View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6577_high_19 (Length: 285)

Name: NF6577_high_19
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6577_high_19
NF6577_high_19
[»] chr1 (15 HSPs)
chr1 (1-265)||(52263650-52263899)
chr1 (183-253)||(10324953-10325024)
chr1 (183-265)||(48549017-48549098)
chr1 (194-245)||(33693031-33693083)
chr1 (183-265)||(8381965-8382048)
chr1 (183-260)||(9939736-9939814)
chr1 (183-247)||(28083909-28083974)
chr1 (186-249)||(3515820-3515884)
chr1 (187-265)||(1514346-1514425)
chr1 (226-260)||(43959638-43959672)
chr1 (228-260)||(1233350-1233382)
chr1 (186-265)||(6021806-6021886)
chr1 (186-249)||(11049252-11049316)
chr1 (226-258)||(17284139-17284171)
chr1 (204-247)||(29759632-29759676)
[»] chr7 (6 HSPs)
chr7 (183-265)||(38123669-38123752)
chr7 (183-257)||(30182307-30182382)
chr7 (183-265)||(597949-598031)
chr7 (228-266)||(18349820-18349858)
chr7 (145-173)||(883341-883369)
chr7 (145-173)||(1242670-1242698)
[»] chr6 (9 HSPs)
chr6 (183-265)||(852531-852614)
chr6 (183-265)||(1485149-1485232)
chr6 (183-265)||(34620885-34620968)
chr6 (183-265)||(34748322-34748405)
chr6 (185-266)||(882687-882769)
chr6 (194-253)||(9505780-9505840)
chr6 (194-253)||(30926793-30926853)
chr6 (194-265)||(31305850-31305922)
chr6 (183-215)||(35098228-35098260)
[»] chr8 (2 HSPs)
chr8 (183-265)||(26100149-26100232)
chr8 (183-265)||(13384657-13384740)
[»] chr5 (5 HSPs)
chr5 (194-256)||(24306108-24306171)
chr5 (194-256)||(24367145-24367208)
chr5 (186-253)||(36639939-36640007)
chr5 (228-260)||(7925431-7925463)
chr5 (228-260)||(29923287-29923319)
[»] chr2 (10 HSPs)
chr2 (184-250)||(42982544-42982611)
chr2 (183-254)||(10618955-10619027)
chr2 (38-109)||(38191998-38192070)
chr2 (145-192)||(7629750-7629797)
chr2 (183-265)||(42740976-42741059)
chr2 (184-224)||(488565-488605)
chr2 (148-192)||(3654743-3654787)
chr2 (183-250)||(4894175-4894243)
chr2 (204-251)||(41494088-41494136)
chr2 (194-265)||(44439264-44439336)
[»] chr3 (6 HSPs)
chr3 (183-260)||(7717336-7717407)
chr3 (186-265)||(3776524-3776604)
chr3 (187-258)||(27266804-27266876)
chr3 (196-260)||(38332562-38332627)
chr3 (183-265)||(35058360-35058444)
chr3 (194-249)||(35253486-35253542)
[»] chr4 (8 HSPs)
chr4 (194-265)||(10185204-10185276)
chr4 (183-258)||(32818380-32818456)
chr4 (194-259)||(37439155-37439221)
chr4 (194-258)||(33843987-33844052)
chr4 (183-253)||(29904231-29904302)
chr4 (227-265)||(32100336-32100374)
chr4 (226-255)||(47596314-47596343)
chr4 (42-109)||(9504582-9504650)
[»] scaffold0361 (1 HSPs)
scaffold0361 (183-260)||(14122-14199)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 52263899 - 52263650
Alignment:
Q  1 ctcactcaaacatcccgagtgtatgtttggactggtagtgagattggcagaatcacaatgagccaccacgatttggcaaacactatacttcagagcttca 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52263899 ctcactcaaacatcccaagtgtatgtttggactggtagtgagattggcagaatcacaatgagccaccacgatttggcaaacactgtacttcagagcttca 52263800  T
Q  101 acaaaatcatagtgccaaattcacagcccatccaaacatactactttagtgtatgtttggttccacttttgaagtagtcatgattgattctatttgaagc 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52263799 acaaaatcatagtgccaaactcacagcccatccaaacatactactttagtgtatgtttggttccacttttgaagtagtcataattgattctatttgaagc 52263700  T
Q  201 tagaaattgtagcttctgattcattattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    ||               ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52263699 ta---------------gattcattattgatttttacactcaaatttattgtttaactcagtttt 52263650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 10325024 - 10324953
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtt 253  Q
    ||||| |||| |||||| ||||||||||||||| |||||| || ||||||||||||||||||||||||||||    
T  10325024 attgagtctacttgaagatagaaattgtagcttttgattctataattgatttttacactcaaatttattgtt 10324953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 48549098 - 48549017
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    |||||||||| ||||||||||||||||||||||||||||| |  ||||||||||| ||||  |||||||||| |||||| ||||    
T  48549098 attgattctacttgaagctagaaattgtagcttctgattctagaattgatttttaaactc--atttattgttcaactcactttt 48549017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 33693031 - 33693083
Alignment:
Q  194 ttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaat 245  Q
    |||||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  33693031 ttgaagctagaaattgtagcttttgattctataattgatttttacactcaaat 33693083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 8381965 - 8382048
