View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6577_high_5 (Length: 465)
Name: NF6577_high_5
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 28895286 - 28894822
Alignment:
| Q |
1 |
tgctgaccaactattctaggagagtgattacataaccaccaaaaataacatactctcactatgttta-gcacaaaagaaaatattttattttgatatgac |
99 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||| |||||||||| ||||||||||| ||| || ||||||||||||||||||||||||| |
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| T |
28895286 |
tgctgaccaacacttctaggagagtgattacacaaccaccaaacataacatactttcactatgtttttgcaaaatagaaaatattttattttgatatgac |
28895187 |
T |
|
| Q |
100 |
aaaataataaacgacttatggtataggacacatggatttttcaataaacaatacaatattcaatacatcaatcaatcaatatatatgtgaaatcacacat |
199 |
Q |
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||||| |||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28895186 |
aaaatcataaacgacttatggtataggacacatgaattattcagtaaagaatacaatattcaatacatcaatcaatcaatatatatgtgaaaccacacat |
28895087 |
T |
|
| Q |
200 |
ttagtcaatttgaatgaaatagatacacacatacatgcatttgttgatattatatacacatactgtattttttaataatttttgtttattccttagtgct |
299 |
Q |
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| T |
28895086 |
taagtcaatttgaatgaaatacatacacacatacatgcatttgttgatattatatacacatactgtaatttttaataatttttgtttattccttagtgct |
28894987 |
T |
|
| Q |
300 |
aataagaatctgtctttgtctttgattagccattatattgaaccaatgaggaaacaagaaatgacaaattttcttgacaattgacatattaactctttag |
399 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28894986 |
gataagaatctgtctttgtctttgattagccgttatattgaaccaataaggaaacaagaaatgacaatttttcttgacaattgacatattaactctttag |
28894887 |
T |
|
| Q |
400 |
gtattgaatgaattcacacatggaaagcaagaaaaggtgagcaagaccgagttcaaagaggttct |
464 |
Q |
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| T |
28894886 |
gtattgaatgaattcacacatggaaagcaagaaaaagtgagcaagactgagttcaaagaggttct |
28894822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 397 - 464
Target Start/End: Original strand, 55097865 - 55097932
Alignment:
| Q |
397 |
taggtattgaatgaattcacacatggaaagcaagaaaaggtgagcaagaccgagttcaaagaggttct |
464 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
55097865 |
taggtgttgaatgaattcactcatggaaagcaagaaaaagtgagcaagagtgagttcaaagaggttct |
55097932 |
T |
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