View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6577_high_11 (Length: 332)
Name: NF6577_high_11
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 34929905 - 34929606
Alignment:
| Q |
16 |
atcataagtagtataataatttaatgccatggggcagggcatgtgaaacacgatgaaatggtatttaannnnnnnnaatatccactataattcagaaata |
115 |
Q |
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| T |
34929905 |
atcataagtagtataataatttaatgccatggggcagggcatgtgaaacacgatgaaatggtatttaattttttttaatatccactataattcagaaata |
34929806 |
T |
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| Q |
116 |
tattctatatatactccattatagatgcttggtggtttcaactttcaagactcgtggagtcatggcctcagcatgtgctagctctttctttcaattcctt |
215 |
Q |
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| T |
34929805 |
tattctatatatactccattatagatgcttggtggtttcaactttcaagactcgtggagtcatggcctcagcatgtgctagctctttctttcaattcctt |
34929706 |
T |
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| Q |
216 |
tctataacccttctactagttacactctcttctatgctatcaacaaccttggcaagtggaatctcaatcaaggaagcaactgtgcaagatctccaacttg |
315 |
Q |
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| T |
34929705 |
tctataacccttctactagttacactctcttctatgctatcaacaaccttggcaagtggaatctcaatcaaggaagcaactgtgcaagatctccaacttg |
34929606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 175 - 315
Target Start/End: Complemental strand, 34933840 - 34933697
Alignment:
| Q |
175 |
tcatggcctcagcatgtgctagctctttctttcaattcctttctataacccttctactagttacactctcttctatgctatcaa---caaccttggcaag |
271 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||| | | |||| |||||||||||| ||||||||||||||| |||||||||| || |
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| T |
34933840 |
tcatggactcagcatgtgctagctctttctttcaattcctctctatgatcgttcttctagttacactcccttctatgctatcaacaacaaccttggctag |
34933741 |
T |
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| Q |
272 |
tggaatctcaatcaaggaagcaactgtgcaagatctccaacttg |
315 |
Q |
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| T |
34933740 |
tggattctcaatcaaggaagcaactgtgcaagatctccagcttg |
34933697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 34913347 - 34913284
Alignment:
| Q |
250 |
tgctatcaacaaccttggcaagtggaatctcaatcaaggaagcaactgtgcaagatctccaact |
313 |
Q |
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||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||| |
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| T |
34913347 |
tgctaccaacaaccttggccagtgaattctcaatcaaggaagcaactgtgcaagatcttcaact |
34913284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 34899481 - 34899445
Alignment:
| Q |
277 |
tctcaatcaaggaagcaactgtgcaagatctccaact |
313 |
Q |
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| T |
34899481 |
tctcagtcaaggaagcaaccgtgcaagatctccaact |
34899445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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