View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6577_high_27 (Length: 237)

Name: NF6577_high_27
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6577_high_27
NF6577_high_27
[»] chr5 (6 HSPs)
chr5 (8-196)||(34218738-34218926)
chr5 (20-198)||(29716504-29716683)
chr5 (112-160)||(36196019-36196067)
chr5 (118-175)||(31913805-31913862)
chr5 (112-160)||(15286135-15286183)
chr5 (142-191)||(21490055-21490104)
[»] chr6 (7 HSPs)
chr6 (8-196)||(16439008-16439196)
chr6 (8-186)||(33640888-33641066)
chr6 (19-196)||(28900436-28900614)
chr6 (9-196)||(2607215-2607403)
chr6 (19-196)||(24194789-24194967)
chr6 (9-160)||(31534739-31534876)
chr6 (112-157)||(15381223-15381268)
[»] chr7 (9 HSPs)
chr7 (8-198)||(43172372-43172563)
chr7 (8-196)||(16709844-16710033)
chr7 (8-196)||(17684080-17684269)
chr7 (82-196)||(23017364-23017479)
chr7 (74-190)||(21486508-21486626)
chr7 (82-196)||(42610892-42611007)
chr7 (9-169)||(5771747-5771907)
chr7 (130-196)||(31445774-31445840)
chr7 (112-160)||(1254160-1254208)
[»] chr1 (14 HSPs)
chr1 (8-196)||(32759706-32759895)
chr1 (8-196)||(3593543-3593732)
chr1 (8-196)||(47371174-47371363)
chr1 (6-186)||(35176883-35177064)
chr1 (8-196)||(49236602-49236791)
chr1 (19-196)||(49452665-49452842)
chr1 (8-186)||(42303996-42304175)
chr1 (21-160)||(25253847-25253990)
chr1 (79-175)||(28403606-28403703)
chr1 (117-196)||(19863274-19863353)
chr1 (82-151)||(48966155-48966225)
chr1 (112-191)||(46042300-46042379)
chr1 (112-185)||(226323-226396)
chr1 (136-191)||(52182484-52182539)
[»] chr2 (9 HSPs)
chr2 (8-191)||(38295333-38295518)
chr2 (8-190)||(34342550-34342733)
chr2 (19-196)||(40829951-40830128)
chr2 (8-196)||(31846772-31846961)
chr2 (43-160)||(9731286-9731404)
chr2 (112-191)||(32294266-32294345)
chr2 (53-196)||(18727247-18727391)
chr2 (112-160)||(24026206-24026254)
chr2 (112-191)||(37810501-37810580)
[»] chr8 (17 HSPs)
chr8 (24-196)||(27878216-27878389)
chr8 (24-196)||(28018397-28018570)
chr8 (20-196)||(12737688-12737865)
chr8 (46-196)||(27915160-27915311)
chr8 (46-196)||(27961579-27961730)
chr8 (9-186)||(42423513-42423690)
chr8 (37-196)||(27974572-27974732)
chr8 (37-196)||(28031841-28032001)
chr8 (8-188)||(12522018-12522199)
chr8 (9-151)||(6387748-6387891)
chr8 (53-175)||(27869566-27869688)
chr8 (112-196)||(44977142-44977226)
chr8 (79-185)||(8029468-8029574)
chr8 (79-171)||(3007439-3007532)
chr8 (114-196)||(24082612-24082694)
chr8 (112-175)||(33177495-33177558)
chr8 (8-64)||(41394247-41394302)
[»] chr4 (11 HSPs)
chr4 (22-196)||(24966097-24966272)
chr4 (22-196)||(33139115-33139291)
chr4 (8-186)||(32890183-32890361)
chr4 (74-196)||(46862550-46862674)
chr4 (42-186)||(29509677-29509822)
chr4 (8-151)||(46287017-46287162)
chr4 (79-191)||(50517492-50517605)
chr4 (75-160)||(35518150-35518236)
chr4 (135-196)||(26490881-26490942)
chr4 (112-160)||(25842624-25842672)
chr4 (19-58)||(35518238-35518277)
[»] chr3 (8 HSPs)
chr3 (8-196)||(4962315-4962504)
chr3 (8-196)||(43173209-43173398)
chr3 (37-196)||(49458701-49458861)
chr3 (10-196)||(33693574-33693761)
chr3 (42-196)||(7437154-7437308)
chr3 (9-196)||(21386093-21386281)
chr3 (8-71)||(16155455-16155518)
chr3 (134-191)||(21718347-21718404)
[»] scaffold0573 (1 HSPs)
scaffold0573 (19-196)||(9180-9358)
[»] scaffold0013 (1 HSPs)
scaffold0013 (19-196)||(89601-89780)
[»] scaffold0118 (1 HSPs)
scaffold0118 (112-157)||(38244-38289)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 34218738 - 34218926
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||    
T  34218738 ggagcacatatcagttagggttgcaattccgacggtggaaattcagatttcgacgccggtgattgtgacgtcagttagggttgcggtggtggtgtttgtt 34218837  T
Q  108 gatctttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  34218838 gatctttgaagaaattaactaatttattttctagatagttttatcaacaacttcaagaacttgtaaaagttacatttttggatgatttt 34218926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 29716683 - 29716504
Alignment:
Q  20 agttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaag 118  Q
    |||||||||||| |||||||| |||||||||||| ||||||| ||| |||||  |||||||||||||||| ||||| || || ||||||| |||| ||||    
T  29716683 agttagggttgcgatttcgacggtggaaattcagttttcgacaccgatgattacgacgtcggttagggttacggtggtggtgcttgttgaccttttgaag 29716584  T
Q  119 aaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgattttgt 198  Q
    |||||||||| |||||||||||||||||||||| || ||||| | ||||||||| || || |||||||| ||| ||||||    
T  29716583 aaattaactagtttattttttagatagttttattaaaaactttaggaacttgtgtaacttgcttttttgaatggttttgt 29716504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 36196067 - 36196019
Alignment:
Q  112 tttgaagaaattaactaatttattttttagatagttttatcaacaactt 160  Q
    ||||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  36196067 tttgaagaaattaactagtttattttttggatagttttattaacaactt 36196019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 31913805 - 31913862
Alignment:
Q  118 gaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaa 175  Q
    ||||||||||| |||||||||| ||||| ||||| |||||||| || |||||||||||    
T  31913805 gaaattaactagtttattttttggataggtttattaacaactttaaaaacttgtgaaa 31913862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 15286183 - 15286135
Alignment:
Q  112 tttgaagaaattaactaatttattttttagatagttttatcaacaactt 160  Q
    ||||||||||||||||  |||||||||| ||||||||||| ||||||||    
T  15286183 tttgaagaaattaacttgtttattttttggatagttttattaacaactt 15286135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 21490055 - 21490104
Alignment:
Q  142 atagttttatcaacaacttcaagaacttgtgaaagttacttttttggatg 191  Q
    |||||||||| |||||||| |||||||||||||| || | ||||||||||    
T  21490055 atagttttattaacaactttaagaacttgtgaaacttgcctttttggatg 21490104  T

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Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 16439008 - 16439196
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| | ||||||||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| ||| || ||||||||    
