View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6576_low_12 (Length: 238)

Name: NF6576_low_12
Description: NF6576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6576_low_12
NF6576_low_12
[»] chr1 (11 HSPs)
chr1 (1-223)||(6512929-6513151)
chr1 (5-214)||(6521489-6521698)
chr1 (14-214)||(6507037-6507237)
chr1 (5-213)||(6517338-6517546)
chr1 (38-195)||(47713341-47713498)
chr1 (38-196)||(47745923-47746081)
chr1 (38-196)||(47760255-47760413)
chr1 (38-195)||(47718135-47718292)
chr1 (14-131)||(6500291-6500408)
chr1 (11-131)||(47777813-47777933)
chr1 (34-189)||(6523520-6523675)
[»] scaffold0341 (2 HSPs)
scaffold0341 (14-214)||(1062-1262)
scaffold0341 (14-214)||(8716-8916)
[»] chr5 (3 HSPs)
chr5 (37-204)||(28831385-28831552)
chr5 (38-126)||(28856659-28856747)
chr5 (38-126)||(28861936-28862024)
[»] chr7 (1 HSPs)
chr7 (128-174)||(704378-704424)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6513151 - 6512929
Alignment:
Q  1 attgcaatacttctgtgatcaaaataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6513151 attgcaatacttctgtgatcaaaataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttcc 6513052  T
Q  101 aacaaagatatcaactacggtttctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6513051 aacaaagatatcaactacggtttctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatg 6512952  T
Q  201 attgtcaaaattgcataaagaat 223  Q
    |||||||||||||||||||||||    
T  6512951 attgtcaaaattgcataaagaat 6512929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 5 - 214
Target Start/End: Original strand, 6521489 - 6521698
Alignment:
Q  5 caatacttctgtgatcaaaataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaaca 104  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| |||| |||||||||||||||| |||||||||||||||||||||    
T  6521489 caatacttctgtgatcaaaataatgatggtggtaactacccaacaaacagcacctaccacacaaaccttaacacccttttatccactctcacttccaaca 6521588  T
Q  105 aagatatcaactacggtttctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattg 204  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  6521589 aagatatcaactacggtttctataattcctcttatggaaacaacactgacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattg 6521688  T
Q  205 tcaaaattgc 214  Q
    ||||||||||    
T  6521689 tcaaaattgc 6521698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 6507237 - 6507037
Alignment:
Q  14 tgtgatcaaaataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatca 113  Q
    |||||||||  |||||||| ||||||||||||||||||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||||||| |    
T  6507237 tgtgatcaaggtaacgatgatggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatatta 6507138  T
Q  114 actacggtttctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattg 213  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  6507137 actacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattg 6507038  T
Q  214 c 214  Q
    |    
T  6507037 c 6507037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 6517546 - 6517338
Alignment:
Q  5 caatacttctgtgatcaaaataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaaca 104  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||    
T  6517546 caatacttctgtgatcaaaataacgatggtggtatctacacaaccaacagcacctaccacacaaaccttaacacccttttatccattctcacttccaaca 6517447  T
Q  105 aagatatcaactacggtttctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattg 204  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||| || ||||||||| | ||||| ||||||||    
T  6517446 aagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattg 6517347  T
Q  205 tcaaaattg 213  Q
    || ||||||    
T  6517346 tcgaaattg 6517338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 195
Target Start/End: Complemental strand, 47713498 - 47713341
Alignment:
Q  38 aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcctctt 137  Q
    ||||||||| |||| ||||||||||| || ||||| ||||||||| |||||| ||||||||||||||   | ||||||||||||||||| |||| |||||    
T  47713498 aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctctt 47713399  T
Q  138 atggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacc 195  Q
    ||||   ||||||||||||||||||||| |||||||| || ||||||||||| |||||    
T  47713398 atggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacc 47713341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 196
Target Start/End: Complemental strand, 47746081 - 47745923
Alignment:
Q  38 aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcctctt 137  Q
    ||||||||| |||| ||||||||||| || ||||| ||||||||| |||||| ||||||||||||||   | ||||||||||||||||| |||| |||||    
T  47746081 aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctctt 47745982  T
Q  138 atggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaaccc 196  Q
    ||||   |||||| || ||||||||||| |||||||| || ||||||||||| ||||||    
T  47745981 atggccaaaacactgataaagtaaacgccattggactctgcagaggagatgttaaaccc 47745923  T

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Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 196
Target Start/End: Complemental strand, 47760413 - 47760255
Alignment:
Q  38 aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcctctt 137  Q
    ||||||||| |||| ||||||||||| || ||||| |||||| || | |||| ||| |||||||||  ||| ||||||||||||||||| |||   ||||    
T  47760413 aactacacagccaatagcacctatcaaaacaacctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctacaatatttctt 47760314  T
Q  138 atggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaaccc 196  Q
    ||||   |||||| |||||||||||||| |||||||| |||||||||||||| ||||||    
T  47760313 atggccaaaacactgacaaagtaaacgccattggactctgtagaggagatgttaaaccc 47760255  T

