactattatgagtaacaaagtacaaaatcagaaactatttttaaatt 7680890  T
Q  101 ttaatacattgagagattattgtgatta 128  Q
    |||||| ||||||||| |||||||||||    
T  7680889 ttaatatattgagagagtattgtgatta 7680862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 1249255 - 1249113
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtca-tttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatt 100  Q
    ||||||| |||||||| | |  ||||||||| ||||||||||||| ||| |||||||||||| |||||||||| ||||||||| ||| ||||||| ||||    
T  1249255 gttaatactgtcatatcagtacttcaatatatttacttattgtcactttcaaggactattttgactaacaaagagcaaaatcatgaactattttagaatt 1249156  T
Q  101 ttaatacattgagagattattgtgattattcattacatattca 143  Q
    |||||| ||| ||||| |||| ||||||||| |||||||||||    
T  1249155 ttaatagattaagagactattatgattattcgttacatattca 1249113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 3714838 - 3714732
Alignment:
Q  51 aaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatca 150  Q
    |||||||||||| ||||||||| |||||||||||  |||||||| ||||||||||| ||| |  || |||||| | |||| |||||| ||| ||||||||    
T  3714838 aaggactattttgactaacaaaatgcaaaatcagtgattattttgaaattttaatatattaaaggactattgtaactatttattacacatttaagaatca 3714739  T
Q  151 aaatgac 157  Q
    |||||||    
T  3714738 aaatgac 3714732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 4586906 - 4586758
Alignment:
Q  4 taatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatttta 103  Q
    |||||||||||||||| || || | ||||||||||  |||||| || | | |||||||| |||||| |||||||||||||   | |||||||||||||||    
T  4586906 taatattgtcatattagtctttta-tatacttactagttgtcaattca-gaactattttgactaacgaagtgcaaaatcatagactattttaaaatttta 4586809  T
Q  104 atacattgagagattattgtgattattcattacatattcaagaatcaaaat 154  Q
    ||||||| ||||| |||||| | || || ||||| ||||||| ||||||||    
T  4586808 atacattaagagactattgtaactactcgttacacattcaaggatcaaaat 4586758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 6394086 - 6394145
Alignment:
Q  66 taacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtga 125  Q
    |||||||||||| |||  |||| | |||||||||||||||||||||||||||||||||||    
T  6394086 taacaaagtgcacaatttggaactgttttaaaattttaatacattgagagattattgtga 6394145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 41303127 - 41303047
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatca 83  Q
    |||||||||||||||||| || || |||||||||| |||||||||  |  ||| ||||||| ||||||||||||||||||||    
T  41303127 gttaatattgtcatattagtcttttaatatacttaattattgtca-ctccagggctattttgactaacaaagtgcaaaatca 41303047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 42659934 - 42659975
Alignment:
Q  5 aatattgtcatattaatcattcaatatacttacttattgtca 46  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  42659934 aatattgtcatattagtcattcaatatacttacttattgtca 42659975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 6915508 - 6915615
Alignment:
Q  49 taaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaat 148  Q
    ||||| |||||||| | ||||| | |||| |||||  ||||||||||||||||| ||||||| || || ||||||||||| | |||||| ||| ||||||    
T  6915508 taaagaactattttgattaacataatgcacaatcaaaaattattttaaaattttgatacattaag-gactattgtgattacttattacacatttaagaat 6915606  T
Q  149 caaaatgac 157  Q
    |||| ||||    
T  6915607 caaattgac 6915615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 7604022 - 7604066
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||    
T  7604022 ttaatattgtcatattaatctttcaatatatttacttattgtcat 7604066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26018733 - 26018685
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcattt 49  Q
    |||||| ||||| |||||| |||||||||||||||||||||||||||||    
T  26018733 cgttaacattgttatattagtcattcaatatacttacttattgtcattt 26018685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 21600531 - 21600577
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcattt 49  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||    
T  21600531 ttaatattgtcatatttgtccttcaatatacttacttattgtcattt 21600577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24018026 - 24018072
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||||| ||||||||||||| |||| ||||||||    
T  24018026 cgttaatattgtcatattagtcattcaatatacatactaattgtcat 24018072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 18080438 - 18080535
Alignment:
Q  47 tttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaa 144  Q
    |||||||||||||||| | ||||| |||||| |||||  || |||||| ||||||| ||||||| ||||| |||| ||| ||  | ||||||||||||    
T  18080438 tttaaaggactattttcaataacatagtgcacaatcaaaaaatattttgaaattttgatacattaagagactattttgactaccccttacatattcaa 18080535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 41302723 - 41302650
Alignment:
Q  70 aaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattca 143  Q
    ||||||||||||||   | ||||||||||||||||||| |||| ||| ||||||||||| || ||||| |||||    
T  41302723 aaagtgcaaaatcatagactattttaaaattttaatactttgaaagactattgtgattactcgttacacattca 41302650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 7604001 - 7603934
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattatt 121  Q
    ||||||||| || ||| ||||||| |||||  ||||||||||||||||| ||||||||| ||| ||||    
T  7604001 gactattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgatacattgaaagactatt 7603934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21602155 - 21602112
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgt 44  Q
    ||||||||||||||||||| || ||||||||||| |||||||||    
T  21602155 cgttaatattgtcatattagtccttcaatatactaacttattgt 21602112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 15822905 - 15822831
Alignment:
Q  51 aaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtga 125  Q