T  16439008 ggagcacataccagttagggttgcgatct-gacagtggaaatttagatttcgacgccggtgattgcgacgttggttagggttgcagtggtggtgtttgtt 16439106  T
Q  108 gatcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    || |||| |||||||||||||| |||||||||||||||||||||| |||||||| |  ||||||||||| || |||||||||||| ||||    
T  16439107 gaccttttgaagaaattaactagtttattttttagatagttttattaacaactttagaaacttgtgaaacttgcttttttggatggtttt 16439196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 33641066 - 33640888
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| | |||||| ||||||| || | || ||||||||||||||||||||| ||||||||| ||||   ||||||||||||||| || |||| |||    
T  33641066 ggagcacataccagttatggttgca-ttccaacggtggaaattcagatttcgacgtcggtgattgcgacgcaagttagggttgcggtggtggtgttagtt 33640968  T
Q  108 gatcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttactttttt 186  Q
    || |||| |||||||||||||| |||||||||||||||||||||| |||||||| | ||| |||||||| || |||||||    
T  33640967 gaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaacttcctttttt 33640888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 28900614 - 28900436
Alignment:
Q  19 cagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaa 117  Q
    ||||||||||||  |||||||| ||||||||||| ||||| |||||| | |||| |||  ||||||||||||  ||| |  |||||||||  |||| |||    
T  28900614 cagttagggttgtgatttcgacggtggaaattcatatttcaacgccgtttattgcgacaccggttagggttgttgtggtagtgtttgttgtccttttgaa 28900515  T
Q  118 gaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    ||||||||||| |||||||||||||||||||||| |||||||| | |||||||||||| || |||||||||||| ||||    
T  28900514 gaaattaactagtttattttttagatagttttattaacaactttaggaacttgtgaaacttgcttttttggatggtttt 28900436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 2607215 - 2607403
Alignment:
Q  9 gagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttg 108  Q
    ||||||| | |||||||  |||| ||| |||| ||||||||||| ||||||||  ||||||||| |||| |||||||||||| |||| |  |||||||||    
T  2607215 gagcacataccagttagcattgcgattccgacggtggaaattcatatttcgacatcggtgattgcgacgccggttagggttgtggtggtagtgtttgttg 2607314  T
Q  109 atcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    | |||| ||| |||||||||| ||| |||||||||||||||| | |||||||| |  ||||||| ||| || |||||||||||||||||    
T  2607315 accttttgaaaaaattaactagtttcttttttagatagtttttttaacaactttagaaacttgtaaaacttgcttttttggatgatttt 2607403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 24194789 - 24194967
Alignment:
Q  19 cagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaa 117  Q
    ||||||||||||| | | |||| ||||||||||| |||| |||| ||||||||   ||   ||||||| |||||||| ||  ||||| ||| |||| |||    
T  24194789 cagttagggttgcgactccgacggtggaaattcatattttgacgtcggtgattacaacactggttaggattgcggtggtggagtttgctgaccttttgaa 24194888  T
Q  118 gaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    ||||||||||| |||||||||||||||||||||  |||||||| | ||| |||||||| || |||||||||||| ||||    
T  24194889 gaaattaactagtttattttttagatagttttaataacaactttaggaatttgtgaaactttcttttttggatggtttt 24194967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 31534876 - 31534739
Alignment:
Q  9 gagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttg 108  Q
    ||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||| |               |||||||||||| ||| |||||||||    
T  31534876 gagcacatatcagttagggttgcgatttcgacggtggaaattcagatttcgacgccgat---------------tagggttgcggtcatggtgtttgttg 31534792  T
Q  109 atcttt-gaagaaattaactaatttattttttagatagttttatcaacaactt 160  Q
    |||||| ||||||||||| || ||||||| |||||||||||||| ||||||||    
T  31534791 atcttttgaagaaattaagtagtttatttcttagatagttttattaacaactt 31534739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 15381268 - 15381223
Alignment:
Q  112 tttgaagaaattaactaatttattttttagatagttttatcaacaa 157  Q
    ||||||||||||||||  |||||||||| ||||||||||| |||||    
T  15381268 tttgaagaaattaacttgtttattttttggatagttttattaacaa 15381223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 43172372 - 43172563
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| | ||||||||||||| |||  |||  ||||||||||||||||||||||| |||||| |||  ||||||||||||||||| || ||| ||||    
T  43172372 ggagcacataccagttagggttgcgattctgacgatggaaattcagatttcgacgccgatgattgcgacaccggttagggttgcggtggtggtgtctgtt 43172471  T
Q  108 gatcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgattttgt 198  Q
    || |||| |||||||||||||| |||||||||||||||||||||| |||||||| | |||||||||||| || |||||||||||| ||||||    
T  43172472 gaccttttgaagaaattaactagtttattttttagatagttttattaacaactttacgaacttgtgaaacttgcttttttggatggttttgt 43172563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 16709844 - 16710033
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| | ||||||||||||| ||| |||| ||||||||||||||||| ||| ||||||||| |||  | ||||||||||||||| |||||||||||    
T  16709844 ggagcacataccagttagggttgcgattccgacggtggaaattcagatttcaacgtcggtgattgcgacaccagttagggttgcggtggtgatgtttgtt 16709943  T
Q  108 gatc-tttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    || | ||||||||||||||||  ||||||||||||||||| |||| |||||||| | |||||||||||| || |||||||||||| ||||    
T  16709944 gaccttttgaagaaattaacttgtttattttttagatagtcttattaacaactttaggaacttgtgaaacttgcttttttggatggtttt 16710033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 17684080 - 17684269
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| | ||||||||||||| ||| |||| ||||||||||||||||| ||| ||||||||| |||  | ||||||||||||||| |||||||||||    
T  17684080 ggagcacataccagttagggttgcgattccgacggtggaaattcagatttcaacgtcggtgattgcgacaccagttagggttgcggtggtgatgtttgtt 17684179  T
Q  108 gatc-tttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    || | ||||||||||||||||  ||||||||||||||||| |||| |||||||| | |||||||||||| || |||||||||||| ||||    
T  17684180 gaccttttgaagaaattaacttgtttattttttagatagtcttattaacaactttaggaacttgtgaaacttgcttttttggatggtttt 17684269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 196
Target Start/End: Original strand, 23017364 - 23017479
