View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6577_high_18 (Length: 289)
Name: NF6577_high_18
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 52264167 - 52263887
Alignment:
| Q |
15 |
tctactacggattaataacagtaaactcgtataatgaagtcttacttcataacattcctcttaaaatttccattaatagcttcttcggnnnnnnnnn--- |
111 |
Q |
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| T |
52264167 |
tctactacggattaataacagtaaactcgtataataaagtcttacttcataacattcctcttaaaatttccattaatagcttcttcaaaaaaaaaaaaaa |
52264068 |
T |
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| Q |
112 |
---tcccattaatagcatcataattgagtttctttatcggataccttaagcaagataaatactaaatggtcaactcgtaacttaataaattacaaattta |
208 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
52264067 |
aaatcccattaatagcatcataattgagtttctttattggataccttaagcaagataaatactcaatagtcaactcgtaacttaataaattacaaattta |
52263968 |
T |
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| Q |
209 |
actacatatacttctggtgttcttctacttaagttgaaaccaagaacatgttccnnnnnnntacaaaactcactcaaacat |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52263967 |
actacatatacttctggtgttcttctacttaagttgaaaccaagaacatgttccaaaaaaatacaaaactcactcaaacat |
52263887 |
T |
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