View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6576_low_2 (Length: 803)
Name: NF6576_low_2
Description: NF6576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6576_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 757; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 21 - 793
Target Start/End: Original strand, 25497837 - 25498609
Alignment:
| Q |
21 |
tccgcaacgccttagcaccaagctcaattccttgaaccaaatttctgattgaatttccaactgccattctcttcccaagaggactaacgccgcgaacacc |
120 |
Q |
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| T |
25497837 |
tccgcaacgccttagcaccaagctcaattccttgaaccaaatttctgattgaatttccaactgccattctcttcccaagaggactaacgccgcgaacacc |
25497936 |
T |
|
| Q |
121 |
ctttcccgtctccaccactcccaccttagcaattagcctatccactccattgatatttccttgttgcttaactccattagaaaatttctcaaaagaagta |
220 |
Q |
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| T |
25497937 |
ctttcctgtctccaccactcccaccttagcaattagcctatccactccattgatatttccttgttgcttaactccattagaaaatttctcaaaagaagta |
25498036 |
T |
|
| Q |
221 |
ggtaaagaatagcaactagtgggtgaagaaggaacaattgcccttgaattcaatgacttcaatcttgttaacttttccttcttcacaaaatcaacaacag |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25498037 |
ggtaaagaatagcaactagtgggtgaagaaggaacaatagcccttgaattcaatgacttcaatcttgttaacttttccttcttcacaaaatcaacaacag |
25498136 |
T |
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| Q |
321 |
aatcttttgctgtctgagatttacatctacctaaaaacattgatttcttatcaacttgttcttgatgattctccaacactttcattggagaggacttgga |
420 |
Q |
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| T |
25498137 |
aatcttttgctgtctgagatttacatctacctaaaaccattgatttcttatcaacttgttcttgatgattctccaacactttcattggagaggacttgga |
25498236 |
T |
|
| Q |
421 |
acaaacaccattcctcttaaccttaacctcagaagcattgctaagaaaaccaagtgagttagttgcaacaatatcttcaggtgttccaacacaagcatgt |
520 |
Q |
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| T |
25498237 |
acaaacaccattcctcttaaccttaacctcagaagcattgctaagaaaaccaagtgagttagttgcaacaatatcttcaggtgttccaacacaagcatgt |
25498336 |
T |
|
| Q |
521 |
cttccaggaacaggcctaacaccacgaagaatcggaacaggcgaagcagcttcgaaccgatcaacaaaaacaaactggcctaactgaatcttgtcactaa |
620 |
Q |
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| T |
25498337 |
cttccaggaacaggcctaacaccacgaagaatcggaacaggcgaagcagcttcgaaccgatcaacaaaaacaaactggcctaactgaatcttgtcactta |
25498436 |
T |
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| Q |
621 |
ggattagatcatcatgttcatcagggagagagacataagtggcatgtgatgaatcagaaaccttaacataaaagccttgatttgtaaacaaatctccacc |
720 |
Q |
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| T |
25498437 |
ggattagatcatcatgttcatcagggagagagacataagtggcatgtgatgaatcagaaaccttaacataaaagccttgatttgtaaacaaatctccacc |
25498536 |
T |
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| Q |
721 |
tgctagtgctggaacaatgctcacaacttgtaacaatgatgatctatgttcaccaccaacttttatgtctgtg |
793 |
Q |
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| T |
25498537 |
tgctagtgctggaacaatgctcacaacttgtaacaatgatgatctatgttcaccaccaacttttatgtctgtg |
25498609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 485 - 777
Target Start/End: Original strand, 42468732 - 42469027
Alignment:
| Q |
485 |
gcaacaatatcttcaggtgttccaacacaagcatgtcttccaggaacaggcctaacaccacgaagaatcggaacaggcgaagcagcttcgaaccgatcaa |
584 |
Q |
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||||||||||| |||||||| |||||||||| |||||| ||||||||||| ||||||| | || | |||||||| |||| |||||| || ||||||| |
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| T |
42468732 |
gcaacaatatcctcaggtgtaccaacacaaggatgtctaccaggaacaggtttaacacccctaattacaggaacaggtgaagaagcttcaaaacgatcaa |
42468831 |
T |
|
| Q |
585 |
caaaaacaaactggcctaactgaatcttgtcactaaggattagatcatcatgttcatcagggagagagacataagtggcatgtgatgaatcagaaacctt |
684 |
Q |
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||||||||||||| || || ||||| || ||||| | || | |||||||||||||||||| | ||| |||||||| ||||| ||||||||||||||||| |
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| T |
42468832 |
caaaaacaaactgacccaattgaattttatcactcaaaatcaaatcatcatgttcatcaggtaaagaaacataagtagcatgagatgaatcagaaacctt |
42468931 |
T |
|
| Q |
685 |
aacataaaagccttgatttgtaaacaaatctccacct---gctagtgctggaacaatgctcacaacttgtaacaatgatgatctatgttcaccacc |
777 |
Q |
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|| |||||| |||||||||| ||| | || |||||| || ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||| |
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| T |
42468932 |
aagataaaaaccttgatttggaaaaagttcgccacctgaagcaagtgctggaacaatgctaacaacttgtaacagtgatgatctgtgttcaccacc |
42469027 |
T |
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