View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6577_high_3 (Length: 492)
Name: NF6577_high_3
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 16 - 487
Target Start/End: Original strand, 3298841 - 3299312
Alignment:
| Q |
16 |
gaagggtgggttggtgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatcttacta |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3298841 |
gaagggtgggttggtgttttgaatgttcgtcaacaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggaccaatcttacta |
3298940 |
T |
|
| Q |
116 |
tgcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3298941 |
tgcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatct |
3299040 |
T |
|
| Q |
216 |
tatagtggacatacttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaagatgcattttttctgttgaaatcgtcccaatttgttgc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299041 |
tatagtggacatacttccttccaaggttcggttgaatatgaatatgattcctcctgaagaaagatgcattttttctgttgaaatcgtcccaatttgttgc |
3299140 |
T |
|
| Q |
316 |
ggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaacatttactttgc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3299141 |
ggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttactttgc |
3299240 |
T |
|
| Q |
416 |
ttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcactccttcat |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||||| ||||||| |
|
|
| T |
3299241 |
ttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcat |
3299312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 487
Target Start/End: Original strand, 3391734 - 3392205
Alignment:
| Q |
16 |
gaagggtgggttggtgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatcttacta |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3391734 |
gaagggtgggttggtgttttgaatgttcgtcaacaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggaccaattttacta |
3391833 |
T |
|
| Q |
116 |
tgcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3391834 |
agcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatct |
3391933 |
T |
|
| Q |
216 |
tatagtggacatacttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaagatgcattttttctgttgaaatcgtcccaatttgttgc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3391934 |
tatagtggacatacttccttccaaggttcggttgaatatgaatatgattcctcctgaagaaagatgcattttttctgttgaaatcgtcccaatttgttgc |
3392033 |
T |
|
| Q |
316 |
ggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaacatttactttgc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3392034 |
ggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttactttgc |
3392133 |
T |
|
| Q |
416 |
ttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcactccttcat |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||||| ||||||| |
|
|
| T |
3392134 |
ttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcat |
3392205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 30 - 487
Target Start/End: Complemental strand, 1164419 - 1163983
Alignment:
| Q |
30 |
tgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatcttactatgcttagtcatatt |
129 |
Q |
| |
|
|||| |||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||| | ||||| ||| || | || || |
|
|
| T |
1164419 |
tgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcagcgtttggaaccatcttggtatcgttggaaatttt |
1164320 |
T |
|
| Q |
130 |
atgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatac |
229 |
Q |
| |
|
||||||| || |||| ||| |||| |||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
1164319 |
cggagaatcgaatacaacatcaatga------aggtttgtctttctatttcaatagcttatctgatgctgcggaagttgtcaatcttatagtggacatac |
1164226 |
T |
|
| Q |
230 |
ttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattat |
329 |
Q |
| |
|
||||| || ||||||||| ||| | || | ||| | || | |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1164225 |
ttcctgcccaggttcagtggaacaagatt--gatcc-------------ataccttttttctgttgaaatcgtcccaatttgctgcggggatttgattat |
1164141 |
T |
|
| Q |
330 |
tctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaacatttactttgcttgatccatttacc |
429 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1164140 |
tctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttacc |
1164041 |
T |
|
| Q |
430 |
ttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcactccttcat |
487 |
Q |
| |
|
||||||||||||||||||||| ||| ||| |||||| ||||||||||||| ||||||| |
|
|
| T |
1164040 |
ttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcat |
1163983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 30 - 487
Target Start/End: Original strand, 1849347 - 1849783
Alignment:
| Q |
30 |
tgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatcttactatgcttagtcatatt |
129 |
Q |
| |
|
|||| |||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||| || | |||| ||| ||| | ||| |
|
|
| T |
1849347 |
tgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcagcgtttcgaaccatctcggtatccttgaaaagatt |
1849446 |
T |
|
| Q |
130 |
atgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatac |
229 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||||||| || | ||||||||||||||| || ||||| |
|
|
| T |
1849447 |
cggagaatcaaatacaacatcgatga------aggtttgtctttctgtttcaatagcatatctgatgctgcgaaagttgtcaatcttataacgggcatac |
1849540 |
T |
|
| Q |
230 |
ttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattat |
329 |
Q |
| |
|
||||| || |||||||| ||| | || | ||| | || | |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1849541 |
ttcctgccctggttcagtggaacaagatt--gatcc-------------ataccttttttctgttgaaatcgtcccaatttgctgcggggatttgattat |
1849625 |
T |
|
| Q |
330 |
tctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaacatttactttgcttgatccatttacc |
429 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1849626 |
tctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatccatttacc |
1849725 |
T |
|
| Q |
430 |
ttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcactccttcat |
487 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||| ||||||||||||| ||||||| |
|
|
| T |
1849726 |
ttgacccgctgtttcttaaaggctgatcgttactgggatgcacccttcacgccttcat |
1849783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 274 - 479
Target Start/End: Original strand, 38987301 - 38987506
Alignment:
| Q |
274 |
gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtc |
373 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||| |||||||||||||| |||||||| | || ||| ||||||||| |||||||||||||||| |
|
|
| T |
38987301 |
gaaagataccttttttctgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaatgttgttgcttctttgggtccaaatattggtc |
38987400 |
T |
|
| Q |
374 |
ctattgtcatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacc |
473 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| |
|
|
| T |
38987401 |
ctattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacc |
38987500 |
T |
|
| Q |
474 |
cttcac |
479 |
Q |
| |
|
||||| |