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    |||||||||| |||||||||||||||||||| |||  ||| |  ||||||||||||| |||| ||||||||| |||||| ||||    
T  8381965 attgattctacttgaagctagaaattgtagcctctagttctagaattgatttttacattcaagtttattgttcaactcactttt 8382048  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 9939814 - 9939736
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattcatta-ttgatttttacactcaaatttattgtttaactca 260  Q
    |||||||||| |  |||||| |||||||||||||| |||| ||| |||| ||||||||||||||||||| || ||||||    
T  9939814 attgattctactataagctaaaaattgtagcttctaattccttaattgaattttacactcaaatttattattcaactca 9939736  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 28083974 - 28083909
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaattt 247  Q
    |||||||||| |||||||||||| ||||||||| |||||| || ||| |||||||||| |||||||    
T  28083974 attgattctacttgaagctagaatttgtagcttttgattctataattaatttttacacacaaattt 28083909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 3515820 - 3515884
Alignment:
Q  186 gattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttat 249  Q
    ||||||| |||||||||||||||||||||| | |||| |  ||||||||||||||||||| ||||    
T  3515820 gattctacttgaagctagaaattgtagcttttcattctagaattgatttttacactcaaaattat 3515884  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 1514346 - 1514425
Alignment:
Q  187 attctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    |||||| |||||||||| | ||||||||| | |||  || |||||||||||||| ||||||||||||| |||||| ||||    
T  1514346 attctacttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaactcattttt 1514425  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 43959638 - 43959672
Alignment:
Q  226 attgatttttacactcaaatttattgtttaactca 260  Q
    ||||||||||| |||||||||||||||||||||||    
T  43959638 attgatttttagactcaaatttattgtttaactca 43959672  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 1233350 - 1233382
Alignment:
Q  228 tgatttttacactcaaatttattgtttaactca 260  Q
    |||||||||||||||||||||||||| ||||||    
T  1233350 tgatttttacactcaaatttattgttgaactca 1233382  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 6021806 - 6021886
Alignment:
Q  186 gattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    ||||||| |||||||||| |  |||||||| |||||| || || ||||||||||||||| ||||| ||| |||||| ||||    
T  6021806 gattctacttgaagctaggatatgtagcttttgattctataatagatttttacactcaagtttatggttcaactcactttt 6021886  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 11049252 - 11049316
Alignment:
Q  186 gattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttat 249  Q
    ||||||| |||||||||| | ||||||||| |||||| |  |||||||||||||| |||||||||    
T  11049252 gattctacttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttat 11049316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 17284139 - 17284171
Alignment:
Q  226 attgatttttacactcaaatttattgtttaact 258  Q
    |||||||||||||||||||||||||||| ||||    
T  17284139 attgatttttacactcaaatttattgttcaact 17284171  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 29759632 - 29759676
Alignment:
Q  204 aaattgtagcttctgattc-attattgatttttacactcaaattt 247  Q
    |||||| |||||||||||| || ||||||||||||||||||||||    
T  29759632 aaattggagcttctgattctataattgatttttacactcaaattt 29759676  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 38123752 - 38123669
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    |||||||||| |||||||||||||||||||||||| |||| |  |||||||||||||||||||||||||| | |||||| ||||    
T  38123752 attgattctacttgaagctagaaattgtagcttctaattctagaattgatttttacactcaaatttattggtcaactcactttt 38123669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 30182382 - 30182307
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaac 257  Q
    |||||||||| ||||||||| |||||||||||| |||||| |  ||| ||||||||||||||||||||||||||||    
T  30182382 attgattctacttgaagctaaaaattgtagcttttgattctagaattaatttttacactcaaatttattgtttaac 30182307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 598031 - 597949
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    |||||||||| ||||||||| ||||||||||||  ||||| || ||||||| || |||| |||||||||||| |||||| ||||    
T  598031 attgattctacttgaagcta-aaattgtagctttcgattctataattgattcttgcactaaaatttattgttcaactcactttt 597949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 266
Target Start/End: Original strand, 18349820 - 18349858
Alignment:
Q  228 tgatttttacactcaaatttattgtttaactcagttttg 266  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  18349820 tgatttttacactcaaatttattgttcaactcaattttg 18349858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 173