    |||||||||||| ||||||| | |||||| ||| ||| |||| ||||||||| ||| ||| || |||||||||||    
T  15822905 aaggactattttgactaacatattgcaaactcaagaactattctaaaattttgatatattaagggattattgtga 15822831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18080426 - 18080380
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||||||||  ||||||| |||||||||| ||||    
T  18080426 cgttaatattgtcatattaatccctcaatatgcttacttattatcat 18080380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 3662444 - 3662489
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||| |  || |||||||||||||||||||||    
T  3662444 gttaatattgtcatattagttctttaatatacttacttattgtcat 3662489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 16338312 - 16338267
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||  ||  |||||||||||||||||||||||    
T  16338312 gttaatattgtcatatttgtccatcaatatacttacttattgtcat 16338267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 2987008 - 2987052
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||| | |||||||| || ||||||||||||||||||||||||    
T  2987008 ttaatactatcatattagtctttcaatatacttacttattgtcat 2987052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 41303148 - 41303208
Alignment:
Q  53 ggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgag 113  Q
    |||||||||| |||| ||||||||| |||||   | |||||||||||||| ||||||||||    
T  41303148 ggactattttgactagcaaagtgcataatcaatgactattttaaaattttgatacattgag 41303208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 42844961 - 42844997
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttactt 39  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  42844961 ttaatattgtcatatcaatcattcaatataattactt 42844997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 7165692 - 7165844
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    ||||||||| |||||||| || ||||||||||||||||||||||| || || ||||||||||||||| |||||||||||||||  | |||||||||||||    
T  7165692 gttaatattttcatattagtctttcaatatacttacttattgtcacttcaaagactattttaactaataaagtgcaaaatcagagactattttaaaattt 7165791  T
Q  102 taatacattgagagattattgtgattattcattacatattcaagaatcaaaat 154  Q
    ||||||||||| ||| |||||||| || || ||||| ||| | | ||||||||    
T  7165792 taatacattgaaagactattgtgactactcgttacacatttagggatcaaaat 7165844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 17742621 - 17742514
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    |||||||||||||||||| || || |||||||||||||||||||| || | || |||||||||||||||||||||||||||||  | |||||||||||||    
T  17742621 gttaatattgtcatattagtcttttaatatacttacttattgtcacttcaggg-ctattttaactaacaaagtgcaaaatcagagactattttaaaattt 17742523  T
Q  102 taatacatt 110  Q
    |||||||||    
T  17742522 taatacatt 17742514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 31967500 - 31967637
Alignment:
Q  6 atattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaat 105  Q
    |||||||||||||| || ||||||||||||  ||| ||||| || |  ||||||| | ||||||||||| |||||||| | ||| ||||| |||||||||    
T  31967500 atattgtcatattagtccttcaatatacttttttactgtcacttcagagactattatgactaacaaagtacaaaatcatggattcttttagaattttaat 31967599  T
Q  106 acattgagagattattgtgattattcattacatattca 143  Q
    ||| |||||||||||| ||| |||| ||||||||||||    
T  31967600 acactgagagattattatgactatttattacatattca 31967637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 41746455 - 41746582
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    |||||||||||||||||  | ||||||||||||| ||||||||| || | |||||||| |  |||| ||||| |||||||| ||| ||||||| |||||     
T  41746455 ttaatattgtcatattagcccttcaatatacttatttattgtcacttcagggactattatgtctaaaaaagtacaaaatcatgaactattttagaattta 41746554  T
Q  103 aatacattgagagattattgtgattatt 130  Q
    |||||||||||||| |||| ||| ||||    
T  41746555 aatacattgagagactattatgactatt 41746582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 6788484 - 6788587
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaa 153  Q
    ||||||| | |||||||||||||| |||||| || |||||||||||||| |||||||||  || |||| ||| ||||  ||||| ||| ||| || ||||    
T  6788484 gactattctgactaacaaagtgcacaatcagaaactattttaaaattttgatacattgaatgactattatgactatttgttacacatttaaggatgaaaa 6788583  T
Q  154 tgac 157  Q
    ||||    
T  6788584 tgac 6788587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 13478769 - 13478855
Alignment:
Q  55 actattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatatt 141  Q
    |||||||| ||||| ||| |||| |||||  || |||||||||||||| ||| ||| | |||||||||| | |||||||||||||||    
T  13478769 actattttgactaataaaatgcacaatcaaaaactattttaaaattttgatatattcaaagattattgttactattcattacatatt 13478855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 14441139 - 14441209
Alignment:
Q  89 tattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaatgacca 159  Q
    |||||||||||||  ||||| ||||||||||||||  ||| |||||||| ||||||| || ||||||||||    
T  14441139 tattttaaaatttcgatacaatgagagattattgtatttactcattacacattcaaggatgaaaatgacca 14441209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 14524273 - 14524200
Alignment:
Q  83 aggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaatgac 157  Q
    |||||||||| |||||||||| ||| |||| ||| |||||| | ||||||||||| ||||||| |||||||||||    
T  14524273 aggaattattataaaatttta-tacgttgaaagaatattgtaactattcattacacattcaaggatcaaaatgac 14524200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 20966168 - 20966057
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    |||||||||||||||||| || || ||||||||||||  ||||||         ||||||| ||||||||||||||||||||     |||||||||||||    
T  20966168 gttaatattgtcatattagtcttttaatatacttactagttgtcac--------ctattttgactaacaaagtgcaaaatcataggctattttaaaattt 20966077  T
Q  102 taatacattgagagattatt 121  Q
    ||||| ||||||||| ||||    