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Target: chr1; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 195
Target Start/End: Complemental strand, 47718292 - 47718135
Alignment:
Q  38 aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcctctt 137  Q
    ||||||||| |||| ||||||||||| || ||||| | ||||||| | |||| ||| |||||||||| ||| ||||||||||||||||| |||| |||||    
T  47718292 aactacacagccaatagcacctatcaaaacaacctcagcacccttttgtccaatctaacttccaacacagaaatcaactacggtttctacaatttctctt 47718193  T
Q  138 atggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacc 195  Q
    ||||   |||||| ||||||||||||||  |||| || || ||||||||||| |||||    
T  47718192 atggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacc 47718135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 6500408 - 6500291
Alignment:
Q  14 tgtgatcaaaataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatca 113  Q
    ||||||||| | ||| || | |||||||||||||| || ||||||||| |||||||||| ||||| ||| |||| |||||||||||||||| ||| ||||    
T  6500408 tgtgatcaagacaacaatagaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatca 6500309  T
Q  114 actacggtttctataatt 131  Q
    ||||||||||||| ||||    
T  6500308 actacggtttctacaatt 6500291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 47777813 - 47777933
Alignment:
Q  11 ttctgtgatcaaaataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagata 110  Q
    ||||||||||| |  |||||  | |||||||||||||| |||||||||||  | | |||||| ||||| ||| |||||||||||| |||||||| | | |    
T  47777813 ttctgtgatcacagcaacgagagaggtaactacacaacaaacagcacctacgaaacaaacctcaacacacttttatccactctcatttccaacacacaaa 47777912  T
Q  111 tcaactacggtttctataatt 131  Q
    |||| ||||||||||| ||||    
T  47777913 tcaattacggtttctacaatt 47777933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 189
Target Start/End: Original strand, 6523520 - 6523675
Alignment:
Q  34 tggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcc 133  Q
    ||||| ||||||| ||||||| | ||| || | |||||||||  | ||||| |||||||||||||||||||   | ||||||||||||||||| |||| |    
T  6523520 tggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaactacggtttctacaatttc 6523619  T
Q  134 tcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgt 189  Q
    ||  | ||   ||||||  ||||||||||||| ||||| ||||| ||||| |||||    
T  6523620 tcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgt 6523675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 1262 - 1062
Alignment:
Q  14 tgtgatcaaaataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatca 113  Q
    |||||||||  |||||||| ||||||||||||||||||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||||||| |    
T  1262 tgtgatcaaggtaacgatgatggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatatta 1163  T
Q  114 actacggtttctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattg 213  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  1162 actacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattg 1063  T
Q  214 c 214  Q
    |    
T  1062 c 1062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 8916 - 8716
Alignment:
Q  14 tgtgatcaaaataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatca 113  Q
    |||||||||  |||||||| ||||||||||||||||||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||||||| |    
T  8916 tgtgatcaaggtaacgatgatggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatatta 8817  T
Q  114 actacggtttctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattg 213  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  8816 actacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattg 8717  T
Q  214 c 214  Q
    |    
T  8716 c 8716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 204
Target Start/End: Complemental strand, 28831552 - 28831385
Alignment:
Q  37 taactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcctct 136  Q
    |||||||||||  |||||||| |||||  ||||||| ||||| ||| |||| ||||| |||||||||| ||| |||| |||||||||||| || | |||     
T  28831552 taactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctca 28831453  T
Q  137 tatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattg 204  Q
    || || | |  || | |||||||| |||| || ||| | |||||||||||||| || || ||||||||    
T  28831452 tacggcaaaggcaacaacaaagtatacgccataggattatgtagaggagatgttaatccaaatgattg 28831385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 28856747 - 28856659
Alignment:
Q  38 aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttcta 126  Q
    ||||||||||  |||||||| |||||  ||||||| ||||| ||| |||| ||||| |||||||||| ||| |||| ||||||||||||    
T  28856747 aactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttcta 28856659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 28862024 - 28861936
Alignment:
Q  38 aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttcta 126  Q
    ||||||||||  |||||||| |||||  ||||||| ||||| ||| |||| ||||| |||||||||| ||| |||| ||||||||||||    
T  28862024 aactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttcta 28861936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 704378 - 704424
Alignment:
Q  128 aattcctcttatggaataaacaccgacaaagtaaacgctattggact 174  Q
    ||||| |||||||  |||||||| |||||||||||||||||||||||    
T  704378 aattcatcttatgacataaacactgacaaagtaaacgctattggact 704424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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