Target Start/End: Original strand, 883341 - 883369
Alignment:
Q  145 tttagtgtatgtttggttccacttttgaa 173  Q
    |||||||||||||||||||||||||||||    
T  883341 tttagtgtatgtttggttccacttttgaa 883369  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 173
Target Start/End: Original strand, 1242670 - 1242698
Alignment:
Q  145 tttagtgtatgtttggttccacttttgaa 173  Q
    |||||||||||||||||||||||||||||    
T  1242670 tttagtgtatgtttggttccacttttgaa 1242698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 852531 - 852614
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    |||||||| | ||||||||||||||||||| ||||||||| |  |||||||||||||| ||||| |||||||||||||| ||||    
T  852531 attgattcaacttgaagctagaaattgtaggttctgattctagaattgatttttacacccaaatgtattgtttaactcactttt 852614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 1485232 - 1485149
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    |||||||||| ||||| |||||||||| ||||| |||||| |  ||||||||| |||||||||||||||||| |||||| ||||    
T  1485232 attgattctacttgaatctagaaattggagcttttgattctagaattgattttaacactcaaatttattgttcaactcactttt 1485149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 34620885 - 34620968
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    ||||||||||  |||||||||||||  ||||||||||||| |  ||||||||||||||| ||||||||| || |||||| ||||    
T  34620885 attgattctacatgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactcactttt 34620968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 34748322 - 34748405
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    ||||||||||  |||||||||||||  ||||||||||||| |  ||||||||||||||| ||||||||| || |||||| ||||    
T  34748322 attgattctacatgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactcactttt 34748405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 882687 - 882769
Alignment:
Q  185 tgattctatttgaagctagaaattgtagcttctgattcatta-ttgatttttacactcaaatttattgtttaactcagttttg 266  Q
    |||||||| ||||||||| | | | ||| ||||||||||  | |||||||||||| ||||||||||||||||||||| |||||    
T  882687 tgattctacttgaagctaaacagtctaggttctgattcaaaaattgatttttacattcaaatttattgtttaactcacttttg 882769  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 9505780 - 9505840
Alignment:
Q  194 ttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtt 253  Q
    |||||| ||||||||| ||||| |||||| || ||||||||||| ||||||||||||||||    
T  9505780 ttgaagatagaaattggagcttttgattctatgattgatttttaaactcaaatttattgtt 9505840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 30926853 - 30926793
Alignment:
Q  194 ttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtt 253  Q
    |||||||||||||||| || || | |||| |  ||||||||||||||||||||||||||||    
T  30926853 ttgaagctagaaattggagttttttattctagaattgatttttacactcaaatttattgtt 30926793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 31305922 - 31305850
Alignment:
Q  194 ttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    ||||||||| |||||| ||||| |||||| |  |||||||| ||||||||||||||||| | |||||| ||||    
T  31305922 ttgaagctaaaaattggagcttttgattctagaattgatttatacactcaaatttattgatcaactcactttt 31305850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 35098260 - 35098228
Alignment:
Q  183 attgattctatttgaagctagaaattgtagctt 215  Q
    |||||||||| ||||||||||||||||||||||    
T  35098260 attgattctaattgaagctagaaattgtagctt 35098228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 26100232 - 26100149
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    |||| |||||||||||||||| | ||||||||| |||||| || |||||||||||||| ||||||||| ||| |||||| ||||    
T  26100232 attggttctatttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcactttt 26100149  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 13384740 - 13384657
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    |||||||||||||||||||| || ||||||||| |||||| |  ||||||||| |||| ||||||||| ||| |||||| ||||    
T  13384740 attgattctatttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcactttt 13384657  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 24306171 - 24306108
Alignment:
Q  194 ttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaa 256  Q
    |||||| ||||||||||| ||| |||||| || |||||||||||||||||||||||||||||||    
T  24306171 ttgaagttagaaattgtaacttttgattctataattgatttttacactcaaatttattgtttaa 24306108  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 24367145 - 24367208
Alignment:
Q  194 ttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaa 256  Q
    |||||| ||||||||||| ||| |||||| || |||||||||||||||||||||||||||||||    