T  20966076 taatagattgagagactatt 20966057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 6788348 - 6788393
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||| || |||||||||||||||||||||| ||||    
T  6788348 gttaatattgtcatactagtcattcaatatacttacttattatcat 6788393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 19206503 - 19206556
Alignment:
Q  57 tattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacatt 110  Q
    |||||| |||||||||||||| |||||| || |||||||||||||| |||||||    
T  19206503 tattttgactaacaaagtgcataatcagaaactattttaaaattttgatacatt 19206556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 8940114 - 8940070
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||    
T  8940114 ttaatattgtcatattagtcattcaatatacatacttgttgtcat 8940070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 7165675 - 7165604
Alignment:
Q  51 aaggactattttaactaacaaagtgcaaaatcaggaatta-ttttaaaattttaatacattgagagattatt 121  Q
    |||||||||||| ||||| |||||||| ||||| ||| || |||||||| ||||||||||| ||||| ||||    
T  7165675 aaggactattttgactaataaagtgcacaatcaagaactatttttaaaaatttaatacattaagagactatt 7165604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 34884006 - 34883935
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtga 125  Q
    ||||||||| ||||||| |||||| ||| ||  | |||||||||||||| |||||||||| || ||||||||    
T  34884006 gactattttgactaacagagtgcacaattagagactattttaaaattttgatacattgagggactattgtga 34883935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 39002945 - 39002991
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||| ||| | |||||| |||||||||||||||||||||||||||    
T  39002945 cgttaaaattattatattagtcattcaatatacttacttattgtcat 39002991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 42657846 - 42657800
Alignment:
Q  64 actaacaaagtgcaaaatcaggaattattttaaaattttaatacatt 110  Q
    ||||||| |||||| ||||||  ||||||||||||||||||||||||    
T  42657846 actaacatagtgcataatcagatattattttaaaattttaatacatt 42657800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 15816903 - 15816948
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||| || ||||| ||||||||||||| ||||    
T  15816903 gttaatattgtcatattagtccttcaagatacttacttattttcat 15816948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 30256279 - 30256234
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||| ||| |||||||||||| ||||| ||||    
T  30256279 gttaatattgtcatattagtcactcaatatacttatttattatcat 30256234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 40124393 - 40124434
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgt 44  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  40124393 ttaatattgtcatattagcccttcaatatacttacttattgt 40124434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 1901620 - 1901664
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||    
T  1901620 ttaatattgtcatattaatttttcaatatatttatttattgtcat 1901664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 15301604 - 15301684
Alignment:
Q  74 tgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaat 154  Q
    |||| ||||||  |||||||| ||||||  |||||||||||||  |||||||||| || ||||| ||| ||| ||||||||    
T  15301604 tgcacaatcagagattattttgaaatttcgatacattgagagacgattgtgattagtcgttacacatttaaggatcaaaat 15301684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 19206479 - 19206435
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||| ||||| || ||||||||| ||||||||||||||    
T  19206479 ttaatattgtcttattagtccttcaatatatttacttattgtcat 19206435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 41450489 - 41450445
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||| ||||||||||| ||||||||| ||||||||| ||||    
T  41450489 ttaatattatcatattaatctttcaatatatttacttattatcat 41450445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 2499 - 2636
Alignment:
Q  6 atattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaat 105  Q
    |||||||||||||| || ||||||||||||| ||||||||| || | ||| |||| | ||||||||||| |||||||| | ||||||||| |||||||||    
T  2499 atattgtcatattagtccttcaatatacttatttattgtcacttcagggattattatgactaacaaagtacaaaatcatggattattttagaattttaat 2598  T
Q  106 acattgagagattattgtgattattcattacatattca 143  Q
    ||| |||||||||||| ||| |||| ||||||||||||    
T  2599 acactgagagattattatgaatatttattacatattca 2636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 35065 - 34928
Alignment:
Q  6 atattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaat 105  Q
    |||||||||||||| || ||||||||||||| ||||| ||| || | |||||||| | ||||||||||| |||||||| | ||||||||| |||||||||    
T  35065 atattgtcatattagtccttcaatatacttatttattatcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaattttaat 34966  T
Q  106 acattgagagattattgtgattattcattacatattca 143  Q
    ||| |||||||||||| ||| |||| ||||||||||||    
T  34965 acactgagagattattatgactatttattacatattca 34928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 50239913 - 50239776
Alignment:
Q  6 atattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaat 105  Q
    |||||||||||||| || ||||||||||||| ||||||||| || | |||||||| ||||||||||||| || || || | ||||||||| |||||||||    
T  50239913 atattgtcatattagtccttcaatatacttatttattgtcacttcagggactattataactaacaaagtacataaacatggattattttagaattttaat 50239814  T
Q  106 acattgagagattattgtgattattcattacatattca 143  Q
    ||| |||||||||||| ||| |||| ||||||||||||    
T  50239813 acactgagagattattatgactatttattacatattca 50239776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 43838589 - 43838486
Alignment:
Q  11 gtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacatt 110  Q
    |||||||||  | ||||||||||||||||||||||| || | |||||||| | ||||||||||| ||||||||   | ||||||||||||||||||||||    
T  43838589 gtcatattagcccttcaatatacttacttattgtcacttcatggactattatgactaacaaagtacaaaatcaaagactattttaaaattttaatacatt 43838490  T