Alignment:
Q  82 ttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttac 180  Q
    |||||||||||||| || |||||||||| |||| ||| |||||||||| |||||||||||||||||||||| |||||||| |  ||||||||||| || |    
T  23017364 ttagggttgcggtggtggtgtttgttgaccttttgaaaaaattaactagtttattttttagatagttttattaacaactttagaaacttgtgaaacttgc 23017463  T
Q  181 ttttttggatgatttt 196  Q
    ||||||||||| ||||    
T  23017464 ttttttggatggtttt 23017479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 21486508 - 21486626
Alignment:
Q  74 gacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttatttt-ttagatagttttatcaacaacttcaagaacttgt 171  Q
    |||| |||||||| |||| ||| || |||||||||| |||| ||| |||||||||| |||||||| |||||||||||||| |||||||| | ||||||||    
T  21486508 gacgccggttaggattgcagtggtggtgtttgttgaccttttgaaaaaattaactagtttatttttttagatagttttattaacaactttaggaacttgt 21486607  T
Q  172 gaaagttacttttttggat 190  Q
    |||| || |||||||||||    
T  21486608 gaaacttgcttttttggat 21486626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 196
Target Start/End: Original strand, 42610892 - 42611007
Alignment:
Q  82 ttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttac 180  Q
    ||||| || ||||| || |||||||||| |||| ||| |||||||||| | || ||||||||| ||||||| |||||||| | |||||||||||| || |    
T  42610892 ttaggattacggtggtggtgtttgttgaccttttgaaaaaattaactagtctagtttttagatggttttattaacaactttaggaacttgtgaaacttgc 42610991  T
Q  181 ttttttggatgatttt 196  Q
    ||||||||||| ||||    
T  42610992 ttttttggatggtttt 42611007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 5771907 - 5771747
Alignment:
Q  9 gagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttg 108  Q
    ||||||| | ||||||||||| | ||| |||||| |||||||| || | | || |||||||| ||||||  |||||| |||||| || || |||||| ||    
T  5771907 gagcacataccagttagggttacgattccgacaggggaaattctgactgcaacaccggtgatcgtgacgctggttagagttgcgatggtggtgtttgatg 5771808  T
Q  109 atc-tttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaactt 169  Q
    | | ||||||||||||||| | |||||||||| ||||||||||| || ||||| | ||||||    
T  5771807 accttttgaagaaattaac-agtttatttttttgatagttttattaaaaactttacgaactt 5771747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 31445774 - 31445840
Alignment:
Q  130 tttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    |||||||||||||||||||||| |||||||| | |||||||||||| || | |||||||||| ||||    
T  31445774 tttattttttagatagttttattaacaactttaggaacttgtgaaacttgcatttttggatggtttt 31445840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 1254208 - 1254160
Alignment:
Q  112 tttgaagaaattaactaatttattttttagatagttttatcaacaactt 160  Q
    |||||||||| ||||||||||||||||| ||||| ||||| ||||||||    
T  1254208 tttgaagaaactaactaatttattttttggataggtttattaacaactt 1254160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 32759895 - 32759706
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| ||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||| | || ||||||||    
T  32759895 ggagcacatatcagttagggttgcgattccgacggtgaaaattcagatttcgacgccggtgattgcgacatcggttagggttgcgggggtggtgtttgtt 32759796  T
Q  108 gatc-tttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    || | ||||||||||||||||| |||||||||||||||||||||| ||||| ||   |||||||| ||| ||  ||||||||||| ||||    
T  32759795 gaccatttgaagaaattaactagtttattttttagatagttttattaacaattttttgaacttgtaaaacttggttttttggatggtttt 32759706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 3593543 - 3593732
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| ||||||||| ||||  |||  |||||||||||||||||||||||||||  |||||| |||  ||||||||||||||||| || ||||||||    
T  3593543 ggagcacatatcagttagtgttgtgattctgacagtggaaattcagatttcgacgccaatgattgcgacaccggttagggttgcggtgttggtgtttgtt 3593642  T
Q  108 gatcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
     | |||| |||||||||||| | |||||||||||||||||||||| |||||||| | | |||||||||| ||||||||||||||| ||||    
T  3593643 taccttttgaagaaattaacaagtttattttttagatagttttattaacaactttacggacttgtgaaacttacttttttggatggtttt 3593732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 47371363 - 47371174
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| | || ||||||||||||||||||| ||||||| | |||||||||||||||||||||  | | |||||||||||| || | || |||| |||    
T  47371363 ggagcacataccaattagggttgcaatttcgacggtggaaacttagatttcgacgccggtgattgcaatgccggttagggttgtggcggtggtgttcgtt 47371264  T
Q  108 gatcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    || |||| |||||||||||||| ||| |||||||||| ||||||| |||||||| |||||||||||||| || |||||||||||| ||||    
T  47371263 gaccttttgaagaaattaactagtttgttttttagattgttttattaacaactttaagaacttgtgaaacttgcttttttggatggtttt 47371174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 35177064 - 35176883
Alignment:
Q  6 gaggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttg 105  Q
    ||||||| || | |||| |||||||| ||| |||| ||||||||||||||||||||| ||||||||| |||| ||||||||||| || || || ||||||    
T  35177064 gaggagcgcataccagtgagggttgcgattccgacggtggaaattcagatttcgacgtcggtgattgcgacgccggttagggttacgttggtggtgtttg 35176965  T
Q  106 ttgatc-tttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttactttttt 186  Q
    |||| | |||||||||||| ||||||||| ||||||||||||||||| |||||| | | |||||||||||| || |||||||    
T  35176964 ttgaccttttgaagaaattcactaatttaatttttagatagttttattaacaacattatgaacttgtgaaacttgctttttt 35176883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 49236791 - 49236602
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| | || |||||||||| |||||||| ||| ||||||||||||||||| || ||||||  |||  ||||| |||||| ||| || | ||||||    
T  49236791 ggagcacataccaattagggttgcgatttcgacggtgaaaattcagatttcgacgtcgatgattgcaacgctggttatggttgctgtggtggtatttgtt 49236692  T
Q  108 gatctttgaa-gaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    || |||| || ||||||||||| |||||||||||||||||||||| |||||||| | |||||| ||||| || |||||||||||| ||||    
T  49236691 gaccttttaaagaaattaactagtttattttttagatagttttattaacaactttaggaacttatgaaactttcttttttggatggtttt 49236602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 49452842 - 49452665
