View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6577_high_17 (Length: 289)
Name: NF6577_high_17
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 52 - 283
Target Start/End: Original strand, 25888470 - 25888701
Alignment:
| Q |
52 |
aaaatccaaacatgggttaaatgatttgcatgaaactattttaaccaacaacattttctcaaacataggttaaaagagttactaaccttactgattcggt |
151 |
Q |
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| T |
25888470 |
aaaatccaaacatgggttaaatgatttgcatgaaactattttaaccaacaacattttgtcaaacatgggttaaaagagttactaaccttactgattcggt |
25888569 |
T |
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| Q |
152 |
accaaagtttgggatcaaaagaagctgctatgagaataatttgagggaaactagttgcagctgtaatactaccattcaatcttatccccttaccaacata |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25888570 |
accaaagtttgggatcaaaagaagctgctatgagaataatttgagggaaactagttgcagctgtaatactaccattcaatcttatccccttaccaacata |
25888669 |
T |
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| Q |
252 |
agaaacaccatgcaaagcttcattccaccatt |
283 |
Q |
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| T |
25888670 |
agaaacaccatgcaaagcttcattccaccatt |
25888701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 121 - 283
Target Start/End: Original strand, 25912563 - 25912725
Alignment:
| Q |
121 |
ttaaaagagttactaaccttactgattcggtaccaaagtttgggatcaaaagaagctgctatgagaataatttgagggaaactagttgcagctgtaatac |
220 |
Q |
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||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| || | ||||||| ||||||||||||||||||||||| ||||| |
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| T |
25912563 |
ttaaacgagttactcaccttactgatttggtaccaaagtttgggatcaaaagaagcagcagtaagaataacttgagggaaactagttgcagctggaatac |
25912662 |
T |
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| Q |
221 |
taccattcaatcttatccccttaccaacataagaaacaccatgcaaagcttcattccaccatt |
283 |
Q |
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| T |
25912663 |
taccattcaatattatccccataccaacataagaaacaccatgcaaagcttcattccaccatt |
25912725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 112 - 283
Target Start/End: Original strand, 25929018 - 25929189
Alignment:
| Q |
112 |
aaacataggttaaaagagttactaaccttactgattcggtaccaaagtttgggatcaaaagaagctgctatgagaataatttgagggaaactagttgcag |
211 |
Q |
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|||||| | |||||||||||||| |||||||||||| ||||||||||||| | |||||||||||| || | ||||||| ||||||||||||||| ||| |
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| T |
25929018 |
aaacatggattaaaagagttactgaccttactgatttggtaccaaagtttagaatcaaaagaagcagccgtaagaataacttgagggaaactagtagcac |
25929117 |
T |
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| Q |
212 |
ctgtaatactaccattcaatcttatccccttaccaacataagaaacaccatgcaaagcttcattccaccatt |
283 |
Q |
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||| || ||| ||||||||||||||||| |||||| ||| || |||||| ||||| ||||||| |||||||| |
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| T |
25929118 |
ctgcaacactgccattcaatcttatccctttaccagcattagcaacaccgtgcaacgcttcatcccaccatt |
25929189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 126 - 283
Target Start/End: Complemental strand, 25956637 - 25956474
Alignment:
| Q |
126 |
agagttactaaccttactgattcggtaccaaagtttgggatcaaaagaagctgctatgagaataatttgagggaaactagttgcagctgtaat------a |
219 |
Q |
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||||| || |||||||||||| |||||||||||||||| |||||||||||| || ||||||||| |||||||||| ||||||||||| |||| | |
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| T |
25956637 |
agagtgaccaaccttactgatccggtaccaaagtttggaatcaaaagaagcagcagtgagaataacttgagggaaaatagttgcagctttaatagttaca |
25956538 |
T |
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| Q |
220 |
ctaccattcaatcttatccccttaccaacataagaaacaccatgcaaagcttcattccaccatt |
283 |
Q |
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| ||||||||||||||||| |||||| || | |||||| ||||| |||||| ||||||||| |
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| T |
25956537 |
ttcccattcaatcttatccctttaccataatctgcaacaccgtgcaacgcttcactccaccatt |
25956474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 42368383 - 42368411
Alignment:
| Q |
10 |
aaatgaaatccaaaaataagttaaggacc |
38 |
Q |
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| T |
42368383 |
aaatgaaatccaaaaataagttaaggacc |
42368411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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