Q  111 gaga 114  Q
    ||||    
T  43838489 gaga 43838486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 7672473 - 7672342
Alignment:
Q  24 ttcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgt 123  Q
    ||||||||||| ||||||||||| || | | |||||| | ||||||||||| |||||||| ||||||||||| |||||||||||||| | |||||||| |    
T  7672473 ttcaatatact-acttattgtcacttcatg-actattatgactaacaaagtacaaaatcatgaattattttagaattttaatacattaaaagattattat 7672376  T
Q  124 gattattcattacatattcaagaatcaaaatgac 157  Q
     | |||| |||||| ||||||| | |||||||||    
T  7672375 aactatttattacacattcaaggaccaaaatgac 7672342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 40618980 - 40618890
Alignment:
Q  55 actattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaag 145  Q
    |||||||| ||||||||| |||| ||||| | |||||||||||||||| |||||||   ||| |||||||| || ||||||||||||||||    
T  40618980 actattttgactaacaaattgcacaatcaaggattattttaaaattttcatacatttgaagactattgtgactagtcattacatattcaag 40618890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14984533 - 14984579
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||    
T  14984533 cgttaatattgtcatattaatccttcaatatacttgcttattgtcat 14984579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34979155 - 34979109
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||    
T  34979155 cgttaatattatcatattagtcattcaatatacttacttattgtcat 34979109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 40619188 - 40619286
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaa 152  Q
    ||||||||| | ||||| |||||| ||||||  | |||||||||||||| |||||||||| ||||| | ||| || |||||||| ||||||| ||||||    
T  40619188 gactattttgaataacatagtgcacaatcagagactattttaaaattttgatacattgagggattaatatgactactcattacacattcaaggatcaaa 40619286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 21568407 - 21568322
Alignment:
Q  56 ctattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatatt 141  Q
    ||||||| |||||  || |||| ||||||  |||||||| |||||||  ||||||||||||||||||||| || ||||||||||||    
T  21568407 ctattttgactaatgaattgcacaatcagcgattattttgaaatttttgtacattgagagattattgtgactactcattacatatt 21568322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 23195720 - 23195789
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgt 123  Q
    |||||||| ||||||  || |||| |||||| ||||||||||||||||||||||||||| ||| ||||||    
T  23195720 gactatttgaactaatgaaatgcacaatcagaaattattttaaaattttaatacattgaaagactattgt 23195789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 30843801 - 30843905
Alignment:
Q  53 ggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaa 152  Q
    |||||||||| | |||||||||||| ||||||  | ||||||  |||||| ||||||| ||||| |||||||| || |||||||| ||||| ||| ||||    
T  30843801 ggactattttgattaacaaagtgcacaatcagagactattttggaattttgatacattaagagactattgtgactactcattacacattcaggaaccaaa 30843900  T
Q  153 atgac 157  Q
     ||||    
T  30843901 gtgac 30843905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 1324598 - 1324508
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaa 144  Q
    |||||||||  ||| ||||||||| |||||   | |||||||||||||| |||||| ||  |||||||||||||| |||||||| ||||||    
T  1324598 gactattttgcctatcaaagtgcataatcattgactattttaaaattttgatacatcgaaggattattgtgattactcattacacattcaa 1324508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23195701 - 23195655
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||||    
T  23195701 cgttaatattgtcatattagtctttcaatatacttaattattgtcat 23195655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37326806 - 37326760
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  37326806 cgttaatattgtcatattaatcactcaatatatttacttagtgtcat 37326760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 46008652 - 46008698
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||||||| || |||||||||| ||||||||||    
T  46008652 cgttaatattgtcatattaatcttttaatatacttatttattgtcat 46008698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 30843668 - 30843712
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||| || ||||||||||||| ||||||||||    
T  30843668 ttaatattgtcatattagtctttcaatatacttatttattgtcat 30843712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 40954529 - 40954485
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||    
T  40954529 ttaatattgtcatattagtgtttcaatatacttacttattgtcat 40954485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 45681395 - 45681467
Alignment:
Q  64 actaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattac 136  Q
    |||| ||||||||| ||||| | | ||||||||||||| |||||||| | ||| ||||||||||| |||||||    
T  45681395 actagcaaagtgcataatcaaggactattttaaaatttcaatacatttaaagactattgtgattactcattac 45681467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 34294103 - 34294206
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaa 153  Q
    ||||||||| |||||||||||||| |||||   | |||||||| ||||| ||||| ||||| ||| ||||  ||| || ||||| ||| ||| |||||||    
T  34294103 gactattttgactaacaaagtgcacaatcatatactattttaagattttgatacactgagatattgttgtagttactcgttacacatttaaggatcaaaa 34294202  T
Q  154 tgac 157  Q
    ||||    
T  34294203 tgac 34294206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 53705930 - 53705891
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttat 41  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  53705930 gttaatattgtcatattagttattcaatatacttacttat 53705891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 43837192 - 43837102
Alignment:
Q  53 ggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattca 143  Q
    |||||||||| || ||||  ||||| ||||| | ||| ||||||||||||  |||||| || || |||||||||||||| ||||| |||||    
