View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6576_low_8 (Length: 321)

Name: NF6576_low_8
Description: NF6576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6576_low_8
NF6576_low_8
[»] chr6 (2 HSPs)
chr6 (19-237)||(1432466-1432684)
chr6 (30-78)||(21919947-21919995)
[»] chr1 (2 HSPs)
chr1 (30-76)||(28077201-28077247)
chr1 (34-82)||(17420080-17420128)
[»] chr7 (2 HSPs)
chr7 (38-82)||(2012777-2012821)
chr7 (38-77)||(504113-504152)
[»] chr5 (4 HSPs)
chr5 (38-82)||(6725118-6725162)
chr5 (38-75)||(8177401-8177438)
chr5 (38-71)||(9860954-9860987)
chr5 (38-82)||(20982280-20982324)
[»] chr3 (2 HSPs)
chr3 (32-77)||(37308215-37308260)
chr3 (38-79)||(52324025-52324066)
[»] chr2 (2 HSPs)
chr2 (30-67)||(32200249-32200286)
chr2 (30-82)||(31740100-31740152)
[»] chr8 (1 HSPs)
chr8 (36-76)||(5088082-5088121)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 1432466 - 1432684
Alignment:
Q  19 acactatacatttaggccatgtttggataactagcttaattaagtgcttatagcataagtgctttataagttatcctaaagagcttatgaacatgtctat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1432466 acactatacatttaggccatgtttggataactagcttaattaagtgcttatagcataagtgctttataagttatcctaaagagcttatgaacatgtctat 1432565  T
Q  119 aagttgtctcaataacagaatcaaaagccaaatttcactttacagaaacaagcctcaaacataaaagtcaaaactcaaaaccattgataacttcactgtt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1432566 aagttgtctcaataacagaatcaaaagccaaatttcactttacagaaacaagcctcaaacataaaagtcaaaactcaaaaccattgataacttcactgtt 1432665  T
Q  219 atgcaaatttcatttcaat 237  Q
    |||||||||||||||||||    
T  1432666 atgcaaatttcatttcaat 1432684  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 21919947 - 21919995
Alignment:
Q  30 ttaggccatgtttggataactagcttaattaagtgcttatagcataagt 78  Q
    ||||||| |||||||||||  | |||||||||| |||||||||||||||    
T  21919947 ttaggccctgtttggataagaaacttaattaagcgcttatagcataagt 21919995  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 28077247 - 28077201
Alignment:
Q  30 ttaggccatgtttggataactagcttaattaagtgcttatagcataa 76  Q
    ||||||||||||||||||| ||||||||||||| ||||||| |||||    
T  28077247 ttaggccatgtttggataagtagcttaattaagcgcttatatcataa 28077201  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 17420080 - 17420128
Alignment:
Q  34 gccatgtttggataactagcttaattaagtgcttatagcataagtgctt 82  Q
    |||||||||||||||  |||||||||||||| |||||| ||||| ||||    
T  17420080 gccatgtttggataaacagcttaattaagtgattatagtataagcgctt 17420128  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 2012821 - 2012777
Alignment:
Q  38 tgtttggataactagcttaattaagtgcttatagcataagtgctt 82  Q
    |||||||||||  ||||||||||||||||||||||||| ||||||    
T  2012821 tgtttggataaaaagcttaattaagtgcttatagcataggtgctt 2012777  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 504113 - 504152
Alignment:
Q  38 tgtttggataactagcttaattaagtgcttatagcataag 77  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  504113 tgtttggataaatagtttaattaagtgcttatagcataag 504152  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 6725118 - 6725162
Alignment:
Q  38 tgtttggataactagcttaattaagtgcttatagcataagtgctt 82  Q
    ||||||||||| ||  |||||||||||||||||||||||||||||    
T  6725118 tgtttggataaataatttaattaagtgcttatagcataagtgctt 6725162  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 8177438 - 8177401
Alignment:
Q  38 tgtttggataactagcttaattaagtgcttatagcata 75  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  8177438 tgtttgaataaatagcttaattaagtgcttatagcata 8177401  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 9860987 - 9860954
Alignment:
Q  38 tgtttggataactagcttaattaagtgcttatag 71  Q
    ||||||||||||||| ||||||||||||||||||    
T  9860987 tgtttggataactagtttaattaagtgcttatag 9860954  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 20982324 - 20982280
Alignment:
Q  38 tgtttggataactagcttaattaagtgcttatagcataagtgctt 82  Q
    |||||||||||  | ||| ||||||||||||||||||||||||||    
T  20982324 tgtttggataaacaacttcattaagtgcttatagcataagtgctt 20982280  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 37308260 - 37308215
Alignment:
Q  32 aggccatgtttggataactagcttaattaagtgcttatagcataag 77  Q
    ||||| |||||||||||  | |||||||||||||||||||||||||    
T  37308260 aggccctgtttggataaacaacttaattaagtgcttatagcataag 37308215  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 52324066 - 52324025
Alignment:
Q  38 tgtttggataactagcttaattaagtgcttatagcataagtg 79  Q
    |||||| |||| || |||||||||||||||||||||||||||    
T  52324066 tgtttgtataaataacttaattaagtgcttatagcataagtg 52324025  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 32200249 - 32200286
Alignment:
Q  30 ttaggccatgtttggataactagcttaattaagtgctt 67  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  32200249 ttaggtcatgtttggataaccagcttaattaagtgctt 32200286  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 31740152 - 31740100
Alignment:
Q  30 ttaggccatgtttggataactagcttaattaagtgcttatagcataagtgctt 82  Q
    |||||||||||||| |||| |||||||||||||  ||| ||| ||||||||||    
T  31740152 ttaggccatgtttgtataaatagcttaattaagcacttttagtataagtgctt 31740100  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 5088082 - 5088121
Alignment:
Q  36 catgtttggataactagcttaattaagtgcttatagcataa 76  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  5088082 catgtttggataaatagcttaa-taagtgcttatagcataa 5088121  T

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