View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6577_high_13 (Length: 327)
Name: NF6577_high_13
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_high_13 |
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| [»] scaffold0368 (1 HSPs) |
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Alignment Details
Target: scaffold0368 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 13348 - 13121
Alignment:
| Q |
1 |
tttccggcgagatgtgagaagaataaccctgtgtgttgtgttaggtcctcgttatgaatgtcgagactcagagctatggatctgccgccgagttcagcgc |
100 |
Q |
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| T |
13348 |
tttccggtgagatgtgagaagaataaccctgcgtgttgtgttaggtcctcgttatgaatgtcgagactcagagccatggatctgccgccgagttcagcgc |
13249 |
T |
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| Q |
101 |
cgctggagttgaaaagggaagaagcataagagtaagattaattttttgtcgacgagggataaatcagaggagtaaatggtggcgggtttccagtgaggag |
200 |
Q |
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| T |
13248 |
cgctggagttgaaaagggaagaagcataagagtaagattaactttctgtcggcgagggataaatcagaggagtaaatggtggcgggtttccagtgaggag |
13149 |
T |
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| Q |
201 |
atgatccataagggaggggatgaggaag |
228 |
Q |
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| T |
13148 |
atgatccataagggaggggatgaggaag |
13121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 42837459 - 42837686
Alignment:
| Q |
1 |
tttccggcgagatgtgagaagaataaccctgtgtgttgtgttaggtcctcgttatgaatgtcgagactcagagctatggatctgccgccgagttcagcgc |
100 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42837459 |
tttccggtgagatgtgagaagaataaccctgcgtgttgtgttaggtcctcgttatgaatgtcgagactcagagccatggatctgccgccgagttcagcgc |
42837558 |
T |
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| Q |
101 |
cgctggagttgaaaagggaagaagcataagagtaagattaattttttgtcgacgagggataaatcagaggagtaaatggtggcgggtttccagtgaggag |
200 |
Q |
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| T |
42837559 |
cgctggagttgaaaagggaagaagcataagagtaagattaactttctgtcggcgagggataaatcagaggagtaaatggtggcgggtttccagtgaggag |
42837658 |
T |
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| Q |
201 |
atgatccataagggaggggatgaggaag |
228 |
Q |
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| T |
42837659 |
atgatccataagggaggggatgaggaag |
42837686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 12347030 - 12346970
Alignment:
| Q |
153 |
cgagggataaatcagaggagtaaatggtggcgggtttccagtgaggagatgatccataagg |
213 |
Q |
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|||||| |||||| ||||||||||||||| | | || |||||||||||||||||| |||| |
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| T |
12347030 |
cgaggggtaaatccgaggagtaaatggtgtcagactttcagtgaggagatgatccagaagg |
12346970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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