T  43837192 ggactattttgaccaacatggtgcacaatcatggattgttttaaaattttggtacatttagggactattgtgattattcgttacacattca 43837102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 39336757 - 39336716
Alignment:
Q  6 atattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||| |||||||||| ||||||||||||||||||| ||||    
T  39336757 atattgacatattaatccttcaatatacttacttattatcat 39336716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 621857 - 621917
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgaga 114  Q
    ||||||||| |||||||||||||| | | ||| | |||||| ||||||| |||||||||||    
T  621857 gactattttgactaacaaagtgcacagttagggactattttgaaattttgatacattgaga 621917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 3941674 - 3941718
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||| || |||||||||| |||||||| ||||    
T  3941674 ttaatattgtcatattagtccttcaatatacctacttattatcat 3941718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 12832147 - 12832063
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacat 138  Q
    ||||||||| ||||| | |||||| ||  ||| | |||||||||| ||| ||||||| || || |||||| ||||||||||||||    
T  12832147 gactattttgactaagagagtgcacaactagggactattttaaaactttgatacattaagggactattgtaattattcattacat 12832063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 47199938 - 47199894
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||| |||||| |||||||||||||| ||||||||| ||||    
T  47199938 ttaatattatcatatcaatcattcaatatatttacttattatcat 47199894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 51889862 - 51889762
Alignment:
Q  57 tattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaatga 156  Q
    |||||| |||||||||| ||||||||| | ||  ||||  |||||| ||||||||| ||| |||||||| || || ||||| |||||   ||||||||||    
T  51889862 tattttgactaacaaagcgcaaaatcaaggatagttttggaattttgatacattgaaagactattgtgactactccttacacattcagagatcaaaatga 51889763  T
Q  157 c 157  Q
    |    
T  51889762 c 51889762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 20116 - 20253
Alignment:
Q  6 atattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaat 105  Q
    |||||||||||||| || ||||||||||||| ||||||||| || | |||||||| | ||||||||||| |||||||| | ||||||||| |||||||||    
T  20116 atattgtcatattagtccttcaatatacttatttattgtcacttcagggactattatgactaacaaagtacaaaatcatggattattttagaattttaat 20215  T
Q  106 acattgagagattattgtgattattcattacatattca 143  Q
    ||| ||||| | |||| ||| |||| ||||||||||||    
T  20216 acactgagataatattatgactatttattacatattca 20253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 9023392 - 9023255
Alignment:
Q  6 atattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaat 105  Q
    |||||||||||||| || ||||||||||||| ||||||||| || | |||||||| ||||||||||||| |||||||| | ||||||||| || | ||||    
T  9023392 atattgtcatattagtccttcaatatacttatttattgtcacttcagggactattataactaacaaagtacaaaatcatggattattttagaagtgtaat 9023293  T
Q  106 acattgagagattattgtgattattcattacatattca 143  Q
    ||| || ||||||||| ||| |||| | ||||||||||    
T  9023292 acactgtgagattattatgactatttaatacatattca 9023255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 27769899 - 27770033
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    ||||||||||||||||||   ||||||||||||||||||| ||| || || ||||||| | ||||| ||||| |||||||| | | ||||||| ||||||    
T  27769899 ttaatattgtcatattaactcttcaatatacttacttattttcacttcaaagactattatgactaaaaaagtacaaaatcatggactattttagaatttt 27769998  T
Q  103 aatacattgagagattattgtgattattcattaca 137  Q
    |||||||||| ||| |||| ||| |||| ||||||    
T  27769999 aatacattgaaagactattatgactatttattaca 27770033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 11498004 - 11497891
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    ||||||||||||||||||||| || |||||||||||||||||||| || | ||  | |||  |||||||| ||||||||| ||  ||||||| || | ||    
T  11498004 gttaatattgtcatattaatcttttaatatacttacttattgtcacttcagggggtgtttcgactaacaatgtgcaaaattagagattatttaaagaatt 11497905  T
Q  102 taatacattgagag 115  Q
    ||||||||||||||    
T  11497904 taatacattgagag 11497891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 11505360 - 11505247
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    |||||||||||| |||||||| || |||||||||||||||||||| || | ||  |||||  |||||||| ||||||||| ||  ||||||| || | ||    
T  11505360 gttaatattgtcgtattaatcttttaatatacttacttattgtcacttcagggggtatttcgactaacaatgtgcaaaattagagattatttaaagaatt 11505261  T
Q  102 taatacattgagag 115  Q
    ||||||||||||||    
T  11505260 taatacattgagag 11505247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 11512754 - 11512641
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    |||||||||||| |||||||| || |||||||||||||||||||| || | ||  |||||  |||||||| ||||||||| ||  ||||||| || | ||    
T  11512754 gttaatattgtcgtattaatcttttaatatacttacttattgtcacttcagggggtatttcgactaacaatgtgcaaaattagagattatttaaagaatt 11512655  T
Q  102 taatacattgagag 115  Q
    ||||||||||||||    
T  11512654 taatacattgagag 11512641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 11520130 - 11520017
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    |||||||||||| |||||||| || |||||||||||||||||||| || | ||  |||||  |||||||| ||||||||| ||  ||||||| || | ||    
T  11520130 gttaatattgtcgtattaatcttttaatatacttacttattgtcacttcagggggtatttcgactaacaatgtgcaaaattagagattatttaaagaatt 11520031  T
Q  102 taatacattgagag 115  Q
    ||||||||||||||    
T  11520030 taatacattgagag 11520017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 11527538 - 11527425
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    |||||||||||| |||||||| || |||||||||||||||||||| || | ||  |||||  |||||||| ||||||||| ||  ||||||| || | ||    
T  11527538 gttaatattgtcgtattaatcttttaatatacttacttattgtcacttcagggggtatttcgactaacaatgtgcaaaattagagattatttaaagaatt 11527439  T
Q  102 taatacattgagag 115  Q