Alignment:
Q  19 cagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatc--tttga 116  Q
    ||||||||||||| ||| | || ||||||| ||| |||||||||||| | |||| |||| ||||||||||||||||| |  ||||||||| ||  |||||    
T  49452842 cagttagggttgcgattccaacggtggaaagtcatatttcgacgccgtttattgcgacgccggttagggttgcggtggtagtgtttgttg-tcgttttga 49452744  T
Q  117 agaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    |||||||||||| |||||||||||||||||||||| ||||| || | |||||||||||| ||  ||||||||||| ||||    
T  49452743 agaaattaactagtttattttttagatagttttattaacaaatttaggaacttgtgaaactt-gttttttggatggtttt 49452665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 42304175 - 42303996
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| | || |||||||||  |||  ||| ||||||||||| ||||| |||||||||||||||||   |||||||||||  ||| || ||||||||    
T  42304175 ggagcacataccatttagggttgtgattcagacggtggaaattcatatttcaacgccggtgattgtgacactggttagggttgttgtggtggtgtttgtt 42304076  T
Q  108 gatcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttactttttt 186  Q
    ||  ||| |||||||||||||| |||||||||||||||||||||| || ||||| | |||||||||||| || |||||||    
T  42304075 gacgttttgaagaaattaactactttattttttagatagttttattaataactttaggaacttgtgaaactttctttttt 42303996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 25253847 - 25253990
Alignment:
Q  21 gttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatc-tttgaaga 119  Q
    ||||||||||| | | | || ||||||||||| ||||||||||||||||||| ||||||   ||||||||||||| || |||||||||| | ||||||||    
T  25253847 gttagggttgcgaatccaacggtggaaattcatatttcgacgccggtgattgcgacgtcaaatagggttgcggtggtggtgtttgttgaccttttgaaga 25253946  T
Q  120 aattaactaat---ttattttttagatagttttatcaacaactt 160  Q
    ||||||||| |   ||||||||||||||||||||| ||||||||    
T  25253947 aattaactagtttattattttttagatagttttattaacaactt 25253990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 28403703 - 28403606
Alignment:
Q  79 cggttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaa 175  Q
    |||||||| |||||||  || |||||||||| |||| |||||||||||||| ||||||||||| |||||||||| |||||||| | ||||||||||||    
T  28403703 cggttaggattgcggtagtggtgtttgttgaccttttgaagaaattaactagtttattttttaaatagttttattaacaactttaggaacttgtgaaa 28403606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 19863274 - 19863353
Alignment:
Q  117 agaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    ||||||| |||| |||||||||||||||||||||| |||||||| | |||||||||||| || |||||||||||| ||||    
T  19863274 agaaatttactagtttattttttagatagttttattaacaactttaggaacttgtgaaacttgcttttttggatggtttt 19863353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 48966225 - 48966155
Alignment:
Q  82 ttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttattttttagatagttttat 151  Q
    |||||||||||||| || |||||||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  48966225 ttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttat 48966155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 46042300 - 46042379
Alignment:
Q  112 tttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatg 191  Q
    ||||| ||||||||||| |||||||||| ||||| ||||| |||||||| |  || |||||||| |||||||||||||||    
T  46042300 tttgacgaaattaactagtttattttttggataggtttattaacaactttagaaaattgtgaaacttacttttttggatg 46042379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 226323 - 226396
Alignment:
Q  112 tttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttt 185  Q
    |||||| |||||||||| |||||||||||||||| ||||| |||||||| |  ||||| ||||| || ||||||    
T  226323 tttgaaaaaattaactagtttattttttagataggtttattaacaactttagaaacttatgaaacttgcttttt 226396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 52182484 - 52182539
Alignment:
Q  136 ttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatg 191  Q
    |||| ||||||||||| |||||||| | |||||||||||  |||||||||||||||    
T  52182484 tttttgatagttttattaacaactttaggaacttgtgaagcttacttttttggatg 52182539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 38295518 - 38295333
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| | ||||||||||||| ||| |||| ||||||||||| ||||||| | |||||||||||||| ||||||||||||||||| || |||||| |    
T  38295518 ggagcacataccagttagggttgcgattccgactgtggaaattcatatttcgatgtcggtgattgtgacgccggttagggttgcggtggtggtgtttgct 38295419  T
Q  108 ga--tctttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatg 191  Q
    ||  | ||||||||||||||||| |||||||||||||||||||||| | |||||| | ||| |||||||| || ||||||||||||    
T  38295418 gacctttttgaagaaattaactagtttattttttagatagttttattagcaactttaggaatttgtgaaactttcttttttggatg 38295333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 34342550 - 34342733
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| | ||||||||||||| ||| | || ||||||||||| |||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||    
T  34342550 ggagcacataccagttagggttgcgattccaacggtggaaattcatatttcgacgctggtaattgcgacgtcggttagggttgtggtggtggtgtttgtt 34342649  T
Q  108 gatc-tttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggat 190  Q
    || | ||| ||||||||||||| |||||||||||||||||||||| ||||||||  | ||||||||||| || || ||||||||    
T  34342650 gaccttttcaagaaattaactagtttattttttagatagttttattaacaactttgaaaacttgtgaaacttgctattttggat 34342733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 40829951 - 40830128
Alignment:
Q  19 cagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaa 117  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||| |||| ||||||||||||| ||| |  |||||||||| |||| |||    
T  40829951 cagttagggttgcgattttgacggtggaaattcagatttccacgctgatgattgcgacg-cggttagggttgcagtggtagtgtttgttgaccttttgaa 40830049  T
Q  118 gaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    ||||||||||| ||||| |||||||| ||||||| |||||||  | |||||||||||| || |||||||||||||||||    
T  40830050 gaaattaactagtttatgttttagatggttttattaacaactataggaacttgtgaaacttgcttttttggatgatttt 40830128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 31846961 - 31846772