|
|
| T |
38987501 |
attcac |
38987506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 257 - 479
Target Start/End: Original strand, 40417871 - 40418096
Alignment:
| Q |
257 |
atatgattcctcctcaa---gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttc |
353 |
Q |
| |
|
|||||||||||||| || ||||||| | ||||| ||||||||||||||| ||||| |||||||||||||| |||||||| | || ||| |||||| |
|
|
| T |
40417871 |
atatgattcctcctgaaagtgaaagatacctttttcgtgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaatgttgttgcttc |
40417970 |
T |
|
| Q |
354 |
tttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtct |
453 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
40417971 |
tttcggtgaaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgct |
40418070 |
T |
|
| Q |
454 |
gatcagtactggaatgcacccttcac |
479 |
Q |
| |
|
||||||||||||| ||||| ||||| |
|
|
| T |
40418071 |
catcagtactggaaagcaccattcac |
40418096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 274 - 479
Target Start/End: Original strand, 39726023 - 39726219
Alignment:
| Q |
274 |
gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtc |
373 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||| |||||||||||||| |||||||| | | ||| ||||||||| ||||||||||||| |
|
|
| T |
39726023 |
gaaagataccttttttctgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg--- |
39726119 |
T |
|
| Q |
374 |
ctattgtcatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacc |
473 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| |
|
|
| T |
39726120 |
------tcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacc |
39726213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 291 - 479
Target Start/End: Original strand, 39879442 - 39879621
Alignment:
| Q |
291 |
tgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtact |
390 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||| |||||||| | | ||| ||||||||| ||||||||||||| |||| || ||| |
|
|
| T |
39879442 |
tgttaaaatcgtccccatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg---------tcatatgcact |
39879532 |
T |
|
| Q |
391 |
agggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcac |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| ||||| |
|
|
| T |
39879533 |
agggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcaccattcac |
39879621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 285 - 479
Target Start/End: Original strand, 39399520 - 39399708
Alignment:
| Q |
285 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatt |
384 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||||||||||||| |||||||| | || |||||||||| |||||| |||| ||||||||| |
|
|
| T |
39399520 |
tttttttgttgaaatcgtccccatttgctgcggggatttgatttttctgcctcctgatgttgctgcttcgttcggtgcaaa---------tattgtcata |
39399610 |
T |
|
| Q |
385 |
tgtactagggttgccaaaacatt---tactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcac |
479 |
Q |
| |
|
|| |||||||||||||||| | | |||||||||||||||||||||||||||| | || ||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
39399611 |
tgcactagggttgccaaaaaaattactactttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcac |
39399708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 285 - 479
Target Start/End: Original strand, 39168522 - 39168707
Alignment:
| Q |
285 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatt |
384 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||||||| ||||||| | ||||||||||| || ||||| ||||||||| | || |
|
|
| T |
39168522 |
tttttttgttgaaatcgtcccaattttctgcggagatttgatttttctgccccctaatattgctgctactctcggtgcaaatattgtt---------ata |
39168612 |
T |
|
| Q |
385 |
tgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcac |
479 |
Q |
| |
|
|| |||||||||||||||| | ||||||| |||||||||||||||||||| | || ||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
39168613 |
tgcactagggttgccaaaaaaattactttacttgatccatttaccttgactgctttttccttaaaggctgatgagtactggaatgcacccttcac |
39168707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 39879188 - 39879258
Alignment:
| Q |
30 |
tgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgttt |
100 |
Q |
| |
|
|||| |||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39879188 |
tgttgtgaatgttcgtcaacaacatgtttgtcagctgcgtactttctttcatttggagcagatcagcgttt |
39879258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 40411893 - 40411963
Alignment:
| Q |
30 |
tgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgttt |
100 |
Q |
| |
|
|||| |||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40411893 |
tgttgtgaatgttcgtcaacaacatgtttgtcagctgcgtactttctttcatttggagcagatcagcgttt |
40411963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 39725788 - 39725874
Alignment:
| Q |
30 |
tgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatcttactat |
116 |
Q |
| |
|
|||| |||| ||||||||||||||| ||| |||||| |||||| | |||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
39725788 |
tgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgaccaatcttgctat |
39725874 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 38987066 - 38987147
Alignment:
| Q |
30 |
tgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatctt |
111 |
Q |
| |
|
|||| |||| ||||||||||||||| ||| |||||| |||||| | |||||||||||||||||||||||| |||||||||| |
|
|
| T |
38987066 |
tgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgaccaatctt |
38987147 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 40596251 - 40596302
Alignment:
| Q |
285 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcct |
336 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||||||||||||| |||||||| |
|
|
| T |
40596251 |
tttttctgttgaaatcgtccccatttgctacggggatttgatttttctgcct |
40596302 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 285 - 484
Target Start/End: Complemental strand, 25912766 - 25912567
Alignment:
| Q |
285 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatt |
384 |
Q |
| |
|
||||| ||||||||||||||| |||| ||| ||||||||||| |||||||| | || |||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
25912766 |
tttttttgttgaaatcgtccccattttctgctgggatttgatttttctgcctcctaatgttgctgcttctttcagtgtaaatattggtcctattgtcatt |
25912667 |
T |
|
| Q |
385 |
tgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacccttcactcctt |
484 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
25912666 |
tgcactagggttgccaaaacatttactttacttgatccatttaccttgactcattgtttcttgaaggctgatcagtactggaatgcacccttcacgcctt |
25912567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 25913002 - 25912945
Alignment:
| Q |
42 |
tcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtt |
99 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25913002 |
tcgtcaacaacatgtttgtcaactgcgtactttctttcatttggagcagatcagcgtt |
25912945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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