    ||||||||||||||    
T  11527438 taatacattgagag 11527425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 11534944 - 11534831
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    ||||||||||||||||||||| || |||||||||||||||||||| || | |   |||||  |||||||| ||||||||| ||  ||||||| || | ||    
T  11534944 gttaatattgtcatattaatcttttaatatacttacttattgtcacttcaggcggtatttcgactaacaatgtgcaaaattagagattatttaaagaatt 11534845  T
Q  102 taatacattgagag 115  Q
    ||||||||||||||    
T  11534844 taatacattgagag 11534831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 6217488 - 6217385
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaa 153  Q
    |||||||||||||| |||| |||| ||||||  |||||||||||||||| ||||||| || || |||||| | || |  |||||||||||| |||||||     
T  6217488 gactattttaactatcaaaatgcacaatcagatattattttaaaattttgatacattaagtgactattgtaactactttttacatattcaaaaatcaaat 6217389  T
Q  154 tgac 157  Q
    ||||    
T  6217388 tgac 6217385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 37853308 - 37853241
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattatt 121  Q
    ||||||||| |||||||||||||| |||||   |||||||||||||||||||  ||||||||||||||    
T  37853308 gactattttgactaacaaagtgcacaatcaaagattattttaaaattttaatgtattgagagattatt 37853241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 17676639 - 17676566
Alignment:
Q  51 aaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtg 124  Q
    |||||||| ||| ||||||| |||||| ||||| ||| ||||||| |||||| ||||||||||||| |||||||    
T  17676639 aaggactactttgactaacagagtgcacaatcaagaactattttagaattttgatacattgagagactattgtg 17676566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 28903780 - 28903873
Alignment:
Q  28 atatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattatt 121  Q
    ||||||||||||||| ||| || | | |||||| | ||||||||||| |||||||| | | ||||||| |||||||||||||| ||||| ||||    
T  28903780 atatacttacttattatcacttcatgaactattatgactaacaaagtacaaaatcacggactattttagaattttaatacattaagagactatt 28903873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 28940175 - 28940268
Alignment:
Q  28 atatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattatt 121  Q
    ||||||||||||||| ||| || | | |||||| | ||||||||||| |||||||| | | ||||||| |||||||||||||| ||||| ||||    
T  28940175 atatacttacttattatcacttcatgaactattatgactaacaaagtacaaaatcacggactattttagaattttaatacattaagagactatt 28940268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 8206270 - 8206226
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||    
T  8206270 ttaatattgtcatattaatccttcaatatacttacttattatcat 8206226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 22579502 - 22579573
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtga 125  Q
    ||||||||| | |||||||||| | ||||||| |||||||||||||||| |||||||||  || ||||||||    
T  22579502 gactattttgattaacaaagtgtataatcagggattattttaaaattttgatacattgatggactattgtga 22579573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 27001396 - 27001482
Alignment:
Q  66 taacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaa 152  Q
    ||||| |||||| ||||||  | |||||||||||||| ||| || |||||| |||||||| || |||||||| ||||||||| ||||    
T  27001396 taacagagtgcacaatcagagactattttaaaattttgatatatcgagagactattgtgactactcattacacattcaagaaccaaa 27001482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39194927 - 39194967
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttatt 42  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  39194927 cgttaatattgtcatattaatcattcaa-atacttacttatt 39194967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 26675302 - 26675370
Alignment:
Q  89 tattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaatgac 157  Q
    ||||||| ||| || ||||||| | ||||||||||||||| |||||||| ||||||||| |||| ||||    
T  26675302 tattttagaatattgatacattaaaagattattgtgattagtcattacacattcaagaaccaaagtgac 26675370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 26946910 - 26946978
Alignment:
Q  89 tattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaaatgac 157  Q
    ||||||| ||| || ||||||| | ||||||||||||||| |||||||| ||||||||| |||| ||||    
T  26946910 tattttagaatattgatacattaaaagattattgtgattagtcattacacattcaagaaccaaagtgac 26946978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 31949277 - 31949357
Alignment:
Q  53 ggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcat 133  Q
    |||||||||| ||||||| |||||| ||||||  | | | |||||||||||||| ||| ||||| ||||||||||| ||||    
T  31949277 ggactattttgactaacatagtgcacaatcagagactctcttaaaattttaatatattaagagactattgtgattactcat 31949357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 27554314 - 27554385
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtga 125  Q
    ||||||||||||||||| |||||| ||| | | ||||||||| |||||| |||||||||  || ||||||||    
T  27554314 gactattttaactaacagagtgcacaattaaggattattttagaattttgatacattgaaggactattgtga 27554385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 29686499 - 29686453
Alignment:
Q  89 tattttaaaattttaatacattgagagattattgtgattattcatta 135  Q
    |||||| |||||||||||||||||| ||||||||||| || ||||||    
T  29686499 tattttgaaattttaatacattgagggattattgtgactactcatta 29686453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 32270643 - 32270733
Alignment:
Q  53 ggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattca 143  Q
    |||||||||| ||||||| |  ||| |||||   |||||||| ||||||  ||||||||||| |||||| |||||| || |||||||||||    
T  32270643 ggactattttgactaacatatcgcacaatcatagattattttgaaatttcgatacattgagaaattattatgattactcgttacatattca 32270733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 917136 - 917091
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||    
