View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6576_low_6 (Length: 402)
Name: NF6576_low_6
Description: NF6576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6576_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 12 - 397
Target Start/End: Original strand, 13737968 - 13738356
Alignment:
| Q |
12 |
atcatcacataatcgtatattaactacgaagtaggtgtatggatgaccttctgggattctcctaaactgttttcagaaaatttcatacattttactatga |
111 |
Q |
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||||| |||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13737968 |
atcataacataatcgtattttaactacgaagtaggtgtacgaatgaccttctgggattctcctaaactgttttcagaaaatttcatacattttactatga |
13738067 |
T |
|
| Q |
112 |
atactcaa--gactaagacaaatacttttcaactcaaagtcatagtatgtcatacacattttcggcatgctcagttcataccgcagaatac-tgtcaagc |
208 |
Q |
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|| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| |||||| | |
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| T |
13738068 |
atgctcaaaagactaagacaaatacttctcaactcaaagtcatagtatatcatacacgttttcggtatgctcagttcataccgcagaatacatgtcaaac |
13738167 |
T |
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| Q |
209 |
tatgcctttctccaattttgcagttcatttttaacaaaagtaagatgcaatcatgcaccacacatatcaccatgcacaataatccaaaaatcatacattt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13738168 |
tatgcctttctccaattttgcagttcatttttaacaaaagtaagatgcaatcatgcaccacacatatcaccatgcacaataatccaaaaatcatacattt |
13738267 |
T |
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| Q |
309 |
ctccactcaaaagaaatattacagagtaagatgcaatcttacaccaaaatcaatgcaaaaataggggatttagaaatttgatgatgtcc |
397 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13738268 |
ctccactcaaaagaaatattacagagtaagatacaatcttacaccaaaatcaatgcaaaaataggggatttagaaatttgatgaggtcc |
13738356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 13764800 - 13765181
Alignment:
| Q |
12 |
atcatcacataatcgtatattaactacgaagtaggtgtatggatgaccttctgggattctcctaaactgttttcagaaaatttcatacattttactatga |
111 |
Q |
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| T |
13764800 |
atcataacataatcgtattttaactacgaagtaggtgtatggatgaccttgtggtattctcctaaactgttttcagaaaatttcatacattttactatga |
13764899 |
T |
|
| Q |
112 |
atactcaa--gactaagacaaatacttttcaactcaaagtcatagtatgtcatacacattttcggcatgctcagttcataccgcagaatac-tgtcaagc |
208 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||| ||||||||| |||||||| |||||||| |
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| T |
13764900 |
atactcaaaagactaagacaaatacttttcaacccaaactcatagtatatcatacacgttttcggcatgctaagttcatactgcagaatatatgtcaagc |
13764999 |
T |
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| Q |
209 |
tatgcctttc-tccaattttgcagttcatttttaacaaaagtaagatgcaatcatgcaccacacatatcaccatgcacaataatccaaaaatcatacatt |
307 |
Q |
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| T |
13765000 |
tatgcctttcatccaattttgcagttcatttttaacaaaagtaagatgcaatcaagcaccacacatatcaccatgcacaataatccaaaaatcatacatt |
13765099 |
T |
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| Q |
308 |
tctccactcaaaagaaatattacagagtaagatgcaatcttacaccaaaatcaatgcaaaaataggggatttagaaatttgat |
390 |
Q |
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| T |
13765100 |
tctccactcaaaaaacatattacagagtaagatgcaatcttacaccaaaatcaaatcaaaaa-aggggatttagaaatttgat |
13765181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 13751407 - 13751780
Alignment:
| Q |
12 |
atcatcacataatcgtatattaactacgaagtaggtgtatggatgaccttctgggattctcctaaactgttttcagaaaatttcatacattttactatga |
111 |
Q |
| |
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||||| ||||||| |||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13751407 |
atcataacataattgtatttaaactacgaagtaggtgtatggatgacctcctgggattctcctaaactgttttcagaaaatttaatacattttactatga |
13751506 |
T |
|
| Q |
112 |
atactc--aagactaagacaaatacttttcaactcaaagtcatagtatgtcatacacattttcggcatgctcagttcataccgcagaatac-tgtcaagc |
208 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||| |||| ||| |
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| T |
13751507 |
atactcaaaagactaagacaagtacttttcaactcaaagtcatagtatatcatacacgttttcggcatgctcagttcataccgcaaaatacatgtccagc |
13751606 |
T |
|
| Q |
209 |
tatgcctttctccaattttgcagttcatttttaacaaaagtaagatgcaatcatgcaccacacatatcaccatgcacaataatccaaaaatcatacattt |
308 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13751607 |
tatgcctttctccaatatcgcagttcatttttaacaaaagtaagatgca-------accacgcatatcaccatgcacaataatccaaaaatcatacattt |
13751699 |
T |
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| Q |
309 |
ctccactcaaaagaaatattacagagtaagatgcaatcttacaccaaaatcaatgcaaaaataggggatttagaaatttgat |
390 |
Q |
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| T |
13751700 |
ctccactcaaaagaaatattacagagtaagatgcaatcttacaccaaaatcaaaacaaaaa-aggggatttagaaatttgat |
13751780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 11614238 - 11614287
Alignment:
| Q |
12 |
atcatcacataatcgtatattaactacgaagtaggtgtatggatgacctt |
61 |
Q |
| |
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||||| |||||||||||| |||| | |||||||||||||||||||||||| |
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| T |
11614238 |
atcataacataatcgtattttaattgcgaagtaggtgtatggatgacctt |
11614287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 12068969 - 12069029
Alignment:
| Q |
221 |
caattttgcagttcatttttaacaaaagtaagatgcaatcatgcaccacacatatcaccat |
281 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||| || ||||||||||||||| |
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| T |
12068969 |
caatgttgcagttcattttcaacaaaagtaagatgcaatcattcatcacacatatcaccat |
12069029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 15996235 - 15996294
Alignment:
| Q |
12 |
atcatcacataatcgtatattaactacgaagtaggtgtatggatgaccttctgggattct |
71 |
Q |
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||||| |||||||||||| |||||| ||||||| |||||||||||||||| || |||||| |
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| T |
15996235 |
atcattacataatcgtattttaactgcgaagtatgtgtatggatgaccttttgagattct |
15996294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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