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| | ||||||||||||| ||| ||||  |||||||| ||||||| ||||| ||||||| ||||   ||||||||||||||| || ||||||||    
T  31846961 ggagcacataccagttagggttgcgattccgacgatggaaatttagatttcaacgccagtgattgcgacgcttgttagggttgcggtggtggtgtttgtt 31846862  T
Q  108 gatcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    || |||| |||||||||||||| |||||||||||||||||||||| |||||||| | |||||||  ||| || ||||||| |||| ||||    
T  31846861 gaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaacttgcaaaacttgcttttttagatggtttt 31846772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 160
Target Start/End: Original strand, 9731286 - 9731404
Alignment:
Q  43 tggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttattttttag 141  Q
    ||||||||||||||| |||| || |||||| |||| || |||||||||||||| || |||||||||| |||| ||||||||||| || ||||||||||||    
T  9731286 tggaaattcagattttgacgtcgatgattgcgacgccgattagggttgcggtggtggtgtttgttgaccttttgaagaaattaattagtttattttttag 9731385  T
Q  142 atagttttatcaacaactt 160  Q
    |||||||||| ||||||||    
T  9731386 atagttttattaacaactt 9731404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 32294266 - 32294345
Alignment:
Q  112 tttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatg 191  Q
    ||||||||||||||||| |||||||||| ||||||||||| |||||||| | |||||||||||| || ||||||||||||    
T  32294266 tttgaagaaattaactagtttattttttggatagttttattaacaactttaggaacttgtgaaacttgcttttttggatg 32294345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 18727391 - 18727247
Alignment:
Q  53 gatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttattttttagatagttttat 151  Q
    |||| |||| ||| |||||||||||  |||| ||||||||||| || ||||||  || |||| |||||||||||||| || |||||||  ||||||||||    
T  18727391 gattgcgacaccgatgattgtgacgctggttggggttgcggtggtggtgtttgacgaccttttgaagaaattaactagttgattttttgaatagttttat 18727292  T
Q  152 caacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
     |||||||| | |||||||||||  || |||||||||||| ||||    
T  18727291 taacaactttacgaacttgtgaaccttgcttttttggatggtttt 18727247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 24026206 - 24026254
Alignment:
Q  112 tttgaagaaattaactaatttattttttagatagttttatcaacaactt 160  Q
    ||||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  24026206 tttgaagaaattaactagtttattttttggatagttttattaacaactt 24026254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 37810580 - 37810501
Alignment:
Q  112 tttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatg 191  Q
    ||||||||||||||||| |||||||||| ||||| ||||| |||||||| |  ||| ||||||| ||||| ||| |||||    
T  37810580 tttgaagaaattaactagtttattttttggataggtttattaacaactttatcaacatgtgaaacttactctttcggatg 37810501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 196
Target Start/End: Complemental strand, 27878389 - 27878216
Alignment:
Q  24 agggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaagaaat 122  Q
    |||||||  ||| ||| |||||||||| |||||||||||||||||||||| | |||||||||||||||| || || |||||||||| |||| ||||||||    
T  27878389 agggttgtcattccgaaagtggaaatttagatttcgacgccggtgattgttatgtcggttagggttgcgatggtggtgtttgttgaccttttgaagaaat 27878290  T
Q  123 taactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    |||||| |||||||||||||||||||||| | |||||| | |||||||||||| || |||||||||||| ||||    
T  27878289 taactagtttattttttagatagttttattatcaactttaggaacttgtgaaacttgcttttttggatggtttt 27878216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 196
Target Start/End: Complemental strand, 28018570 - 28018397
Alignment:
Q  24 agggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaagaaat 122  Q
    |||||||  ||| ||| |||||||||| |||||||||||||||||||||| | |||||||||||||||| || || |||||||||| |||| ||||||||    
T  28018570 agggttgtcattccgaaagtggaaatttagatttcgacgccggtgattgttatgtcggttagggttgcgatggtggtgtttgttgaccttttgaagaaat 28018471  T
Q  123 taactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    |||||| |||||||||||||||||||||| | |||||| | |||||||||||| || |||||||||||| ||||    
T  28018470 taactagtttattttttagatagttttattatcaactttaggaacttgtgaaacttgcttttttggatggtttt 28018397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 12737865 - 12737688
Alignment:
Q  20 agttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaag 118  Q
    |||||||||||| ||| |||| ||| ||||||||||||||| |||| |||||| ||||| |||||||||||| ||| || |||||||||| |||| ||||    
T  12737865 agttagggttgcgattccgacggtgaaaattcagatttcgatgccgatgattgcgacgttggttagggttgcagtggtggtgtttgttgaccttttgaag 12737766  T
Q  119 aaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    |||||||||| ||||||||| ||||||| |||| |||||||| | |||||||||||| || |||||||||||| ||||    
T  12737765 aaattaactagtttatttttaagatagtattattaacaactttaggaacttgtgaaacttgcttttttggatggtttt 12737688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 46 - 196
Target Start/End: Complemental strand, 27915311 - 27915160
Alignment:
Q  46 aaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttattttttagata 144  Q
    ||||| |||||||||||||||||||||| | |||||||||||||||| || || |||||||||| |||| |||||||||||||| |||||||||||||||    
T  27915311 aaatttagatttcgacgccggtgattgttatgtcggttagggttgcgatggtggtgtttgttgaccttttgaagaaattaactagtttattttttagata 27915212  T
Q  145 gttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    ||||||| ||||| || | |||||||||||| || |||||||||||| ||||    
T  27915211 gttttattaacaattttaggaacttgtgaaacttgcttttttggatggtttt 27915160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 46 - 196
Target Start/End: Complemental strand, 27961730 - 27961579
Alignment:
Q  46 aaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttattttttagata 144  Q
    ||||| |||||||||||||||||||||| | |||||||||||||||| || || |||||||||| |||| |||||||||||||| |||||||||||||||    
T  27961730 aaatttagatttcgacgccggtgattgttatgtcggttagggttgcgatggtggtgtttgttgaccttttgaagaaattaactagtttattttttagata 27961631  T