T  917136 gttaatattgtcatattagtcattcaatatatttattttttgtcat 917091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 9023195 - 9023150
Alignment:
Q  190 atgtggggctaaagccccacatagtcctatagtagatccgcccctg 235  Q
    |||||||||||||||||||||||| ||||   ||||||||||||||    
T  9023195 atgtggggctaaagccccacatagccctaacatagatccgcccctg 9023150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 14460126 - 14460085
Alignment:
Q  6 atattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||| || ||||||||| ||||||||||||||    
T  14460126 atattgtcatattagtccttcaatatatttacttattgtcat 14460085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 8814225 - 8814181
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||||||| ||   ||||||||||||||||||||||    
T  8814225 ttaatattgtcatattagtctcccaatatacttacttattgtcat 8814181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 14461769 - 14461873
Alignment:
Q  53 ggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaa 152  Q
    |||||||||| |||||| ||||| | ||||||  | ||||||||||||| |||| | ||| |||||||||||   | || ||||||||| | | ||||||    
T  14461769 ggactattttgactaacgaagtgtacaatcagagactattttaaaatttgaatagactgaaagattattgtggccactcgttacatatttagggatcaaa 14461868  T
Q  153 atgac 157  Q
    |||||    
T  14461869 atgac 14461873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 19342549 - 19342597
Alignment:
Q  89 tattttaaaattttaatacattgagagattattgtgattattcattaca 137  Q
    |||||||||||||||||| ||||| ||||||||||| ||| || |||||    
T  19342549 tattttaaaattttaatatattgatagattattgtggttactcgttaca 19342597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 27001245 - 27001289
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||  |  |||||||||||||||||||||||    
T  27001245 ttaatattgtcatattaccccgtcaatatacttacttattgtcat 27001289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 29686669 - 29686625
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    ||||||||||||| |||||| ||||||||| ||||||||| ||||    
T  29686669 ttaatattgtcatgttaatctttcaatataattacttattatcat 29686625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 143
Target Start/End: Original strand, 42420524 - 42420615
Alignment:
Q  51 aaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattca 143  Q
    ||||||||||| | |||||||||| || ||||| ||| |||||||||||||| ||||||| | |||  ||||||| ||| | ||||| |||||    
T  42420524 aaggactatttga-ctaacaaagtacataatcacgaactattttaaaattttgatacatttaaagacaattgtgactatacgttacacattca 42420615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 26293529 - 26293407
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtca-tttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatt 100  Q
    ||||||||| |||||||| ||||||||||||| |||||||||||| |||||| | ||||||| ||||||||||| |||||||| | | ||||||| ||||    
T  26293529 gttaatattatcatattagtcattcaatatacatacttattgtcactttaaatg-ctattttgactaacaaagtacaaaatcatggactattttagaatt 26293431  T
Q  101 ttaatacattgagagattattgtg 124  Q
    |||||| ||| | |||||||||||    
T  26293430 ttaatatattaaaagattattgtg 26293407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 21237316 - 21237176
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    |||| ||||||||||||  | ||||||||||||| ||||||||| |  | |||||||| | ||||| ||||| |||| ||||| | ||||||| ||||||    
T  21237316 ttaacattgtcatattagccgttcaatatacttagttattgtcactccagggactattatgactaataaagtacaaactcagggactattttagaatttt 21237217  T
Q  103 aatacattgagagattattgtgattattcattacatattca 143  Q
    |||||||||||||| |||| ||| || | |||||| |||||    
T  21237216 aatacattgagagactattatgactacttattacacattca 21237176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 17848807 - 17848683
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatt 100  Q
    ||||||||||| ||||||| |||||  |||||||||||||||||||  |   |||||||||| ||||| ||| |||||||| |  || || |||||||||    
T  17848807 cgttaatattgacatattagtcatttgatatacttacttattgtcacatctgggactattttcactaataaaatgcaaaattaaaaactaatttaaaatt 17848708  T
Q  101 ttaatacattgagagattattgtga 125  Q
    |||||||||| ||||| ||| ||||    
T  17848707 ttaatacatttagagactatcgtga 17848683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 25085063 - 25084944
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    |||||||||||||||||| || ||||||||||||||||||| ||| || || || |||||| | ||| ||| |||||||| |   | ||||| |||||||    
T  25085063 gttaatattgtcatattattctttcaatatacttacttattttcacttcaaagattattttgattaataaaatgcaaaattaaagactatttaaaaattt 25084964  T
Q  102 taatacattgagagattatt 121  Q
    ||||||||| ||||| ||||    
T  25084963 taatacattaagagactatt 25084944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 6524997 - 6524863
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcatttaaaggactattttaactaacaaagtgcaaaatcaggaattattttaaaatttt 102  Q
    ||||||||||||||||| || ||||||||| ||||||||| ||| || | | ||||     || |||||||| |||||||||| | ||||||| ||||||    
T  6524997 ttaatattgtcatattagtccttcaatatatttacttattctcactttatg-acta-----acaaacaaagtacaaaatcagggactattttagaatttt 6524904  T
Q  103 aatacattgagagattattgtgattattcattacatattca 143  Q
    |||||||||||||| |||| ||| || | |||||| |||||    
T  6524903 aatacattgagagactattatgactacttattacacattca 6524863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 16431633 - 16431590
Alignment:
Q  4 taatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  16431633 taatattgtcatattagtcattcaatatacttacttattgtcat 16431590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 10067564 - 10067491
Alignment:
Q  52 aggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtga 125  Q
    |||||||||||| |||||||| |||| ||||||| | ||||||| |||||| |||||||||| |||| ||||||    
T  10067564 aggactattttacctaacaaactgcacaatcagggactattttagaattttgatacattgagggattgttgtga 10067491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 24285103 - 24285148