T  24367145 ttgaagttagaaattgtaacttttgattctataattgatttttacactcaaatttattgtttaa 24367208  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 36639939 - 36640007
Alignment:
Q  186 gattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtt 253  Q
    ||||||| |||||||| ||||||||||||||| |||| |  |||| |||||||||||||||||| ||||    
T  36639939 gattctacttgaagctggaaattgtagcttctaattctagaattgttttttacactcaaatttaatgtt 36640007  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 7925431 - 7925463
Alignment:
Q  228 tgatttttacactcaaatttattgtttaactca 260  Q
    |||||||||||||||||||||||||| ||||||    
T  7925431 tgatttttacactcaaatttattgttcaactca 7925463  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 29923287 - 29923319
Alignment:
Q  228 tgatttttacactcaaatttattgtttaactca 260  Q
    ||||||||||||||||||||| |||||||||||    
T  29923287 tgatttttacactcaaatttaatgtttaactca 29923319  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 42982544 - 42982611
Alignment:
Q  184 ttgattctatttgaagctagaaattgtagcttctgatt-cattattgatttttacactcaaatttatt 250  Q
    ||||||||| |||||||||||||||||||||| ||||| ||  |||||||||||||| ||||||||||    
T  42982544 ttgattctacttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaatttatt 42982611  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 10619027 - 10618955
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgttt 254  Q
    |||||||||| |||||||||||||||  ||||| |||||| || ||||||||| |||||||||||| ||||||    
T  10619027 attgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgttt 10618955  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 38191998 - 38192070
Alignment:
Q  38 gtgagattggcagaatcacaatgagccaccacgatt-tggcaaacactatacttcagagcttcaacaaaatca 109  Q
    ||||||||| |||||| ||||  | ||||||||||| ||||||| |||| |||||| ||||||||||||||||    
T  38191998 gtgagattgacagaattacaacaaaccaccacgattctggcaaaaactacacttcaaagcttcaacaaaatca 38192070  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 7629750 - 7629797
Alignment:
Q  145 tttagtgtatgtttggttccacttttgaagtagtcatgattgattcta 192  Q
    ||||||||||||||||||||||||||| || || || |||||||||||    
T  7629750 tttagtgtatgtttggttccacttttggaggagccaagattgattcta 7629797  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 42740976 - 42741059
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    |||||||||| |||||||||  | ||||||||| |||||| |  ||||||||||||||||||||||| |||  |||||| ||||    
T  42740976 attgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacactcaaatttactgtccaactcactttt 42741059  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 488565 - 488605
Alignment:
Q  184 ttgattctatttgaagctagaaattgtagcttctgattcat 224  Q
    ||||||||| |||| ||||||||||||||||||| ||||||    
T  488565 ttgattctacttgaggctagaaattgtagcttctaattcat 488605  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 3654787 - 3654743
Alignment:
Q  148 agtgtatgtttggttccacttttgaagtagtcatgattgattcta 192  Q
    |||||||||||||||||||||||| || || ||| ||||||||||    
T  3654787 agtgtatgtttggttccacttttggaggaggcataattgattcta 3654743  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 4894243 - 4894175
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttatt 250  Q
    |||||||| | ||||| |||||||| ||||||| |||||| || ||||||| ||| |||||||||||||    
T  4894243 attgattcaacttgaaactagaaatcgtagcttttgattctataattgattattatactcaaatttatt 4894175  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 41494136 - 41494088
Alignment:
Q  204 aaattgtagcttctgattc-attattgatttttacactcaaatttattg 251  Q
    ||||||||||||||||||  || ||||||||||||||| ||||||||||    
T  41494136 aaattgtagcttctgattttataattgatttttacacttaaatttattg 41494088  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 44439264 - 44439336
Alignment:
Q  194 ttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    ||||||||| || ||| ||||| |||||| |  ||||||||| |||||||||||||||||| |||||| ||||    
T  44439264 ttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactcactttt 44439336  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 7717407 - 7717336
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattcattattgatttttacactcaaatttattgtttaactca 260  Q
    |||||||||| |||||||||||||||||||||||||||||    | ||  ||||||||||||||||||||| ||||||    
T  7717407 attgattctacttgaagctagaaattgtagcttctgattc----tcga--tttacactcaaatttattgttcaactca 7717336  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 3776524 - 3776604
Alignment:
Q  186 gattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    ||||||| ||||| ||||||||||||||||||||||| |  ||| |||||||||||||||||| ||| | |||||| ||||    