Q  145 gttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    ||||||| ||||| || | |||||||||||| || |||||||||||| ||||    
T  27961630 gttttattaacaattttaggaacttgtgaaacttgcttttttggatggtttt 27961579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 42423513 - 42423690
Alignment:
Q  9 gagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttg 108  Q
    ||||||| | |||||| ||||||| || | || ||||||||||||||||||||||||||||||| |||| | ||||||||||||||| || |||| ||||    
T  42423513 gagcacataccagttatggttgca-ttccaacggtggaaattcagatttcgacgccggtgattgcgacgccagttagggttgcggtggtggtgttagttg 42423611  T
Q  109 atcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttactttttt 186  Q
    | |||| |||||||||||||| |||||||||||||||||||||| |||||||| | ||| |||||||| || |||||||    
T  42423612 accttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaacttcctttttt 42423690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 196
Target Start/End: Complemental strand, 27974732 - 27974572
Alignment:
Q  37 cgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttatt 135  Q
    |||| ||||||||| ||||| ||||||||||||||| || | |||||||| || ||||| || |||||||| | |||| |||||||||||||| ||||||    
T  27974732 cgacggtggaaatttagattccgacgccggtgattgcgatgccggttaggatttcggtggtggtgtttgtttaccttttgaagaaattaactagtttatt 27974633  T
Q  136 ttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    |||||| ||||||| |||||||||| | |||||||||||| || |||||||||||| ||||    
T  27974632 ttttaggtagttttgtcaacaactttaggaacttgtgaaacttgcttttttggatggtttt 27974572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 196
Target Start/End: Complemental strand, 28032001 - 28031841
Alignment:
Q  37 cgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttatt 135  Q
    |||| ||||||||| ||||| ||||||||||||||| || | |||||||| || ||||| || |||||||| | |||| |||||||||||||| ||||||    
T  28032001 cgacggtggaaatttagattccgacgccggtgattgcgatgccggttaggatttcggtggtggtgtttgtttaccttttgaagaaattaactagtttatt 28031902  T
Q  136 ttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    |||||| ||||||| |||||||||| | |||||||||||| || |||||||||||| ||||    
T  28031901 ttttaggtagttttgtcaacaactttaggaacttgtgaaacttgcttttttggatggtttt 28031841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 12522199 - 12522018
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| | ||||||||||||| ||| || | ||||||||||||||| |||||||| |||||| |  |||| || ||||||||| | || ||||||||    
T  12522199 ggagcacataccagttagggttgcgattccggcggtggaaattcagattgcgacgccgatgattgcgttgtcgatttgggttgcggcggtggtgtttgtt 12522100  T
Q  108 gatcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttgg 188  Q
    || |||| |||||||||||||| |||||||||| ||||||||||  |||||||| | ||||||||||||  | |||||||||    
T  12522099 gaccttttgaagaaattaactagtttatttttttgatagttttaataacaactttaggaacttgtgaaacatgcttttttgg 12522018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 6387891 - 6387748
Alignment:
Q  9 gagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttg 108  Q
    ||||||| || |||||||||||| |||||||  | |||||||| |||| | ||||||||||||| || || |||||||||||||||| || |||||| ||    
T  6387891 gagcacatattagttagggttgcgatttcgatgggggaaattccgattgcaacgccggtgattgcgatgttggttagggttgcggtggtggtgtttgatg 6387792  T
Q  109 a-tctttgaagaaattaactaatttattttttagatagttttat 151  Q
    | | ||||||||||||| | | |||||||||| |||||||||||    
T  6387791 actttttgaagaaattagccagtttattttttggatagttttat 6387748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 27869688 - 27869566
Alignment:
Q  53 gatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttattttttagatagttttat 151  Q
    |||||||| |||||||||||  |   ||||||||||||||||| || |||||||||| |||| |||||||||||||| ||||||||| ||||||||||||    
T  27869688 gatttcgatgccggtgattgcaatcccggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttt-agatagttttat 27869590  T
Q  152 caacaacttcaagaacttgtgaaa 175  Q
     |||||||| | ||||||||||||    
T  27869589 taacaactttaggaacttgtgaaa 27869566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 44977142 - 44977226
Alignment:
Q  112 tttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||| | |||||||||||| || |||||||| ||| ||||    
T  44977142 tttgaagaaattaactagtttattttttagatagttttattaacaactttaggaacttgtgaaacttgcttttttgaatggtttt 44977226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 8029574 - 8029468
Alignment:
Q  79 cggttagggttgcggtgatgatgtttgttgatctttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagtt 178  Q
    |||||||||||| |||| |  ||||||||||  ||| ||||||||||||| |||||||||||||||||||||| ||||| || | |||||||||||| ||    
T  8029574 cggttagggttgtggtggtagtgtttgttgactttttaagaaattaactagtttattttttagatagttttattaacaattttaggaacttgtgaaactt 8029475  T
Q  179 acttttt 185  Q
     ||||||    
T  8029474 gcttttt 8029468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 3007532 - 3007439
Alignment:
Q  79 cggttagggttgcggtgatgatgtttgttgatc-tttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgt 171  Q
    ||||||| ||||||||| || |||||||||| | ||||||||||||||||| ||||||||||| |||||||||| |||||||| | ||||||||    
T  3007532 cggttagagttgcggtggtgttgtttgttgaccatttgaagaaattaactagtttattttttatatagttttattaacaactttatgaacttgt 3007439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 24082612 - 24082694
Alignment:
Q  114 tgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    |||||||||||| || ||||||||||||||||||| || |||||||| | |||||||||||| || ||||||||||| |||||    
T  24082612 tgaagaaattaagtagtttattttttagatagtttaattaacaactttacgaacttgtgaaacttgcttttttggattatttt 24082694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 33177558 - 33177495
Alignment:
Q  112 tttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaa 175  Q
    |||||| |||||||||| |||||||||| ||||| ||||| |||||||| || |||||||||||    
T  33177558 tttgaaaaaattaactagtttattttttggataggtttattaacaactttaaaaacttgtgaaa 33177495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 41394247 - 41394302
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgcc 64  Q