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||    
T  24285103 gttaatattgtcatattaatcatttaatatacttacttattatcat 24285148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 10067699 - 10067659
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttatt 42  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  10067699 gttaatattgtcatattagtcattcaatatacttacttatt 10067659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 19264719 - 19264810
Alignment:
Q  53 ggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaag 145  Q
    |||||||||| ||||||| |||||| ||||||  | |||||||||||||  ||||||| ||||| |||||||| || || ||||| |||||||    
T  19264719 ggactattttgactaacatagtgcataatcagagactattttaaaatttcgatacatt-agagactattgtgactactcgttacacattcaag 19264810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 25085083 - 25085139
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacatt 110  Q
    ||||||||| |||||||||||||| |||||  || |||||||||||||| |||||||    
T  25085083 gactattttgactaacaaagtgcacaatcaaaaagtattttaaaattttgatacatt 25085139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 10219645 - 10219598
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattt 101  Q
    ||||||||| |||||||||||||| ||||||||| |||||| ||||||    
T  10219645 gactattttgactaacaaagtgcacaatcaggaactattttgaaattt 10219598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 17848826 - 17848885
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgag 113  Q
    ||||||||| |||||| || |||| |||| | ||||||||||||||||| ||||||||||    
T  17848826 gactattttgactaacgaaatgcacaatctgaaattattttaaaattttgatacattgag 17848885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 9307441 - 9307395
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcattt 49  Q
    |||| |||||||||||| || ||||||||||||||||||| ||||||    
T  9307441 ttaacattgtcatattagtccttcaatatacttacttattttcattt 9307395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 22260470 - 22260412
Alignment:
Q  55 actattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgag 113  Q
    ||||||||||||| ||||||||| |||||   | |||||||||||||| ||||||||||    
T  22260470 actattttaactagcaaagtgcacaatcaatgactattttaaaattttgatacattgag 22260412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 7514983 - 7514930
Alignment:
Q  106 acattgagagattattgtgattattcattacatattcaagaatcaaaatgacca 159  Q
    ||||||| |||||||||  |||| || ||||||||||||||| |||||||||||    
T  7514983 acattgatagattattgctattactctttacatattcaagaaacaaaatgacca 7514930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 12291631 - 12291688
Alignment:
Q  56 ctattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgag 113  Q
    ||||||||| |||||||||| | |||||   | |||||||||||||||||||||||||    
T  12291631 ctattttaattaacaaagtgtacaatcaaagactattttaaaattttaatacattgag 12291688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 28748015 - 28747971
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||| |||||||||||| ||||||||||||||| ||||| |||||    
T  28748015 ttaacattgtcatattagtcattcaatatacttgcttatagtcat 28747971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 33806894 - 33806854
Alignment:
Q  2 gttaatattgtcatattaatcattcaatatacttacttatt 42  Q
    |||||||||||||||||| || ||||||||||||| |||||    
T  33806894 gttaatattgtcatattagtctttcaatatacttaattatt 33806854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 34806713 - 34806657
Alignment:
Q  57 tattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgag 113  Q
    ||||||||||||||||||||| ||||||    |||||||||||||| ||| ||||||    
T  34806713 tattttaactaacaaagtgcataatcagagtctattttaaaattttgataaattgag 34806657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 1706 - 1750
Alignment:
Q  3 ttaatattgtcatattaatcattcaatatacttacttattgtcat 47  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||    
T  1706 ttaatattgtcatattaatctttcaatatatttacttattgtcat 1750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 1685 - 1618
Alignment:
Q  54 gactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattatt 121  Q
    ||||||||| || ||| ||||||| |||||  ||||||||||||||||| ||||||||| ||| ||||    
T  1685 gactattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgatacattgaaagactatt 1618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 329044 - 329138
Alignment:
Q  64 actaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaaga-atcaaaatgac 157  Q
    |||||||||||| | |||||| || ||||||| |||||| ||||||| || ||||||| | | ||||| ||||| |||||||| |||||||||||    
T  329044 actaacaaagtgtataatcagaaactattttataattttgatacattaagtgattattttaaatattcgttacacattcaagagatcaaaatgac 329138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 81404 - 81300
Alignment:
Q  53 ggactattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtgattattcattacatattcaagaatcaaa 152  Q
    |||||||||| |||||| ||||||| |||||  || |||||| |||||| |||||| | ||| | |||||||  || ||||| || ||||||| ||||||    
T  81404 ggactattttgactaacgaagtgcacaatcataaactattttgaaatttcaatacaatcagatactattgtggctactcattgcacattcaaggatcaaa 81305  T
Q  153 atgac 157  Q
    |||||    
T  81304 atgac 81300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 21856 - 21926
Alignment:
Q  55 actattttaactaacaaagtgcaaaatcaggaattattttaaaattttaatacattgagagattattgtga 125  Q
    |||||||| |||||||||||||| |||||| || ||||||  |||||| ||| ||||| ||| ||||||||    
T  21856 actatttttactaacaaagtgcacaatcagaaaatatttttgaattttgatatattgaaagactattgtga 21926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21719 - 21760
Alignment:
Q  1 cgttaatattgtcatattaatcattcaatatacttacttatt 42  Q
    |||||||||| ||||||||||| ||||||||||||| |||||    
T  21719 cgttaatattttcatattaatccttcaatatacttagttatt 21760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University