T  3776524 gattctacttgaatctagaaattgtagcttctgattctagaattaatttttacactcaaatttgttgctgaactcactttt 3776604  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 27266876 - 27266804
Alignment:
Q  187 attctatttgaagctagaaattgtagcttctgattcatta-ttgatttttacactcaaatttattgtttaact 258  Q
    |||||| |||||||||||||||||||||  |||||||  | || |||||||||||||||||||||||| ||||    
T  27266876 attctacttgaagctagaaattgtagctaatgattcaagaattaatttttacactcaaatttattgttcaact 27266804  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 38332627 - 38332562
Alignment:
Q  196 gaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactca 260  Q
    ||||||| |||||| |||||||||||| |  |||| | ||||||||||||||||||||| ||||||    
T  38332627 gaagctacaaattggagcttctgattctaaaattggtatttacactcaaatttattgttcaactca 38332562  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 35058360 - 35058444
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaat-ttattgtttaactcagtttt 265  Q
    |||||||||| ||| |||||||||||  ||||| |||||| |  ||||||||| |||||||||| |||||||| |||||| ||||    
T  35058360 attgattctacttggagctagaaattcgagcttttgattctagaattgattttaacactcaaatattattgttcaactcactttt 35058444  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 35253542 - 35253486
Alignment:
Q  194 ttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttat 249  Q
    |||||||| ||||| |||||||||| ||| |  ||||||||||||||||||||||||    
T  35253542 ttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttat 35253486  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 10185204 - 10185276
Alignment:
Q  194 ttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactcagtttt 265  Q
    |||||| ||||||||| ||||| |||||| |  |||||| |||||||||||||||||||||||||||| ||||    
T  10185204 ttgaaggtagaaattgaagcttttgattctaaaattgatctttacactcaaatttattgtttaactcactttt 10185276  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 32818456 - 32818380
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaact 258  Q
    ||||||||||||||||||||||| ||||||||| |||||| |  |||||||||| ||| ||||||||| ||| ||||    
T  32818456 attgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaact 32818380  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 37439155 - 37439221
Alignment:
Q  194 ttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactc 259  Q
    ||||||||||||||| |||||| | |||| || |||||||||||||||||| ||||||||| |||||    
T  37439155 ttgaagctagaaattatagcttttaattctataattgatttttacactcaattttattgttcaactc 37439221  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 33843987 - 33844052
Alignment:
Q  194 ttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaact 258  Q
    |||||||||||||||| ||||| |||||| |  ||||||||| |||||||||||||||||| ||||    
T  33843987 ttgaagctagaaattggagcttttgattctaaaattgattttaacactcaaatttattgttcaact 33844052  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 29904231 - 29904302
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtt 253  Q
    |||||||||| || |||| |||||||||||||||| |||| |  | |||| |||||||||||||||||||||    
T  29904231 attgattctacttaaagcaagaaattgtagcttctaattctagaactgatgtttacactcaaatttattgtt 29904302  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 32100336 - 32100374
Alignment:
Q  227 ttgatttttacactcaaatttattgtttaactcagtttt 265  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  32100336 ttgatttttacactcaaatttattgttcaactcactttt 32100374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 255
Target Start/End: Complemental strand, 47596343 - 47596314
Alignment:
Q  226 attgatttttacactcaaatttattgttta 255  Q
    ||||||||||||||||||||||||||||||    
T  47596343 attgatttttacactcaaatttattgttta 47596314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 9504650 - 9504582
Alignment:
Q  42 gattggcagaatcacaatgagccaccacga-tttggcaaacactatacttcagagcttcaacaaaatca 109  Q
    |||||||||||||||| ||||||||| | | |||||||||  ||| ||||  |||||||||||||||||    
T  9504650 gattggcagaatcacagtgagccaccgcaattttggcaaaagctagactttggagcttcaacaaaatca 9504582  T

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Target: scaffold0361 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 14199 - 14122
Alignment:
Q  183 attgattctatttgaagctagaaattgtagcttctgattc-attattgatttttacactcaaatttattgtttaactca 260  Q
    |||||||||| |||||||||| |||  |||||| |||||| |  ||||||||||||||||||||||||| || ||||||    
T  14199 attgattctacttgaagctagcaatc-tagcttatgattctagaattgatttttacactcaaatttatttttcaactca 14122  T

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