View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6576_low_3 (Length: 681)
Name: NF6576_low_3
Description: NF6576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6576_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 244 - 661
Target Start/End: Original strand, 9814112 - 9814532
Alignment:
| Q |
244 |
tgcaattaccatcacattcacgcgtataagaatgccgtacccagaaaaagagaatgccatcacactagaaaaaagacaaagctacccctccacataacac |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9814112 |
tgcaattaccatcacattcacgcgtataagaatgccgtacccagaaaaagagaatgccatcacactagaaaaaagacaaagctacccctccacataacac |
9814211 |
T |
|
| Q |
344 |
ttgtttagtttgaggatttgtttcaaacaataagcagaaaagggtaatttggtgattccacttttcaccattctcct---tgttgtgtaagttgtccaaa |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| || |||||||||||||||||||| |
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| T |
9814212 |
ttgtttagtttgaggatttgtttcaaacaataagcagaaaagggtaatttggggatttcacttttcaccattcttctcattgttgtgtaagttgtccaaa |
9814311 |
T |
|
| Q |
441 |
acaaaacatgctactgctgtactacattctttgtgccaacaacgttgtattgtctgtattcttcacaaagtaaccatttttcttataaaatatctcattc |
540 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9814312 |
acaaaacatgctactgctgtactacattctttgtgccaacaacgttgtattgtctgtatccttcacaaagtaaccatttttcttataaaatatctcattc |
9814411 |
T |
|
| Q |
541 |
atccttatttctcagtaaaggttgaagctttttcaagaacagagtgatatccatgatgaatgagcaaccattgatggaggtgagggaagatttcattatc |
640 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9814412 |
atccttgtttctcagtaaaggttgaagctttttcaagaacagagtgatatccatgatgaatgagcaaccattgatggaggtgagggaagatttcatgatc |
9814511 |
T |
|
| Q |
641 |
tcaccaactgatcacagtgaa |
661 |
Q |
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|||||||||| |||||||||| |
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| T |
9814512 |
tcaccaactggtcacagtgaa |
9814532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 528 - 661
Target Start/End: Complemental strand, 2319790 - 2319657
Alignment:
| Q |
528 |
aaatatctcattcatccttatttctcagtaaaggttgaagctttttcaagaacagagtgatatccatgatgaatgagcaaccattgatggaggtgaggga |
627 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
2319790 |
aaatatctcattcatccttgtttctcagtaaaggttgaagctttttcaagaacagagtggtatccatgatgaatgagcagccattgatggaggtgaggga |
2319691 |
T |
|
| Q |
628 |
agatttcattatctcaccaactgatcacagtgaa |
661 |
Q |
| |
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||||||||| ||||||||||||| |||||||||| |
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| T |
2319690 |
agatttcatgatctcaccaactggtcacagtgaa |
2319657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 9809673 - 9809822
Alignment:
| Q |
16 |
agataaacgaaatgataataatcattaaaaatttacatatataataaatagagaagtttgagttctcgatcatcacgtcttgcctaataattttaatatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| |
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| T |
9809673 |
agataaacgaaatgataataatcattaaaaatttacatatataa---atagagaagtttgagttctcgatcatcacgtctcgcctagtaattttaacatt |
9809769 |
T |
|
| Q |
116 |
tttgtcgggtaagctatgacttataaactcaattattgtttttctgtgagaac |
168 |
Q |
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|||| | |||| ||||||||||||| ||||||||||||||||| ||||||| |
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| T |
9809770 |
tttgccaaataagttatgacttataaagtcaattattgtttttctatgagaac |
9809822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 548 - 612
Target Start/End: Complemental strand, 26355672 - 26355608
Alignment:
| Q |
548 |
tttctcagtaaaggttgaagctttttcaagaacagagtgatatccatgatgaatgagcaaccatt |
612 |
Q |
| |
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||||| ||||||| || ||||||||| ||||||| || ||| ||||||||||||| |||||||| |
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| T |
26355672 |
tttcttagtaaagattcaagctttttgcagaacagtgtcatagccatgatgaatgaacaaccatt |
26355608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 528 - 661
Target Start/End: Complemental strand, 45887803 - 45887670
Alignment:
| Q |
528 |
aaatatctcattcatccttatttctcagtaaaggttgaagctttttcaagaacagagtgatatccatgatgaatgagcaaccattgatggaggtgaggga |
627 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
45887803 |
aaatatctcattcatccttgtttctcagtaaaggttgaagctttttcaagaacagagtggtatccatgatgaatgagcagccattgatggaggtgaggga |
45887704 |
T |
|
| Q |
628 |
agatttcattatctcaccaactgatcacagtgaa |
661 |
Q |
| |
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||||||||| ||||||||||||| |||||||||| |
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| T |
45887703 |
agatttcatgatctcaccaactggtcacagtgaa |
45887670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 530 - 663
Target Start/End: Complemental strand, 48259768 - 48259635
Alignment:
| Q |
530 |
atatctcattcatccttatttctcagtaaaggttgaagctttttcaagaacagagtgatatccatgatgaatgagcaaccattgatggaggtgagggaag |
629 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
48259768 |
atatctcattcatccttgtttctcagtaaaggttgaagctttttcaagaacagagtgatatccatgatgaatgagcagccattgatgaaggtgagggaag |
48259669 |
T |
|
| Q |
630 |
atttcattatctcaccaactgatcacagtgaaac |
663 |
Q |
| |
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||||||| ||||||||||| | |||||||||||| |
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| T |
48259668 |
atttcatgatctcaccaaccggtcacagtgaaac |
48259635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 528 - 661
Target Start/End: Original strand, 47331473 - 47331607
Alignment:
| Q |
528 |
aaatatctcattcatccttatttctcagtaaaggttgaagctttttcaagaaca-gagtgatatccatgatgaatgagcaaccattgatggaggtgaggg |
626 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
47331473 |
aaatatctcattcatccttgtttctcattaaaggttgaagctttttcaagaacaagagtgatatccatgatgaatgagcagccattgatgaaggtgaggg |
47331572 |
T |
|
| Q |
627 |
aagatttcattatctcaccaactgatcacagtgaa |
661 |
Q |
| |
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|||||||||| ||||||||||||| | |||||||| |
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| T |
47331573 |
aagatttcatgatctcaccaactggtgacagtgaa |
47331607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 614 - 661
Target Start/End: Complemental strand, 55864696 - 55864649
Alignment:
| Q |
614 |
atggaggtgagggaagatttcattatctcaccaactgatcacagtgaa |
661 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
55864696 |
atggaggtgagggaagatttcatgatctcaccaactggtcacagtgaa |
55864649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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