    |||||||| | ||||||||||||| ||| ||||| || |||||||||||||||||||    
T  41394247 ggagcacataccagttagggttgcgattccgacaatg-aaattcagatttcgacgcc 41394302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 24966272 - 24966097
Alignment:
Q  22 ttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaagaa 120  Q
    |||||||||| |||||||| ||||||| | ||||||||||||||| |||||  | | ||||||||||||||||| || |||||||||| |||| ||||||    
T  24966272 ttagggttgcgatttcgacggtggaaacttagatttcgacgccggagattgcaatgccggttagggttgcggtggtggtgtttgttgaccttttgaagaa 24966173  T
Q  121 attaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    |||||||| ||| |||||||||||||||||| |||||||| | |||||||||||| ||  ||||||||||| ||||    
T  24966172 attaactagtttgttttttagatagttttattaacaactttaggaacttgtgaaacttgtttttttggatggtttt 24966097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 33139115 - 33139291
Alignment:
Q  22 ttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatc-tttgaagaa 120  Q
    |||||||||  ||| |||| |||||||||||||||||||| ||| ||||||  ||| ||||||||||||||||| || |||||||||| | |||||||||    
T  33139115 ttagggttgtgattccgacggtggaaattcagatttcgactccgatgattgcaacgccggttagggttgcggtggtggtgtttgttgaccttttgaagaa 33139214  T
Q  121 attaactaattta-ttttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    |||||||| |||| |||||||||||||||||| |||||||| | |||||||||||| || || ||||||||| ||||    
T  33139215 attaactagtttatttttttagatagttttattaacaactttaggaacttgtgaaacttgctattttggatggtttt 33139291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 32890183 - 32890361
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| | |||||| ||||||| || | || ||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||| || ||||||||    
T  32890183 ggagcacataccagttatggttgca-ttccaacggtggaaattcatatttcgacgtcggtgattgcgacgccggttagggttgcggtggtggtgtttgtt 32890281  T
Q  108 gatc-tttgaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttactttttt 186  Q
    || | ||||||||||||||||| |||||||||||||||||||||| |||||||| | ||| || ||||| || |||||||    
T  32890282 gaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattttgaaacttcctttttt 32890361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 46862674 - 46862550
Alignment:
Q  74 gacgtcggttagggttgcggtgatgatgtttgttgatcttt--gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgt 171  Q
    |||||||||||||||||||||| |  |||||||||| ||||  |||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||    
T  46862674 gacgtcggttagggttgcggtggtagtgtttgttgacctttttgaagaaattaactagtttattttttagatagttttattaacaactttaagaacttgt 46862575  T
Q  172 gaaagttacttttttggatgatttt 196  Q
    |||| || |||||||||||||||||    
T  46862574 gaaacttgcttttttggatgatttt 46862550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 29509822 - 29509677
Alignment:
Q  42 gtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttatttttta 140  Q
    ||||||||||||| ||| ||||||||||||| |||| | ||||||||||||||| || |||||||||| |||| |||||||||||||  |||||||||||    
T  29509822 gtggaaattcagagttcaacgccggtgattgcgacgccagttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactggtttatttttta 29509723  T
Q  141 gatagttttatcaacaacttcaagaacttgtgaaagttactttttt 186  Q
    ||||||||||| |||||||| | ||| |||||||| || |||||||    
T  29509722 gatagttttattaacaacttaaggaaattgtgaaacttcctttttt 29509677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 46287017 - 46287162
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| | ||||||||||||| ||| | ||  |||||||||| |||||||| || ||||||| |||||||||||||||||||||| |||||||||||    
T  46287017 ggagcacataccagttagggttgcgattccaacgatggaaattcaaatttcgactcccgtgattgcgacgtcggttagggttgcggtggtgatgtttgtt 46287116  T
Q  108 gatc-tttgaagaaattaactaattta-ttttttagatagttttat 151  Q
    || | ||||||||||||||||| |||| ||||||||||||||||||    
T  46287117 gaccttttgaagaaattaactagtttatttttttagatagttttat 46287162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 79 - 191
Target Start/End: Original strand, 50517492 - 50517605
Alignment:
Q  79 cggttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagt 177  Q
    ||||||||||||||||| || |||||||||| |||| |||||||||||||| |||||||||||||| | ||||| |||||||| | |||||||||||| |    
T  50517492 cggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatggatttattaacaactttaggaacttgtgaaatt 50517591  T
Q  178 tacttttttggatg 191  Q
    | ||||||||||||    
T  50517592 tgcttttttggatg 50517605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 35518236 - 35518150
Alignment:
Q  75 acgtcggttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttattttttagatagttttatcaacaactt 160  Q
    ||||||||||||||||||||| || | |||||||| |||| |||||||||||||| ||||||| ||  |||||||||| ||||||||    
T  35518236 acgtcggttagggttgcggtggtggtatttgttgaccttttgaagaaattaactagtttatttattgaatagttttattaacaactt 35518150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 26490942 - 26490881
Alignment:
Q  135 tttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    ||||||||||||||||| |||||||| | |||||||||||| || |||||||||||| ||||    
T  26490942 tttttagatagttttattaacaactttaggaacttgtgaaacttgcttttttggatggtttt 26490881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 25842672 - 25842624
Alignment:
Q  112 tttgaagaaattaactaatttattttttagatagttttatcaacaactt 160  Q
    ||||||||||||||||| |||||||||| ||||| ||||| ||||||||    
T  25842672 tttgaagaaattaactagtttattttttggatagctttattaacaactt 25842624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 35518277 - 35518238
Alignment:
Q  19 cagttagggttgcaatttcgacagtggaaattcagatttc 58  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  35518277 cagttagggttgcgatttcgaccgtggaaattcagatttc 35518238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 4962504 - 4962315
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| ||||||||||| ||| |||  ||| |||||||||||  |||||||  || |||||| ||||| |||||||||||||||| || ||||||||    
T  4962504 ggagcacatatcagttagggctgcgattcagacggtggaaattcatgtttcgacatcgatgattgcgacgttggttagggttgcggtggtggtgtttgtt 4962405  T
Q  108 gatcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
     | |||| |||||||||||||| ||||||||||||||||||||||  ||||||| | |||||||||||| || |||||||||||| ||||    
T  4962404 aaccttttgaagaaattaactagtttattttttagatagttttattgacaactttaggaacttgtgaaacttgcttttttggatggtttt 4962315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 43173209 - 43173398
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgtt 107  Q
    |||||||| | ||||||| ||||| ||| ||||  | |||| ||| |||||||||| |||||||| || | ||||||||||||||| |  | ||||||||    
T  43173209 ggagcacataccagttagagttgcgattccgacgatagaaactcatatttcgacgctggtgattgcgatgccggttagggttgcggcggcggtgtttgtt 43173308  T
Q  108 gatcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    || |||| ||||||||||||||||||||||||||||||||||||| |||||||| | ||||| |||||| || |||||||||||| ||||    
T  43173309 gaccttttgaagaaattaactaatttattttttagatagttttattaacaactttaggaactggtgaaacttgcttttttggatggtttt 43173398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 49458701 - 49458861
Alignment:
Q  37 cgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaagaaattaactaatttatt 135  Q
    |||| ||||||||||| || |||||| ||||||||| | || |||||||||||| |||| |  |||||||||| |||| |||||||||||||| ||||||    
T  49458701 cgacggtggaaattcatatatcgacgtcggtgattgcgtcgccggttagggttgtggtggtagtgtttgttgaccttttgaagaaattaactagtttatt 49458800  T
Q  136 ttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    |||||||||||||||| |||||||| | |||||||||||| ||  ||||||||||| ||||    
T  49458801 ttttagatagttttattaacaactttaggaacttgtgaaacttgattttttggatggtttt 49458861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 33693574 - 33693761
Alignment:
Q  10 agcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttga 109  Q
    |||||| | |||||| ||||| ||||||||| | | ||||||||||||| | ||| ||||||| |||| ||  || |||||| ||| || ||||||||||    
T  33693574 agcacataccagttatggttgtaatttcgacggggaaaattcagatttcaatgcctgtgattgcgacgccgactacggttgcagtggtggtgtttgttga 33693673  T
Q  110 tcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
     |||| ||||||||||| || |||||||||||||||||||||| |||||||| | |||||||||||| || |||||||||||| ||||    
T  33693674 ccttttgaagaaattaagtagtttattttttagatagttttattaacaactttaggaacttgtgaaacttgcttttttggatggtttt 33693761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 7437308 - 7437154
Alignment:
Q  42 gtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttga-tctttgaagaaattaactaatttatttttta 140  Q
    ||||||||||||||||||||| | ||||||| ||||  |||||| ||||||||| || |||||||| | | ||||||| ||||||||| |||||||||||    
T  7437308 gtggaaattcagatttcgacgtcagtgattgcgacgctggttagagttgcggtggtggtgtttgtttactttttgaagtaattaactagtttatttttta 7437209  T
Q  141 gatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    ||||||||||| |||||||| | |||||||| ||| ||  ||||||||||| ||||    
T  7437208 gatagttttattaacaactttaggaacttgttaaactt-gttttttggatggtttt 7437154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 21386281 - 21386093
Alignment:
Q  9 gagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttg 108  Q
    ||||||| | ||||||||||| | ||| |||| | |||||||| |||| ||||| ||||| |   || || |||||||||||||||| || |||||| ||    
T  21386281 gagcacataccagttagggttacgattccgacgggggaaattccgattgcgacgtcggtgttaaggatgttggttagggttgcggtggtggtgtttgatg 21386182  T
Q  109 atcttt-gaagaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    | |||| |||||||||||||| |||||||||| || |||||||| |||||||| | |||||||||||| || |||||| ||||| ||||    
T  21386181 accttttgaagaaattaactagtttattttttggacagttttattaacaactttacgaacttgtgaaacttgctttttcggatggtttt 21386093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 16155455 - 16155518
Alignment:
Q  8 ggagcacagatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgatt 71  Q
    |||||||| | ||||||||||||||||| |||||||||||||| |||||||||| |||||||||    
T  16155455 ggagcacataccagttagggttgcaattccgacagtggaaatttagatttcgacaccggtgatt 16155518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 21718404 - 21718347
Alignment:
Q  134 ttttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatg 191  Q
    ||||||| |||||||||| ||||| || |||||||||||||| || | ||||||||||    
T  21718404 ttttttatatagttttattaacaattttaagaacttgtgaaacttgcctttttggatg 21718347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 9180 - 9358
Alignment:
Q  19 cagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatcttt-gaa 117  Q
    ||||||||||||  |||||||| ||||||||||| ||||| |||||| | |||| |||  ||||||||||||  ||| |  |||||||||  |||| |||    
T  9180 cagttagggttgtgatttcgacggtggaaattcatatttcaacgccgtttattgcgacaccggttagggttgttgtggtagtgtttgttgtccttttgaa 9279  T
Q  118 gaaattaactaatttattttttagatagttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    ||||||||||| |||||||||||||||||||||| |||||||| | |||||||||||| || |||||||||||| ||||    
T  9280 gaaattaactagtttattttttagatagttttattaacaactttaggaacttgtgaaacttgcttttttggatggtttt 9358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 89601 - 89780
Alignment:
Q  19 cagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtgatgatgtttgttgatc-tttgaa 117  Q
    ||||||||||||| ||| |||| ||||||||||| |||||| ||  || ||||  |||| ||||||||||||| |||||| | |||||||| | ||||||    
T  89601 cagttagggttgcgattccgacggtggaaattcatatttcgccgtaggcgattacgacgccggttagggttgcagtgatggtctttgttgaccttttgaa 89700  T
Q  118 gaaattaactaatttattttttagatag-ttttatcaacaacttcaagaacttgtgaaagttacttttttggatgatttt 196  Q
    |||||||| || |||||||||||||||| |||||| |||||||| | |||||||||||| || |||||||||||| ||||    
T  89701 gaaattaaatagtttattttttagatagtttttattaacaactttaggaacttgtgaaactttcttttttggatggtttt 89780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 38244 - 38289
Alignment:
Q  112 tttgaagaaattaactaatttattttttagatagttttatcaacaa 157  Q
    ||||||||||||||||| ||||||||||  |||||||||| |||||    
T  38244 tttgaagaaattaactagtttattttttgaatagttttattaacaa 38289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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